Wall clock time and date at job start Sat Apr 11 2020 05:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37481 * 123.35095 * 2 1 4 4 C 1.33818 * 115.09929 * 179.83611 * 3 2 1 5 5 S 1.70615 * 110.95524 * 0.41893 * 4 3 2 6 6 C 1.36638 * 123.35334 * 180.29420 * 2 1 3 7 7 C 1.46582 * 125.46021 * 359.97438 * 6 2 1 8 8 O 1.21706 * 119.99546 * 350.29825 * 7 6 2 9 9 N 1.34776 * 120.00742 * 170.30168 * 7 6 2 10 10 C 1.46511 * 119.99282 * 0.37520 * 9 7 6 11 11 C 1.46493 * 120.00526 * 180.37436 * 9 7 6 12 12 C 1.52999 * 109.47108 * 89.99817 * 11 9 7 13 13 C 1.52995 * 109.47306 * 180.02562 * 12 11 9 14 14 N 1.46899 * 109.47385 * 180.02562 * 13 12 11 15 15 C 1.46895 * 111.00169 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47418 * 179.97438 * 15 14 13 17 17 O 1.21298 * 119.99737 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00636 * 180.02562 * 16 15 14 19 19 C 1.37098 * 120.00438 * 179.97438 * 18 16 15 20 20 H 1.08000 * 119.99950 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99808 * 179.97438 * 19 18 16 22 22 N 1.31403 * 120.00409 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99551 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47048 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.46947 * 120.00039 * 23 21 19 26 26 H 1.48500 * 109.46929 * 240.00095 * 23 21 19 27 27 H 1.09003 * 109.47027 * 269.70702 * 1 2 3 28 28 H 1.08997 * 109.47010 * 29.70118 * 1 2 3 29 29 H 1.08994 * 109.47285 * 149.71025 * 1 2 3 30 30 H 1.08003 * 122.44682 * 0.02562 * 3 2 1 31 31 H 1.07999 * 124.52000 * 180.18153 * 4 3 2 32 32 H 1.08995 * 109.47079 * 83.50439 * 10 9 7 33 33 H 1.09003 * 109.46509 * 203.49977 * 10 9 7 34 34 H 1.08993 * 109.46964 * 323.49460 * 10 9 7 35 35 H 1.09000 * 109.47107 * 209.99966 * 11 9 7 36 36 H 1.08996 * 109.47426 * 329.99897 * 11 9 7 37 37 H 1.09000 * 109.47257 * 300.00056 * 12 11 9 38 38 H 1.09008 * 109.47171 * 60.00419 * 12 11 9 39 39 H 1.09007 * 109.47293 * 300.00204 * 13 12 11 40 40 H 1.08996 * 109.47412 * 59.99967 * 13 12 11 41 41 H 1.00902 * 110.99930 * 56.04192 * 14 13 12 42 42 H 1.08999 * 109.47488 * 299.99607 * 15 14 13 43 43 H 1.09001 * 109.47199 * 59.99847 * 15 14 13 44 44 H 0.97006 * 119.99608 * 0.02562 * 18 16 15 45 45 H 0.96999 * 120.00539 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2628 1.1484 0.0000 4 6 3.5871 0.9564 0.0035 5 16 3.9624 -0.7080 -0.0047 6 6 2.2582 -1.1413 -0.0059 7 6 1.7285 -2.5080 -0.0123 8 8 0.5399 -2.7007 0.1648 9 7 2.5575 -3.5513 -0.2144 10 6 3.9896 -3.3198 -0.4193 11 6 2.0267 -4.9166 -0.2290 12 6 1.6221 -5.2912 -1.6562 13 6 1.0671 -6.7169 -1.6714 14 7 0.6792 -7.0768 -3.0418 15 6 0.1412 -8.4426 -3.0951 16 6 -0.2455 -8.7753 -4.5132 17 8 -0.0888 -7.9549 -5.3928 18 7 -0.7664 -9.9838 -4.8039 19 6 -1.1188 -10.2861 -6.0939 20 1 -0.9792 -9.5557 -6.8771 21 6 -1.6553 -11.5324 -6.3936 22 7 -1.8255 -12.4209 -5.4406 23 14 -2.1347 -11.9445 -8.1514 24 1 -1.8454 -10.7820 -9.0289 25 1 -1.3552 -13.1207 -8.6141 26 1 -3.5850 -12.2583 -8.2083 27 1 -0.3633 -0.0053 1.0277 28 1 -0.3633 0.8926 -0.5092 29 1 -0.3633 -0.8873 -0.5183 30 1 1.8201 2.1335 0.0004 31 1 4.3205 1.7491 0.0068 32 1 4.4833 -3.2192 0.5472 33 1 4.4198 -4.1621 -0.9612 34 1 4.1309 -2.4061 -0.9966 35 1 2.7917 -5.6077 0.1250 36 1 1.1551 -4.9746 0.4228 37 1 0.8571 -4.6002 -2.0102 38 1 2.4938 -5.2333 -2.3081 39 1 1.8319 -7.4083 -1.3172 40 1 0.1954 -6.7745 -1.0197 41 1 1.4554 -6.9691 -3.6774 42 1 0.8996 -9.1457 -2.7507 43 1 -0.7372 -8.5125 -2.4535 44 1 -0.8928 -10.6394 -4.1002 45 1 -2.1998 -13.2910 -5.6498 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498507637.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:04 Heat of formation + Delta-G solvation = -35.425985 kcal Electronic energy + Delta-G solvation = -25736.352131 eV Core-core repulsion = 21880.659030 eV Total energy + Delta-G solvation = -3855.693101 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.34375 -38.39761 -38.21177 -36.49067 -35.46417 -33.86380 -32.21550 -31.21212 -31.02414 -28.73337 -27.78649 -26.59758 -24.93931 -23.82985 -23.24682 -21.69574 -20.78998 -19.18434 -18.72070 -18.38231 -17.85419 -16.51272 -16.36815 -15.97628 -15.90739 -15.61528 -15.29003 -14.63664 -14.38735 -14.25883 -14.04978 -13.84688 -13.59210 -13.56503 -13.45874 -13.35214 -13.16163 -12.62504 -12.52041 -12.37988 -12.06495 -11.93936 -11.79666 -11.67029 -11.46162 -11.34351 -11.04850 -10.94827 -10.74446 -10.32431 -10.20299 -10.11062 -9.49672 -9.24428 -9.07128 -8.63441 -8.42631 -8.01511 -7.93019 -6.39452 -3.80114 0.18331 1.14236 1.56084 2.04490 2.57777 2.90891 3.18170 3.28486 3.36099 3.93950 4.12040 4.18225 4.36522 4.52795 4.54903 4.80876 4.84335 4.87618 4.98693 5.09050 5.13965 5.17061 5.22984 5.26850 5.28843 5.40502 5.48265 5.49602 5.62374 5.68340 5.71277 5.82225 5.98394 6.02069 6.04532 6.11832 6.19572 6.28313 6.33217 6.97360 7.26853 7.57719 7.70832 7.84212 8.09326 8.64104 9.20510 9.57156 10.08830 10.78438 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025628 B = 0.001611 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.309226 B =17377.735442 C =17628.121417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.017 4.017 3 C -0.149 4.149 4 C -0.253 4.253 5 S 0.214 5.786 6 C -0.279 4.279 7 C 0.589 3.411 8 O -0.519 6.519 9 N -0.612 5.612 10 C 0.062 3.938 11 C 0.120 3.880 12 C -0.132 4.132 13 C 0.064 3.936 14 N -0.669 5.669 15 C 0.051 3.949 16 C 0.441 3.559 17 O -0.583 6.583 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.141 0.859 31 H 0.164 0.836 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.026 0.974 40 H 0.073 0.927 41 H 0.348 0.652 42 H 0.043 0.957 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.855 22.785 17.103 32.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.032 4.032 3 C -0.180 4.180 4 C -0.390 4.390 5 S 0.484 5.516 6 C -0.399 4.399 7 C 0.378 3.622 8 O -0.397 6.397 9 N -0.345 5.345 10 C -0.084 4.084 11 C -0.003 4.003 12 C -0.171 4.171 13 C -0.067 4.067 14 N -0.302 5.302 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.467 6.467 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.158 0.842 31 H 0.181 0.819 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.044 0.956 40 H 0.091 0.909 41 H 0.167 0.833 42 H 0.061 0.939 43 H 0.104 0.896 44 H 0.225 0.775 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.030 22.542 16.634 31.791 hybrid contribution -0.586 -0.185 -0.327 0.696 sum 14.444 22.357 16.307 31.214 Atomic orbital electron populations 1.20702 0.88602 1.03749 1.03126 1.19541 0.97901 0.90514 0.95261 1.19919 0.92679 0.99543 1.05871 1.25821 1.00752 1.04769 1.07660 1.83472 1.04137 0.95873 1.68140 1.24371 0.97185 0.97263 1.21034 1.16971 0.85752 0.82805 0.76709 1.90825 1.14769 1.84675 1.49394 1.47646 1.07922 1.06908 1.72067 1.22051 0.81163 1.02846 1.02300 1.21507 1.00210 0.80543 0.98008 1.21907 1.01646 0.97459 0.96123 1.21851 0.98973 0.94562 0.91282 1.60028 1.39108 1.24706 1.06319 1.21669 1.00004 0.89216 0.97277 1.19835 0.84415 0.83551 0.89550 1.90523 1.59082 1.48576 1.48546 1.41872 1.55133 1.12841 1.10298 1.19763 1.37980 0.99388 0.85674 0.87871 1.25263 0.97443 0.95573 0.99735 1.69616 1.45365 1.06752 1.32628 0.85797 0.78060 0.78482 0.81984 1.19224 1.20796 1.20746 0.90490 0.91601 0.89210 0.84172 0.81852 0.91490 0.88901 0.90536 0.90248 0.89244 0.90303 0.91902 0.95575 0.90854 0.83297 0.93915 0.89558 0.77455 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 9.44 36.01 0.34 -0.64 16 2 C -0.02 -0.17 5.90 -105.48 -0.62 -0.79 16 3 C -0.15 -1.15 9.97 -41.41 -0.41 -1.57 16 4 C -0.25 -1.65 10.92 29.18 0.32 -1.33 16 5 S 0.21 1.39 17.92 -107.50 -1.93 -0.53 16 6 C -0.28 -2.80 6.22 -36.80 -0.23 -3.03 16 7 C 0.59 6.99 7.60 -12.90 -0.10 6.89 16 8 O -0.52 -7.74 13.99 5.18 0.07 -7.67 16 9 N -0.61 -5.76 2.87 -183.16 -0.53 -6.29 16 10 C 0.06 0.37 8.92 59.85 0.53 0.90 16 11 C 0.12 1.12 5.38 -4.05 -0.02 1.09 16 12 C -0.13 -1.49 5.80 -26.73 -0.16 -1.64 16 13 C 0.06 0.80 5.68 -3.83 -0.02 0.77 16 14 N -0.67 -11.30 6.13 -115.06 -0.70 -12.01 16 15 C 0.05 0.93 6.17 -4.98 -0.03 0.90 16 16 C 0.44 10.72 7.82 -10.99 -0.09 10.63 16 17 O -0.58 -16.31 15.78 5.54 0.09 -16.22 16 18 N -0.56 -14.62 5.29 -10.96 -0.06 -14.68 16 19 C -0.30 -8.48 9.68 -14.93 -0.14 -8.62 16 20 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.84 13.05 55.50 0.72 -24.11 16 23 Si 0.93 21.32 29.55 -169.99 -5.02 16.29 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 1.06 6.27 -51.93 -0.33 0.73 16 30 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 31 H 0.16 0.68 8.06 -52.49 -0.42 0.25 16 32 H 0.07 0.30 7.76 -51.93 -0.40 -0.10 16 33 H 0.09 0.41 8.02 -51.93 -0.42 0.00 16 34 H 0.08 0.45 4.64 -23.54 -0.11 0.34 16 35 H 0.08 0.55 8.07 -51.93 -0.42 0.13 16 36 H 0.09 0.95 7.41 -51.93 -0.39 0.56 16 37 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 39 H 0.03 0.29 8.14 -51.92 -0.42 -0.14 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.35 5.96 8.43 -39.29 -0.33 5.63 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 44 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 45 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 386.14 15.07 5.82 5.82 Total: -1.00 -34.66 386.14 -8.71 -43.37 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -6.45 Total: 11.98 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -0.73 Total: 4.04 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: -0.56 Total: -57.09 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: 0.16 Total: -23.88 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -1.93 Total: -0.53 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.66 -8.71 -43.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498507637.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.943 kcal (2) G-P(sol) polarization free energy of solvation -34.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds