Wall clock time and date at job start Sat Apr 11 2020 05:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35447 * 128.01181 * 2 1 4 4 O 1.34038 * 106.45254 * 180.23536 * 3 2 1 5 5 N 1.20927 * 111.56200 * 359.75037 * 4 3 2 6 6 C 1.30171 * 111.60607 * 359.97438 * 5 4 3 7 7 C 1.50697 * 126.80305 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47055 * 90.02736 * 7 6 5 9 9 C 1.48529 * 111.00470 * 287.39919 * 8 7 6 10 10 C 1.54934 * 103.23199 * 200.27911 * 9 8 7 11 11 C 1.54596 * 102.92114 * 37.41148 * 10 9 8 12 12 H 1.09001 * 110.38915 * 219.08783 * 11 10 9 13 13 N 1.46504 * 110.30846 * 96.96018 * 11 10 9 14 14 C 1.46497 * 119.99898 * 304.28510 * 13 11 10 15 15 C 1.34771 * 119.99670 * 124.28073 * 13 11 10 16 16 O 1.21284 * 120.00353 * 0.02562 * 15 13 11 17 17 C 1.50703 * 119.99952 * 179.97438 * 15 13 11 18 18 S 1.80990 * 109.47384 * 180.02562 * 17 15 13 19 19 C 1.76199 * 100.00278 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99888 * 359.97438 * 19 18 17 21 21 C 1.38797 * 120.00452 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00292 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99660 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 269.99524 * 23 21 19 25 25 H 1.48503 * 109.47261 * 149.99704 * 23 21 19 26 26 H 1.48500 * 109.47454 * 29.99697 * 23 21 19 27 27 C 1.47905 * 111.00244 * 170.00224 * 8 7 6 28 28 H 1.08994 * 109.47084 * 270.16371 * 1 2 3 29 29 H 1.08997 * 109.47133 * 30.16664 * 1 2 3 30 30 H 1.09006 * 109.47412 * 150.16198 * 1 2 3 31 31 H 1.08007 * 126.77258 * 359.96201 * 3 2 1 32 32 H 1.09003 * 109.47308 * 330.03178 * 7 6 5 33 33 H 1.08998 * 109.47639 * 210.03131 * 7 6 5 34 34 H 1.09000 * 110.66459 * 318.71648 * 9 8 7 35 35 H 1.09009 * 110.66926 * 81.67229 * 9 8 7 36 36 H 1.09004 * 110.72116 * 279.05751 * 10 9 8 37 37 H 1.08994 * 110.72811 * 155.77280 * 10 9 8 38 38 H 1.08997 * 109.47000 * 269.99835 * 14 13 11 39 39 H 1.08999 * 109.47159 * 29.99895 * 14 13 11 40 40 H 1.08996 * 109.46926 * 149.99671 * 14 13 11 41 41 H 1.09001 * 109.47050 * 59.99941 * 17 15 13 42 42 H 1.08999 * 109.47014 * 300.00996 * 17 15 13 43 43 H 0.96997 * 119.99773 * 180.02562 * 22 21 19 44 44 H 1.09000 * 109.91372 * 26.48865 * 27 8 7 45 45 H 1.09003 * 110.08204 * 265.28970 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3411 1.0672 0.0000 4 8 3.5877 0.5746 -0.0053 5 7 3.5878 -0.6346 -0.0034 6 6 2.3776 -1.1140 0.0037 7 6 1.9826 -2.5683 0.0074 8 7 1.8612 -3.0391 1.3936 9 6 3.1972 -3.1791 2.0273 10 6 2.9291 -4.1421 3.2111 11 6 1.8963 -5.1317 2.6246 12 1 1.1443 -5.3833 3.3724 13 7 2.5669 -6.3450 2.1507 14 6 3.6520 -6.2472 1.1714 15 6 2.1854 -7.5511 2.6158 16 8 1.2868 -7.6320 3.4262 17 6 2.8748 -8.7992 2.1279 18 16 2.1420 -10.2463 2.9308 19 6 3.1089 -11.5247 2.1991 20 1 3.8800 -11.2769 1.4847 21 6 2.8797 -12.8503 2.5408 22 7 3.6024 -13.8053 1.9946 23 14 1.5455 -13.2790 3.7760 24 1 2.1215 -13.2851 5.1448 25 1 0.9958 -14.6229 3.4644 26 1 0.4585 -12.2701 3.7008 27 6 1.2478 -4.3840 1.4449 28 1 -0.3633 0.0029 1.0276 29 1 -0.3633 0.8885 -0.5164 30 1 -0.3634 -0.8915 -0.5113 31 1 2.0576 2.1094 -0.0006 32 1 2.7437 -3.1529 -0.5094 33 1 1.0260 -2.6864 -0.5015 34 1 3.9102 -3.6172 1.3289 35 1 3.5558 -2.2144 2.3864 36 1 2.5078 -3.6026 4.0593 37 1 3.8422 -4.6631 3.4990 38 1 3.2386 -6.3017 0.1643 39 1 4.1726 -5.2982 1.2995 40 1 4.3522 -7.0689 1.3217 41 1 3.9360 -8.7468 2.3710 42 1 2.7533 -8.8828 1.0479 43 1 3.4418 -14.7317 2.2331 44 1 1.4436 -4.9171 0.5145 45 1 0.1729 -4.2993 1.6048 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494801769.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:53 Heat of formation + Delta-G solvation = 19.700937 kcal Electronic energy + Delta-G solvation = -26808.241807 eV Core-core repulsion = 22954.939189 eV Total energy + Delta-G solvation = -3853.302618 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.86463 -41.48938 -39.66731 -36.77042 -35.59364 -34.68326 -33.53618 -32.35133 -30.88428 -29.68893 -28.91892 -27.94069 -27.87550 -26.84267 -22.97887 -22.56678 -22.30981 -21.73861 -20.40102 -19.63943 -18.59791 -18.56518 -18.24029 -17.41514 -17.10722 -16.99741 -16.64867 -16.23619 -15.87624 -15.49538 -15.21668 -14.92615 -14.74471 -14.34819 -14.20212 -14.02632 -13.98988 -13.79853 -13.68402 -13.36171 -13.26683 -13.14785 -13.04093 -12.88510 -12.74470 -12.70491 -12.59384 -12.38036 -11.99824 -11.92391 -11.87206 -11.18206 -10.99956 -10.92832 -10.54604 -10.19650 -9.86787 -9.53074 -9.01812 -8.52625 -6.23835 0.62470 0.95326 1.22693 1.30693 1.44393 1.46487 1.52408 1.98870 2.24001 2.47378 2.66188 2.85522 2.90280 3.26716 3.39184 3.48737 3.61167 3.71683 3.99145 4.00919 4.05006 4.12208 4.22990 4.24532 4.30360 4.37460 4.40659 4.49474 4.51461 4.55826 4.74811 4.80362 4.83181 4.88515 4.92885 4.94710 4.98700 5.04347 5.06185 5.36436 5.40995 5.69457 5.72456 5.80442 6.10013 6.15216 6.92389 7.02457 7.36281 8.59651 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032593 B = 0.002011 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.866777 B =13920.510000 C =14183.801026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.200 4.200 3 C -0.058 4.058 4 O 0.087 5.913 5 N -0.392 5.392 6 C 0.015 3.985 7 C 0.125 3.875 8 N -0.508 5.508 9 C 0.043 3.957 10 C -0.124 4.124 11 C 0.129 3.871 12 H 0.094 0.906 13 N -0.601 5.601 14 C 0.064 3.936 15 C 0.536 3.464 16 O -0.558 6.558 17 C -0.106 4.106 18 S -0.175 6.175 19 C -0.528 4.528 20 H 0.062 0.938 21 C 0.045 3.955 22 N -0.916 5.916 23 Si 0.915 3.085 24 H -0.262 1.262 25 H -0.259 1.259 26 H -0.237 1.237 27 C 0.037 3.963 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.255 0.745 32 H 0.053 0.947 33 H 0.111 0.889 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.277 0.723 44 H 0.060 0.940 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.109 33.666 -5.795 34.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.204 4.204 3 C -0.138 4.138 4 O 0.022 5.978 5 N -0.098 5.098 6 C -0.144 4.144 7 C -0.003 4.003 8 N -0.233 5.233 9 C -0.085 4.085 10 C -0.163 4.163 11 C 0.025 3.975 12 H 0.112 0.888 13 N -0.335 5.335 14 C -0.078 4.078 15 C 0.324 3.676 16 O -0.436 6.436 17 C -0.257 4.257 18 S 0.052 5.948 19 C -0.676 4.676 20 H 0.080 0.920 21 C -0.160 4.160 22 N -0.554 5.554 23 Si 0.736 3.264 24 H -0.187 1.187 25 H -0.183 1.183 26 H -0.161 1.161 27 C -0.092 4.092 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.271 0.729 32 H 0.071 0.929 33 H 0.129 0.871 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.468 33.200 -4.401 33.788 hybrid contribution 0.746 -1.136 -1.092 1.743 sum -3.723 32.064 -5.493 32.743 Atomic orbital electron populations 1.20124 0.85772 1.03873 1.03155 1.21651 0.99878 0.91074 1.07832 1.26537 0.81810 1.02709 1.02763 1.84771 1.30575 1.15080 1.67383 1.73847 1.23375 0.92198 1.20344 1.23498 0.88799 0.98780 1.03314 1.20513 1.02361 0.87260 0.90204 1.64761 1.19095 1.23754 1.15689 1.23285 0.90247 0.99348 0.95605 1.22818 0.99146 0.95981 0.98370 1.21922 0.95397 0.83584 0.96603 0.88823 1.47867 1.36801 1.04701 1.44100 1.22151 0.89293 1.04570 0.91788 1.20017 0.82473 0.84651 0.80495 1.90676 1.31660 1.86619 1.34678 1.23284 1.03808 0.93863 1.04744 1.84702 1.50528 0.99208 1.60361 1.22440 1.22002 0.93317 1.29844 0.91979 1.25569 0.97935 0.95170 0.97362 1.70015 1.40664 1.00981 1.43724 0.85864 0.80890 0.79871 0.79726 1.18719 1.18298 1.16052 1.23149 1.00501 0.87846 0.97667 0.90658 0.89263 0.91101 0.72898 0.92903 0.87093 0.92772 0.90789 0.89148 0.90085 0.91201 0.89097 0.90169 0.87111 0.87114 0.91357 0.92158 0.88552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.37 71.24 0.74 0.21 16 2 C -0.20 -2.46 6.32 -19.74 -0.12 -2.58 16 3 C -0.06 -0.55 12.26 67.17 0.82 0.28 16 4 O 0.09 1.42 11.20 71.65 0.80 2.22 16 5 N -0.39 -7.82 12.07 -49.55 -0.60 -8.42 16 6 C 0.01 0.25 6.43 43.58 0.28 0.53 16 7 C 0.13 1.89 5.22 85.56 0.45 2.34 16 8 N -0.51 -8.43 5.23 -887.57 -4.65 -13.07 16 9 C 0.04 0.73 5.75 86.65 0.50 1.22 16 10 C -0.12 -2.27 6.14 31.80 0.20 -2.07 16 11 C 0.13 2.82 3.44 45.87 0.16 2.98 16 12 H 0.09 2.51 6.97 -2.39 -0.02 2.49 16 13 N -0.60 -14.97 2.72 -817.69 -2.23 -17.19 16 14 C 0.06 1.17 9.22 127.77 1.18 2.35 16 15 C 0.54 18.66 7.69 87.66 0.67 19.33 16 16 O -0.56 -23.76 15.22 -3.04 -0.05 -23.81 16 17 C -0.11 -4.03 4.71 71.24 0.34 -3.70 16 18 S -0.17 -8.83 18.55 -56.49 -1.05 -9.88 16 19 C -0.53 -30.75 10.04 67.95 0.68 -30.06 16 20 H 0.06 3.80 8.03 -2.91 -0.02 3.78 16 21 C 0.05 2.65 5.50 84.86 0.47 3.11 16 22 N -0.92 -55.72 13.97 21.65 0.30 -55.42 16 23 Si 0.91 45.02 27.74 68.60 1.90 46.92 16 24 H -0.26 -12.62 7.11 99.48 0.71 -11.91 16 25 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.24 -11.62 6.74 99.48 0.67 -10.95 16 27 C 0.04 0.65 6.18 86.44 0.53 1.18 16 28 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.07 0.53 7.65 -2.38 -0.02 0.51 16 31 H 0.26 -0.11 8.06 -2.91 -0.02 -0.13 16 32 H 0.05 0.83 7.83 -2.39 -0.02 0.81 16 33 H 0.11 1.33 7.59 -2.39 -0.02 1.31 16 34 H 0.05 0.90 5.66 -2.39 -0.01 0.89 16 35 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.08 1.50 7.89 -2.39 -0.02 1.49 16 38 H 0.07 1.12 7.92 -2.39 -0.02 1.11 16 39 H 0.09 1.37 4.76 -2.39 -0.01 1.35 16 40 H 0.08 1.51 6.44 -2.39 -0.02 1.49 16 41 H 0.11 3.89 7.40 -2.39 -0.02 3.88 16 42 H 0.11 3.89 8.11 -2.40 -0.02 3.87 16 43 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 44 H 0.06 1.04 6.88 -2.39 -0.02 1.02 16 45 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -75.80 377.13 2.30 -73.51 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 0.97 Total: 10.01 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: 6.89 Total: -4.87 kcal Atomic # 7 Polarization: -86.93 SS G_CDS: -7.17 Total: -94.10 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: 0.76 Total: -21.58 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.90 Total: 46.92 kcal Atomic # 16 Polarization: -8.83 SS G_CDS: -1.05 Total: -9.88 kcal Total: -75.80 2.30 -73.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494801769.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.209 kcal (2) G-P(sol) polarization free energy of solvation -75.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds