Wall clock time and date at job start Sat Apr 11 2020 05:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33816 * 124.51986 * 2 1 4 4 C 1.37477 * 115.09687 * 180.02562 * 3 2 1 5 5 C 1.50703 * 123.34954 * 179.97438 * 4 3 2 6 6 C 1.36644 * 113.29926 * 0.23424 * 4 3 2 7 7 C 1.46582 * 125.45827 * 179.74425 * 6 4 3 8 8 O 1.21697 * 120.00245 * 359.97438 * 7 6 4 9 9 N 1.34776 * 119.99781 * 179.97438 * 7 6 4 10 10 C 1.46504 * 119.99812 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46877 * 179.97438 * 10 9 7 12 12 N 1.46904 * 109.47018 * 180.02562 * 11 10 9 13 13 C 1.46894 * 111.00191 * 66.04454 * 12 11 10 14 14 C 1.46899 * 111.00068 * 189.99992 * 12 11 10 15 15 C 1.50701 * 109.47308 * 169.99869 * 14 12 11 16 16 O 1.21292 * 119.99722 * 359.97438 * 15 14 12 17 17 N 1.34769 * 120.00106 * 180.02562 * 15 14 12 18 18 C 1.37102 * 120.00213 * 179.97438 * 17 15 14 19 19 H 1.08000 * 119.99691 * 359.97438 * 18 17 15 20 20 C 1.38949 * 120.00056 * 179.97438 * 18 17 15 21 21 N 1.31414 * 120.00012 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99797 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46997 * 89.99824 * 22 20 18 24 24 H 1.48500 * 109.47449 * 209.99818 * 22 20 18 25 25 H 1.48500 * 109.47550 * 330.00333 * 22 20 18 26 26 S 1.70619 * 124.52256 * 180.02562 * 2 1 3 27 27 H 1.09005 * 109.46870 * 89.99852 * 1 2 3 28 28 H 1.09002 * 109.47428 * 210.00095 * 1 2 3 29 29 H 1.09003 * 109.47368 * 330.00270 * 1 2 3 30 30 H 1.07996 * 122.45496 * 0.04065 * 3 2 1 31 31 H 1.09002 * 109.47152 * 90.02652 * 5 4 3 32 32 H 1.09001 * 109.46980 * 330.02752 * 5 4 3 33 33 H 1.09004 * 109.47113 * 210.02733 * 5 4 3 34 34 H 0.97005 * 119.99996 * 359.97438 * 9 7 6 35 35 H 1.08998 * 109.46786 * 299.99577 * 10 9 7 36 36 H 1.08993 * 109.47373 * 60.00045 * 10 9 7 37 37 H 1.09005 * 109.47128 * 299.99786 * 11 10 9 38 38 H 1.09003 * 109.47517 * 60.00176 * 11 10 9 39 39 H 1.09001 * 109.46959 * 60.00133 * 13 12 11 40 40 H 1.08995 * 109.47012 * 180.02562 * 13 12 11 41 41 H 1.09002 * 109.46799 * 300.00332 * 13 12 11 42 42 H 1.09003 * 109.47237 * 289.99858 * 14 12 11 43 43 H 1.09009 * 109.47333 * 49.99586 * 14 12 11 44 44 H 0.97004 * 120.00090 * 0.02562 * 17 15 14 45 45 H 0.96997 * 119.99213 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2653 1.1025 0.0000 4 6 3.6215 0.8775 -0.0006 5 6 4.6450 1.9837 -0.0012 6 6 3.9493 -0.4491 -0.0061 7 6 5.3123 -0.9882 -0.0134 8 8 6.2658 -0.2320 -0.0153 9 7 5.5096 -2.3215 -0.0179 10 6 6.8719 -2.8603 -0.0257 11 6 6.8155 -4.3893 -0.0290 12 7 8.1815 -4.9297 -0.0362 13 6 8.8813 -4.6085 1.2147 14 6 8.1732 -6.3787 -0.2776 15 6 9.5817 -6.8553 -0.5223 16 8 10.5020 -6.0655 -0.4983 17 7 9.8188 -8.1589 -0.7686 18 6 11.1002 -8.5925 -0.9917 19 1 11.9196 -7.8892 -0.9704 20 6 11.3446 -9.9366 -1.2452 21 7 10.3475 -10.7922 -1.2716 22 14 13.0904 -10.5271 -1.5498 23 1 13.7148 -10.9128 -0.2587 24 1 13.0643 -11.7021 -2.4576 25 1 13.8802 -9.4360 -2.1750 26 16 2.4740 -1.4057 -0.0006 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.8429 2.0965 0.0006 31 1 4.8925 2.2503 1.0263 32 1 4.2380 2.8549 -0.5146 33 1 5.5446 1.6461 -0.5158 34 1 4.7495 -2.9242 -0.0161 35 1 7.3945 -2.5138 -0.9172 36 1 7.4029 -2.5187 0.8627 37 1 6.2929 -4.7355 0.8628 38 1 6.2843 -4.7315 -0.9173 39 1 8.3390 -5.0406 2.0557 40 1 9.8902 -5.0198 1.1826 41 1 8.9341 -3.5263 1.3339 42 1 7.7627 -6.8898 0.5932 43 1 7.5585 -6.5981 -1.1508 44 1 9.0827 -8.7904 -0.7889 45 1 10.5183 -11.7305 -1.4482 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492262856.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:39 Heat of formation + Delta-G solvation = -38.211195 kcal Electronic energy + Delta-G solvation = -25714.238849 eV Core-core repulsion = 21858.424973 eV Total energy + Delta-G solvation = -3855.813876 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.12160 -38.75287 -38.31789 -36.76136 -34.70395 -33.80712 -33.09263 -31.25339 -30.09096 -28.62086 -27.87867 -27.35098 -25.25361 -23.87845 -22.44427 -21.62945 -21.28404 -19.26890 -19.16694 -18.03941 -17.84297 -16.47391 -16.21131 -15.99004 -15.80892 -15.19816 -15.04333 -14.67757 -14.55006 -14.41442 -14.03122 -13.89693 -13.56439 -13.45604 -13.38793 -13.35683 -13.12905 -12.92240 -12.24801 -12.12769 -12.06167 -11.99811 -11.86667 -11.52167 -11.40651 -11.27592 -11.23459 -11.05508 -10.94040 -10.38439 -10.21584 -10.09257 -9.47612 -9.33200 -8.96422 -8.77683 -8.48065 -7.98799 -7.89090 -6.41563 -3.82219 0.14173 1.07039 1.47683 2.00205 2.83118 2.96824 3.18274 3.27070 3.33314 3.90291 4.04573 4.24778 4.27489 4.52814 4.68536 4.82242 4.85591 4.96767 4.97614 5.02092 5.12093 5.24292 5.25176 5.36775 5.38498 5.47516 5.61032 5.63105 5.68860 5.70930 5.82111 5.87278 5.92679 5.99546 6.01858 6.13968 6.25588 6.27957 6.55875 7.16384 7.23869 7.32076 7.55768 7.95269 8.06708 8.62068 9.18573 9.54542 10.06454 10.76206 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028448 B = 0.001683 C = 0.001610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.013796 B =16635.479415 C =17383.758184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.190 4.190 3 C -0.155 4.155 4 C -0.014 4.014 5 C -0.107 4.107 6 C -0.277 4.277 7 C 0.592 3.408 8 O -0.523 6.523 9 N -0.726 5.726 10 C 0.123 3.877 11 C 0.043 3.957 12 N -0.514 5.514 13 C 0.018 3.982 14 C 0.047 3.953 15 C 0.444 3.556 16 O -0.576 6.576 17 N -0.564 5.564 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 S 0.191 5.809 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.144 0.856 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.395 0.605 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.037 0.963 38 H 0.079 0.921 39 H 0.016 0.984 40 H 0.098 0.902 41 H 0.063 0.937 42 H 0.049 0.951 43 H 0.089 0.911 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.371 19.145 3.970 30.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.309 4.309 3 C -0.186 4.186 4 C -0.029 4.029 5 C -0.166 4.166 6 C -0.397 4.397 7 C 0.378 3.622 8 O -0.401 6.401 9 N -0.378 5.378 10 C 0.000 4.000 11 C -0.085 4.085 12 N -0.239 5.239 13 C -0.130 4.130 14 C -0.084 4.084 15 C 0.229 3.771 16 O -0.460 6.460 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 S 0.460 5.540 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.162 0.838 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.229 0.771 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.055 0.945 38 H 0.098 0.902 39 H 0.034 0.966 40 H 0.117 0.883 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.107 0.893 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.091 18.624 3.559 29.112 hybrid contribution -0.385 -0.016 0.490 0.624 sum -22.476 18.608 4.050 29.459 Atomic orbital electron populations 1.20417 0.87296 1.03579 1.03212 1.24175 1.01513 0.97758 1.07502 1.19864 0.92147 0.99675 1.06944 1.19500 0.94746 0.93456 0.95163 1.20765 0.98034 0.94621 1.03141 1.24337 0.96788 0.97514 1.21111 1.16848 0.86746 0.82077 0.76493 1.90800 1.41849 1.57560 1.49936 1.45812 1.09676 1.06321 1.75948 1.21379 0.81757 0.93078 1.03785 1.22261 0.91255 0.93773 1.01255 1.61438 1.13547 1.12498 1.36372 1.22635 1.01447 1.01100 0.87829 1.21874 0.97804 0.87553 1.01209 1.19699 0.89616 0.83232 0.84551 1.90495 1.45286 1.53983 1.56227 1.41859 1.09643 1.06497 1.62102 1.19707 0.85186 0.92946 1.44956 0.87879 1.25258 0.99559 0.95728 0.97415 1.69614 1.31306 1.03769 1.49691 0.85855 0.81889 0.78279 0.78252 1.20447 1.20946 1.19393 1.82937 0.94301 1.07649 1.69124 0.90254 0.90976 0.90223 0.83836 0.90601 0.91646 0.88692 0.77075 0.89904 0.90847 0.94507 0.90214 0.96598 0.88330 0.91816 0.93326 0.89298 0.77507 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.36 10.31 36.01 0.37 0.02 16 2 C -0.19 -1.32 6.28 -35.86 -0.23 -1.54 16 3 C -0.16 -1.20 9.82 -41.41 -0.41 -1.60 16 4 C -0.01 -0.13 5.90 -105.47 -0.62 -0.76 16 5 C -0.11 -0.99 9.56 36.01 0.34 -0.64 16 6 C -0.28 -2.89 6.45 -36.79 -0.24 -3.12 16 7 C 0.59 7.39 7.78 -12.90 -0.10 7.29 16 8 O -0.52 -8.13 14.24 5.19 0.07 -8.05 16 9 N -0.73 -7.77 5.55 -61.65 -0.34 -8.11 16 10 C 0.12 1.52 5.60 -4.04 -0.02 1.50 16 11 C 0.04 0.53 5.07 -3.82 -0.02 0.51 16 12 N -0.51 -8.43 4.50 -244.36 -1.10 -9.53 16 13 C 0.02 0.29 8.96 60.06 0.54 0.82 16 14 C 0.05 0.82 5.45 -4.98 -0.03 0.79 16 15 C 0.44 10.38 7.47 -10.99 -0.08 10.30 16 16 O -0.58 -15.45 13.91 5.55 0.08 -15.37 16 17 N -0.56 -14.19 5.29 -10.96 -0.06 -14.25 16 18 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 19 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.43 13.05 55.50 0.72 -23.71 16 22 Si 0.93 21.05 29.55 -169.99 -5.02 16.02 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 S 0.19 1.42 22.10 -107.50 -2.38 -0.96 16 27 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 1.09 6.00 -51.93 -0.31 0.78 16 34 H 0.40 3.26 7.59 -40.82 -0.31 2.95 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.07 0.97 6.55 -51.93 -0.34 0.63 16 37 H 0.04 0.40 8.12 -51.93 -0.42 -0.02 16 38 H 0.08 0.87 7.93 -51.93 -0.41 0.46 16 39 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.10 1.95 5.82 -51.93 -0.30 1.65 16 41 H 0.06 0.93 6.47 -51.93 -0.34 0.60 16 42 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 43 H 0.09 1.38 7.93 -51.92 -0.41 0.97 16 44 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 45 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 386.30 15.07 5.82 5.82 Total: -1.00 -33.15 386.30 -9.41 -42.57 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -6.48 Total: 9.95 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -0.73 Total: 5.62 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: -0.78 Total: -55.60 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: 0.15 Total: -23.42 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.38 Total: -0.96 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.15 -9.41 -42.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492262856.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.357 kcal (2) G-P(sol) polarization free energy of solvation -33.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds