Wall clock time and date at job start Sat Apr 11 2020 05:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30171 * 126.79884 * 2 1 4 4 O 1.20921 * 111.60566 * 180.02562 * 3 2 1 5 5 C 1.34044 * 111.56259 * 359.76304 * 4 3 2 6 6 C 1.35444 * 106.44648 * 0.38358 * 5 4 3 7 7 C 1.50706 * 128.00485 * 179.91494 * 6 5 4 8 8 N 1.46895 * 109.46904 * 259.67375 * 7 6 5 9 9 C 1.46905 * 111.00170 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.47066 * 180.02562 * 9 8 7 11 11 H 1.09002 * 110.88546 * 308.87703 * 10 9 8 12 12 C 1.55162 * 111.00113 * 184.99638 * 10 9 8 13 13 C 1.54318 * 102.94166 * 206.42404 * 12 10 9 14 14 N 1.47021 * 107.27468 * 22.19363 * 13 12 10 15 15 C 1.34774 * 125.65194 * 181.02225 * 14 13 12 16 16 O 1.21281 * 120.00138 * 180.02562 * 15 14 13 17 17 C 1.50701 * 119.99741 * 0.02857 * 15 14 13 18 18 S 1.81005 * 109.47173 * 179.97438 * 17 15 14 19 19 C 1.76189 * 100.00097 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00127 * 0.02562 * 19 18 17 21 21 C 1.38805 * 120.00013 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00034 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 270.00277 * 23 21 19 25 25 H 1.48501 * 109.47062 * 30.00228 * 23 21 19 26 26 H 1.48490 * 109.46901 * 150.00205 * 23 21 19 27 27 C 1.47429 * 108.69859 * 1.28731 * 14 13 12 28 28 H 1.09003 * 109.46949 * 269.97091 * 1 2 3 29 29 H 1.08992 * 109.47409 * 29.96740 * 1 2 3 30 30 H 1.08997 * 109.47015 * 149.97352 * 1 2 3 31 31 H 1.08006 * 126.77245 * 180.28795 * 5 4 3 32 32 H 1.08999 * 109.47070 * 139.67266 * 7 6 5 33 33 H 1.08999 * 109.47097 * 19.67538 * 7 6 5 34 34 H 1.00903 * 111.00332 * 303.95695 * 8 7 6 35 35 H 1.08995 * 109.46952 * 59.99874 * 9 8 7 36 36 H 1.09005 * 109.46642 * 299.99924 * 9 8 7 37 37 H 1.09009 * 110.71604 * 88.05920 * 12 10 9 38 38 H 1.08997 * 110.72358 * 324.78730 * 12 10 9 39 39 H 1.09004 * 109.88307 * 262.77850 * 13 12 10 40 40 H 1.08995 * 110.01154 * 141.68713 * 13 12 10 41 41 H 1.09005 * 109.47318 * 59.99759 * 17 15 14 42 42 H 1.09002 * 109.47150 * 299.99724 * 17 15 14 43 43 H 0.97001 * 119.99662 * 179.97438 * 22 21 19 44 44 H 1.08995 * 110.36335 * 94.48652 * 27 14 13 45 45 H 1.09003 * 110.36340 * 216.80505 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7254 -0.0005 5 6 3.6024 -0.6067 0.0042 6 6 2.3540 -1.1320 -0.0007 7 6 1.9591 -2.5864 -0.0002 8 7 1.5976 -2.9960 -1.3637 9 6 1.2057 -4.4113 -1.4018 10 6 0.8377 -4.8002 -2.8351 11 1 0.1174 -4.0983 -3.2554 12 6 0.2984 -6.2538 -2.8958 13 6 0.6330 -6.6866 -4.3388 14 7 1.7267 -5.8247 -4.8106 15 6 2.2933 -5.8726 -6.0324 16 8 3.1934 -5.1099 -6.3138 17 6 1.8085 -6.8737 -7.0491 18 16 2.7593 -6.6896 -8.5783 19 6 2.0061 -7.9440 -9.5598 20 1 1.2056 -8.5423 -9.1504 21 6 2.4416 -8.1634 -10.8594 22 7 1.8793 -9.1009 -11.5926 23 14 3.8257 -7.1281 -11.5679 24 1 3.2568 -5.9246 -12.2260 25 1 4.7398 -6.7092 -10.4752 26 1 4.5808 -7.9275 -12.5658 27 6 2.1052 -4.9037 -3.7234 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5133 30 1 -0.3633 -0.8897 -0.5142 31 1 4.5340 -1.1533 0.0093 32 1 1.1048 -2.7307 0.6611 33 1 2.7962 -3.1900 0.3507 34 1 0.8665 -2.4086 -1.7360 35 1 0.3460 -4.5679 -0.7503 36 1 2.0373 -5.0279 -1.0605 37 1 -0.7784 -6.2730 -2.7273 38 1 0.8141 -6.8870 -2.1739 39 1 -0.2416 -6.5581 -4.9766 40 1 0.9508 -7.7291 -4.3513 41 1 0.7523 -6.6999 -7.2552 42 1 1.9410 -7.8824 -6.6577 43 1 2.1834 -9.2539 -12.5009 44 1 2.9389 -5.3127 -3.1528 45 1 2.3651 -3.9255 -4.1282 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491786808.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:37 Heat of formation + Delta-G solvation = 24.445253 kcal Electronic energy + Delta-G solvation = -25872.299875 eV Core-core repulsion = 22019.202986 eV Total energy + Delta-G solvation = -3853.096889 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.30436 -39.94330 -37.97013 -36.76793 -34.84709 -32.86032 -32.42853 -31.65783 -29.69622 -29.28758 -29.00162 -26.68556 -25.60563 -24.43062 -22.80390 -21.96257 -21.72415 -20.67885 -19.36556 -17.94854 -17.84389 -17.67943 -16.68901 -16.55757 -16.24106 -15.39981 -15.29500 -15.05317 -14.90354 -14.47531 -13.97210 -13.86076 -13.81794 -13.75461 -13.50807 -13.23830 -12.95520 -12.89499 -12.81895 -12.65933 -12.43265 -12.14700 -11.87023 -11.50895 -11.41011 -11.24136 -11.19862 -11.00937 -10.97815 -10.58387 -10.29670 -9.90645 -9.84482 -9.48799 -8.99254 -8.92771 -8.53213 -8.48110 -6.90721 -6.28050 -3.99567 1.11695 1.75133 2.72587 2.87568 2.98771 3.23448 3.34612 3.52178 3.60073 3.64241 3.80078 4.07406 4.25608 4.32414 4.34849 4.42735 4.46255 4.58971 4.73185 4.90216 4.95172 4.97189 4.99109 5.03821 5.06361 5.11050 5.21723 5.23559 5.28857 5.33692 5.34588 5.36999 5.50246 5.57131 5.67136 5.69083 5.84967 5.91565 5.96235 6.03372 6.39177 6.43680 6.81650 7.62616 7.88835 7.95025 8.42254 8.48137 9.18245 10.81088 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018935 B = 0.001894 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.395501 B =14777.781058 C =15747.589337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.020 3.980 3 N -0.366 5.366 4 O 0.097 5.903 5 C -0.036 4.036 6 C -0.202 4.202 7 C 0.138 3.862 8 N -0.685 5.685 9 C 0.071 3.929 10 C -0.100 4.100 11 H 0.085 0.915 12 C -0.125 4.125 13 C 0.100 3.900 14 N -0.628 5.628 15 C 0.546 3.454 16 O -0.518 6.518 17 C -0.117 4.117 18 S -0.143 6.143 19 C -0.520 4.520 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.235 1.235 26 H -0.274 1.274 27 C 0.124 3.876 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.218 0.782 32 H 0.045 0.955 33 H 0.087 0.913 34 H 0.343 0.657 35 H 0.038 0.962 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.271 0.729 44 H 0.065 0.935 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.565 11.594 29.855 32.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.140 4.140 3 N -0.072 5.072 4 O 0.033 5.967 5 C -0.119 4.119 6 C -0.206 4.206 7 C 0.009 3.991 8 N -0.317 5.317 9 C -0.058 4.058 10 C -0.120 4.120 11 H 0.104 0.896 12 C -0.163 4.163 13 C -0.023 4.023 14 N -0.365 5.365 15 C 0.334 3.666 16 O -0.392 6.392 17 C -0.268 4.268 18 S 0.083 5.917 19 C -0.668 4.668 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.159 1.159 26 H -0.199 1.199 27 C 0.001 3.999 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.234 0.766 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.162 0.838 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.758 13.809 28.979 32.219 hybrid contribution -1.492 -1.569 0.162 2.171 sum -4.250 12.240 29.141 31.892 Atomic orbital electron populations 1.20155 0.86114 1.03781 1.03293 1.23527 0.98944 0.88574 1.02925 1.73863 0.89482 1.24228 1.19617 1.84837 1.21489 1.23143 1.67224 1.25864 1.00863 0.83423 1.01722 1.21122 0.92463 0.97069 1.09948 1.20064 1.00548 0.88509 0.89982 1.60474 1.46879 1.03715 1.20583 1.21927 0.99554 0.88952 0.95359 1.22413 0.97738 0.96891 0.94931 0.89646 1.22659 1.01777 0.95704 0.96168 1.21998 0.90438 0.94973 0.94890 1.48506 1.37366 1.37698 1.12926 1.19962 0.81705 0.84275 0.80621 1.90708 1.29165 1.41733 1.77604 1.23257 1.04479 1.00576 0.98479 1.84797 1.49238 1.50418 1.07201 1.22308 1.23643 1.20298 1.00555 0.89415 1.24716 0.96314 0.94604 0.95703 1.69941 1.41263 1.30952 1.09553 0.86731 0.83262 0.80793 0.81060 1.19205 1.15893 1.19948 1.22133 0.95739 0.94654 0.87345 0.90196 0.90269 0.90430 0.76590 0.93707 0.89446 0.83823 0.94432 0.90222 0.89954 0.90325 0.91218 0.91140 0.88678 0.88618 0.91960 0.91697 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.39 36.01 0.37 -0.03 16 2 C 0.02 0.16 7.33 -82.10 -0.60 -0.44 16 3 N -0.37 -3.77 12.07 33.42 0.40 -3.37 16 4 O 0.10 0.88 11.20 17.17 0.19 1.08 16 5 C -0.04 -0.23 12.26 29.74 0.36 0.13 16 6 C -0.20 -1.37 5.84 -104.42 -0.61 -1.98 16 7 C 0.14 0.70 6.17 -4.98 -0.03 0.67 16 8 N -0.68 -4.17 6.44 -115.06 -0.74 -4.91 16 9 C 0.07 0.38 5.14 -3.82 -0.02 0.36 16 10 C -0.10 -0.72 3.21 -88.35 -0.28 -1.01 16 11 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 12 C -0.12 -0.81 6.42 -24.90 -0.16 -0.97 16 13 C 0.10 1.00 6.48 -3.07 -0.02 0.98 16 14 N -0.63 -8.71 3.32 -170.39 -0.57 -9.27 16 15 C 0.55 10.29 7.87 -10.99 -0.09 10.21 16 16 O -0.52 -11.75 16.12 5.56 0.09 -11.66 16 17 C -0.12 -2.35 5.35 36.01 0.19 -2.16 16 18 S -0.14 -3.70 18.55 -107.50 -1.99 -5.69 16 19 C -0.52 -15.11 10.04 30.94 0.31 -14.80 16 20 H 0.09 2.65 8.03 -52.49 -0.42 2.22 16 21 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 22 N -0.88 -26.65 13.97 55.49 0.78 -25.87 16 23 Si 0.86 21.98 27.74 -169.99 -4.72 17.27 16 24 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.23 -6.03 6.74 56.52 0.38 -5.65 16 26 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 27 C 0.12 1.41 6.33 -2.41 -0.02 1.39 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.30 7.78 -51.93 -0.40 -0.11 16 31 H 0.22 0.62 8.06 -52.48 -0.42 0.19 16 32 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.34 2.06 8.36 -39.29 -0.33 1.73 16 35 H 0.04 0.16 8.14 -51.93 -0.42 -0.27 16 36 H 0.08 0.43 7.96 -51.93 -0.41 0.02 16 37 H 0.08 0.41 8.14 -51.92 -0.42 -0.02 16 38 H 0.08 0.44 8.04 -51.93 -0.42 0.02 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 1.78 8.14 -51.91 -0.42 1.36 16 42 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 43 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.06 0.73 7.91 -51.93 -0.41 0.31 16 45 H 0.08 1.09 8.03 -51.93 -0.42 0.67 16 LS Contribution 390.73 15.07 5.89 5.89 Total: -1.00 -36.33 390.73 -8.39 -44.72 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -7.04 Total: -3.23 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -0.68 Total: -4.94 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: -0.13 Total: -43.42 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.28 Total: -10.58 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.72 Total: 17.27 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -1.99 Total: -5.69 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.33 -8.39 -44.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491786808.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.163 kcal (2) G-P(sol) polarization free energy of solvation -36.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds