Wall clock time and date at job start Sat Apr 11 2020 05:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35447 * 128.01181 * 2 1 4 4 O 1.34038 * 106.45254 * 180.23536 * 3 2 1 5 5 N 1.20927 * 111.56200 * 359.75037 * 4 3 2 6 6 C 1.30171 * 111.60607 * 359.97438 * 5 4 3 7 7 C 1.50697 * 126.80305 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47055 * 90.02736 * 7 6 5 9 9 C 1.48529 * 111.00470 * 287.39919 * 8 7 6 10 10 C 1.54934 * 103.23199 * 200.27911 * 9 8 7 11 11 C 1.54596 * 102.92114 * 37.41148 * 10 9 8 12 12 H 1.09001 * 110.38915 * 219.08783 * 11 10 9 13 13 N 1.46504 * 110.30846 * 96.96018 * 11 10 9 14 14 C 1.46497 * 119.99898 * 304.28510 * 13 11 10 15 15 C 1.34771 * 119.99670 * 124.28073 * 13 11 10 16 16 O 1.21284 * 120.00353 * 0.02562 * 15 13 11 17 17 C 1.50703 * 119.99952 * 179.97438 * 15 13 11 18 18 S 1.80990 * 109.47384 * 180.02562 * 17 15 13 19 19 C 1.76199 * 100.00278 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99888 * 359.97438 * 19 18 17 21 21 C 1.38797 * 120.00452 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00292 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99660 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 269.99524 * 23 21 19 25 25 H 1.48503 * 109.47261 * 149.99704 * 23 21 19 26 26 H 1.48500 * 109.47454 * 29.99697 * 23 21 19 27 27 C 1.47905 * 111.00244 * 170.00224 * 8 7 6 28 28 H 1.08994 * 109.47084 * 270.16371 * 1 2 3 29 29 H 1.08997 * 109.47133 * 30.16664 * 1 2 3 30 30 H 1.09006 * 109.47412 * 150.16198 * 1 2 3 31 31 H 1.08007 * 126.77258 * 359.96201 * 3 2 1 32 32 H 1.09003 * 109.47308 * 330.03178 * 7 6 5 33 33 H 1.08998 * 109.47639 * 210.03131 * 7 6 5 34 34 H 1.09000 * 110.66459 * 318.71648 * 9 8 7 35 35 H 1.09009 * 110.66926 * 81.67229 * 9 8 7 36 36 H 1.09004 * 110.72116 * 279.05751 * 10 9 8 37 37 H 1.08994 * 110.72811 * 155.77280 * 10 9 8 38 38 H 1.08997 * 109.47000 * 269.99835 * 14 13 11 39 39 H 1.08999 * 109.47159 * 29.99895 * 14 13 11 40 40 H 1.08996 * 109.46926 * 149.99671 * 14 13 11 41 41 H 1.09001 * 109.47050 * 59.99941 * 17 15 13 42 42 H 1.08999 * 109.47014 * 300.00996 * 17 15 13 43 43 H 0.96997 * 119.99773 * 180.02562 * 22 21 19 44 44 H 1.09000 * 109.91372 * 26.48865 * 27 8 7 45 45 H 1.09003 * 110.08204 * 265.28970 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3411 1.0672 0.0000 4 8 3.5877 0.5746 -0.0053 5 7 3.5878 -0.6346 -0.0034 6 6 2.3776 -1.1140 0.0037 7 6 1.9826 -2.5683 0.0074 8 7 1.8612 -3.0391 1.3936 9 6 3.1972 -3.1791 2.0273 10 6 2.9291 -4.1421 3.2111 11 6 1.8963 -5.1317 2.6246 12 1 1.1443 -5.3833 3.3724 13 7 2.5669 -6.3450 2.1507 14 6 3.6520 -6.2472 1.1714 15 6 2.1854 -7.5511 2.6158 16 8 1.2868 -7.6320 3.4262 17 6 2.8748 -8.7992 2.1279 18 16 2.1420 -10.2463 2.9308 19 6 3.1089 -11.5247 2.1991 20 1 3.8800 -11.2769 1.4847 21 6 2.8797 -12.8503 2.5408 22 7 3.6024 -13.8053 1.9946 23 14 1.5455 -13.2790 3.7760 24 1 2.1215 -13.2851 5.1448 25 1 0.9958 -14.6229 3.4644 26 1 0.4585 -12.2701 3.7008 27 6 1.2478 -4.3840 1.4449 28 1 -0.3633 0.0029 1.0276 29 1 -0.3633 0.8885 -0.5164 30 1 -0.3634 -0.8915 -0.5113 31 1 2.0576 2.1094 -0.0006 32 1 2.7437 -3.1529 -0.5094 33 1 1.0260 -2.6864 -0.5015 34 1 3.9102 -3.6172 1.3289 35 1 3.5558 -2.2144 2.3864 36 1 2.5078 -3.6026 4.0593 37 1 3.8422 -4.6631 3.4990 38 1 3.2386 -6.3017 0.1643 39 1 4.1726 -5.2982 1.2995 40 1 4.3522 -7.0689 1.3217 41 1 3.9360 -8.7468 2.3710 42 1 2.7533 -8.8828 1.0479 43 1 3.4418 -14.7317 2.2331 44 1 1.4436 -4.9171 0.5145 45 1 0.1729 -4.2993 1.6048 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494801769.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:53 Heat of formation + Delta-G solvation = 43.449193 kcal Electronic energy + Delta-G solvation = -26807.212005 eV Core-core repulsion = 22954.939189 eV Total energy + Delta-G solvation = -3852.272816 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.27217 -40.41161 -38.56136 -35.90999 -34.73792 -32.88378 -32.45330 -31.48573 -29.75632 -28.69380 -28.39493 -27.09490 -26.00772 -25.59332 -22.31147 -21.79477 -21.44155 -21.07172 -19.15910 -17.94485 -17.87420 -17.74505 -17.06940 -16.41202 -15.99659 -15.59710 -15.33060 -14.99596 -14.65348 -14.56291 -14.00845 -13.88290 -13.67210 -13.47273 -13.33040 -13.09927 -12.92817 -12.77279 -12.67972 -12.46660 -12.34723 -12.07537 -12.00176 -11.72716 -11.56621 -11.36281 -11.27442 -11.10998 -11.02024 -10.61425 -10.35734 -9.87125 -9.71231 -9.49815 -9.01819 -8.93661 -8.60983 -8.51252 -6.93977 -6.30356 -4.02369 1.14434 1.79885 2.65291 2.86669 2.91713 3.13498 3.32118 3.49267 3.53715 3.61629 3.90640 4.06741 4.26462 4.31803 4.44964 4.52086 4.63270 4.69437 4.82480 4.85675 4.95239 5.03816 5.06739 5.08506 5.10217 5.17422 5.21643 5.27232 5.30068 5.39073 5.40472 5.43125 5.55965 5.62689 5.70311 5.74294 5.79565 5.85125 5.90980 5.98120 6.27227 6.51676 6.63281 7.37204 7.92104 7.92605 8.37783 8.39921 9.15765 10.78807 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032593 B = 0.002011 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.866777 B =13920.510000 C =14183.801026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.184 4.184 3 C -0.070 4.070 4 O 0.100 5.900 5 N -0.360 5.360 6 C 0.029 3.971 7 C 0.124 3.876 8 N -0.508 5.508 9 C 0.034 3.966 10 C -0.132 4.132 11 C 0.133 3.867 12 H 0.114 0.886 13 N -0.616 5.616 14 C 0.071 3.929 15 C 0.534 3.466 16 O -0.517 6.517 17 C -0.121 4.121 18 S -0.143 6.143 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.028 3.972 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.214 0.786 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.271 0.729 44 H 0.056 0.944 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.323 31.354 -5.439 31.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.189 4.189 3 C -0.152 4.152 4 O 0.033 5.967 5 N -0.063 5.063 6 C -0.130 4.130 7 C -0.005 4.005 8 N -0.233 5.233 9 C -0.093 4.093 10 C -0.171 4.171 11 C 0.028 3.972 12 H 0.132 0.868 13 N -0.352 5.352 14 C -0.072 4.072 15 C 0.322 3.678 16 O -0.391 6.391 17 C -0.271 4.271 18 S 0.084 5.916 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.101 4.101 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.231 0.769 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.711 30.843 -4.014 31.323 hybrid contribution 0.425 -0.623 -1.111 1.343 sum -3.286 30.220 -5.125 30.827 Atomic orbital electron populations 1.20081 0.87284 1.02874 1.03001 1.21304 0.98767 0.91420 1.07363 1.25752 0.83183 1.01147 1.05082 1.84819 1.29126 1.15491 1.67241 1.73854 1.22396 0.91375 1.18695 1.23244 0.88485 0.98072 1.03233 1.20472 1.01723 0.87441 0.90826 1.64763 1.19277 1.24325 1.14950 1.23391 0.90080 0.99920 0.95922 1.22880 0.99769 0.96444 0.98030 1.21810 0.95275 0.84036 0.96046 0.86795 1.47913 1.36870 1.05686 1.44738 1.21905 0.90020 1.03427 0.91878 1.20341 0.82930 0.83905 0.80645 1.90688 1.29787 1.85994 1.32614 1.23313 1.03395 0.95812 1.04602 1.84787 1.50116 0.97284 1.59437 1.22302 1.22289 0.91902 1.30378 0.89419 1.24717 0.95862 0.95139 0.95619 1.69938 1.39076 1.00351 1.42274 0.86730 0.83502 0.79639 0.81946 1.19197 1.19934 1.15927 1.23264 1.00419 0.87825 0.98581 0.90477 0.91264 0.91031 0.76914 0.92580 0.88481 0.93016 0.90191 0.89602 0.90049 0.92806 0.91005 0.90251 0.88532 0.88539 0.91931 0.92516 0.89031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 10.37 36.00 0.37 0.01 16 2 C -0.18 -1.32 6.32 -104.42 -0.66 -1.98 16 3 C -0.07 -0.42 12.26 29.74 0.36 -0.05 16 4 O 0.10 0.88 11.20 17.18 0.19 1.07 16 5 N -0.36 -3.75 12.07 33.42 0.40 -3.35 16 6 C 0.03 0.27 6.43 -82.10 -0.53 -0.26 16 7 C 0.12 1.04 5.22 -4.98 -0.03 1.02 16 8 N -0.51 -4.65 5.23 -231.89 -1.21 -5.87 16 9 C 0.03 0.32 5.75 -1.90 -0.01 0.31 16 10 C -0.13 -1.30 6.14 -24.87 -0.15 -1.45 16 11 C 0.13 1.54 3.44 -66.57 -0.23 1.31 16 12 H 0.11 1.54 6.97 -51.93 -0.36 1.18 16 13 N -0.62 -8.13 2.72 -172.38 -0.47 -8.60 16 14 C 0.07 0.73 9.22 59.85 0.55 1.28 16 15 C 0.53 9.51 7.69 -10.99 -0.08 9.42 16 16 O -0.52 -11.01 15.22 5.55 0.08 -10.92 16 17 C -0.12 -2.34 4.71 36.01 0.17 -2.17 16 18 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 16 19 C -0.52 -14.98 10.04 30.94 0.31 -14.67 16 20 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 21 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 22 N -0.88 -26.50 13.97 55.49 0.78 -25.73 16 23 Si 0.86 21.77 27.74 -169.99 -4.71 17.06 16 24 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 27 C 0.03 0.27 6.18 -2.75 -0.02 0.25 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.34 7.65 -51.93 -0.40 -0.06 16 31 H 0.21 0.35 8.06 -52.48 -0.42 -0.07 16 32 H 0.06 0.49 7.83 -51.93 -0.41 0.08 16 33 H 0.10 0.68 7.59 -51.93 -0.39 0.28 16 34 H 0.05 0.48 5.66 -51.93 -0.29 0.19 16 35 H 0.08 0.81 8.14 -51.92 -0.42 0.38 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.82 7.89 -51.93 -0.41 0.41 16 38 H 0.05 0.51 7.92 -51.93 -0.41 0.10 16 39 H 0.07 0.63 4.76 -51.93 -0.25 0.39 16 40 H 0.08 0.83 6.44 -51.93 -0.33 0.50 16 41 H 0.10 1.75 7.40 -51.92 -0.38 1.37 16 42 H 0.10 1.75 8.11 -51.92 -0.42 1.33 16 43 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.06 0.55 6.88 -51.93 -0.36 0.19 16 45 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 377.13 15.07 5.68 5.68 Total: -1.00 -34.62 377.13 -7.82 -42.44 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -6.53 Total: -1.89 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -0.03 Total: -4.30 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: -0.50 Total: -43.54 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.28 Total: -9.85 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.06 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.62 -7.82 -42.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494801769.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.889 kcal (2) G-P(sol) polarization free energy of solvation -34.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds