Wall clock time and date at job start Sat Apr 11 2020 05:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30176 * 126.80368 * 2 1 4 4 O 1.20926 * 111.60194 * 180.25489 * 3 2 1 5 5 C 1.34042 * 111.57011 * 359.74478 * 4 3 2 6 6 C 1.35454 * 106.44470 * 359.97438 * 5 4 3 7 7 C 1.50703 * 128.00636 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.46458 * 94.54109 * 7 6 5 9 9 C 1.48566 * 111.00106 * 289.41353 * 8 7 6 10 10 C 1.54376 * 104.59077 * 159.04626 * 9 8 7 11 11 C 1.54262 * 105.15361 * 336.09647 * 10 9 8 12 12 C 1.53000 * 110.32675 * 241.15888 * 11 10 9 13 13 N 1.46503 * 110.32092 * 118.94799 * 11 10 9 14 14 C 1.34770 * 119.99988 * 61.45890 * 13 11 10 15 15 O 1.21285 * 120.00172 * 359.97438 * 14 13 11 16 16 C 1.50702 * 120.00023 * 179.97438 * 14 13 11 17 17 S 1.81007 * 109.46887 * 179.97438 * 16 14 13 18 18 C 1.76206 * 99.99683 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99955 * 0.02562 * 18 17 16 20 20 C 1.38797 * 120.00102 * 179.97438 * 18 17 16 21 21 N 1.31634 * 119.99868 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00048 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47203 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46961 * 120.00268 * 22 20 18 25 25 H 1.48501 * 109.46826 * 239.99886 * 22 20 18 26 26 C 1.48553 * 111.00388 * 44.83843 * 8 7 6 27 27 H 1.09008 * 109.47135 * 275.68890 * 1 2 3 28 28 H 1.08997 * 109.47294 * 35.68432 * 1 2 3 29 29 H 1.09002 * 109.47398 * 155.68660 * 1 2 3 30 30 H 1.07999 * 126.77800 * 179.97438 * 5 4 3 31 31 H 1.09001 * 109.47196 * 334.54127 * 7 6 5 32 32 H 1.08996 * 109.46781 * 214.53699 * 7 6 5 33 33 H 1.09005 * 110.40682 * 40.26754 * 9 8 7 34 34 H 1.08999 * 110.51474 * 277.87854 * 9 8 7 35 35 H 1.08998 * 110.32480 * 95.05288 * 10 9 8 36 36 H 1.09008 * 110.31934 * 217.15273 * 10 9 8 37 37 H 1.08999 * 109.46817 * 58.54504 * 12 11 10 38 38 H 1.09000 * 109.47229 * 178.54688 * 12 11 10 39 39 H 1.09000 * 109.46840 * 298.54612 * 12 11 10 40 40 H 0.96997 * 119.99831 * 241.45332 * 13 11 10 41 41 H 1.08997 * 109.47060 * 299.99744 * 16 14 13 42 42 H 1.09001 * 109.47045 * 60.00488 * 16 14 13 43 43 H 0.96992 * 120.00099 * 179.97438 * 21 20 18 44 44 H 1.08995 * 110.41440 * 319.73760 * 26 8 7 45 45 H 1.09003 * 110.40845 * 82.06425 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7252 -0.0050 5 6 3.6024 -0.6069 -0.0035 6 6 2.3539 -1.1321 0.0038 7 6 1.9589 -2.5865 0.0078 8 7 1.7322 -3.0284 1.3903 9 6 3.0120 -3.1073 2.1407 10 6 2.5966 -3.0405 3.6260 11 6 1.2266 -2.3316 3.6301 12 6 1.3037 -1.0307 4.4319 13 7 0.1987 -3.2141 4.1877 14 6 0.3022 -3.6502 5.4587 15 8 1.2465 -3.3125 6.1408 16 6 -0.7554 -4.5576 6.0324 17 16 -0.3357 -4.9659 7.7452 18 6 -1.6991 -6.0041 8.1551 19 1 -2.4645 -6.2055 7.4203 20 6 -1.7888 -6.5639 9.4220 21 7 -0.8556 -6.3188 10.3174 22 14 -3.2338 -7.6650 9.8563 23 1 -4.1372 -7.7819 8.6836 24 1 -2.7342 -9.0121 10.2319 25 1 -3.9783 -7.0770 10.9988 26 6 0.9286 -2.0312 2.1430 27 1 -0.3634 0.1019 1.0227 28 1 -0.3634 0.8347 -0.5994 29 1 -0.3634 -0.9365 -0.4231 30 1 4.5338 -1.1536 -0.0074 31 1 2.7568 -3.1808 -0.4375 32 1 1.0437 -2.7159 -0.5698 33 1 3.6540 -2.2636 1.8871 34 1 3.5209 -4.0479 1.9301 35 1 2.5044 -4.0450 4.0389 36 1 3.3237 -2.4626 4.1967 37 1 2.0630 -0.3806 3.9973 38 1 0.3365 -0.5289 4.4042 39 1 1.5666 -1.2561 5.4654 40 1 -0.5563 -3.4845 3.6421 41 1 -1.7211 -4.0528 6.0051 42 1 -0.8072 -5.4732 5.4433 43 1 -0.9184 -6.7097 11.2029 44 1 1.2444 -1.0192 1.8898 45 1 -0.1329 -2.1613 1.9322 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500184392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:06 Heat of formation + Delta-G solvation = 36.692790 kcal Electronic energy + Delta-G solvation = -27476.140584 eV Core-core repulsion = 23623.574788 eV Total energy + Delta-G solvation = -3852.565796 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.38602 -40.42806 -38.51701 -35.80730 -34.34262 -32.57978 -32.41530 -31.38911 -29.90221 -29.23897 -28.43599 -27.37040 -25.48246 -25.10949 -22.63584 -21.86543 -21.22887 -20.71477 -19.31158 -18.10442 -17.87745 -17.78390 -16.59158 -16.29185 -15.79978 -15.43658 -15.20814 -14.83939 -14.79483 -14.30972 -14.05372 -13.81349 -13.58184 -13.33344 -13.22915 -13.01906 -12.96719 -12.80619 -12.67270 -12.38500 -12.06068 -11.94280 -11.88561 -11.44081 -11.35087 -11.06539 -11.02789 -10.97998 -10.86007 -10.73855 -10.25215 -9.92445 -9.78729 -9.21230 -9.06706 -8.99373 -8.78407 -8.21199 -6.47948 -6.20861 -3.90711 1.05572 1.73862 2.83344 3.05836 3.14270 3.22145 3.29057 3.33976 3.65482 3.73643 3.76049 4.04822 4.21185 4.22833 4.39742 4.48685 4.67416 4.93773 4.95232 4.98736 5.05196 5.09868 5.14455 5.17233 5.23071 5.24000 5.32107 5.36378 5.37222 5.44807 5.54756 5.63632 5.70497 5.73076 5.79582 5.92222 5.94536 6.16824 6.19750 6.26823 6.46313 6.56036 6.80585 7.61097 7.80522 7.85996 8.36624 8.68881 9.24807 10.86623 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028914 B = 0.002199 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.148185 B =12732.448781 C =12877.070965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.026 3.974 3 N -0.364 5.364 4 O 0.098 5.902 5 C -0.049 4.049 6 C -0.235 4.235 7 C 0.117 3.883 8 N -0.494 5.494 9 C 0.027 3.973 10 C -0.122 4.122 11 C 0.178 3.822 12 C -0.159 4.159 13 N -0.724 5.724 14 C 0.534 3.466 15 O -0.515 6.515 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.023 3.977 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.215 0.785 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.045 0.955 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.085 0.915 40 H 0.398 0.602 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.267 0.733 44 H 0.069 0.931 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.167 10.474 -25.152 27.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.133 4.133 3 N -0.069 5.069 4 O 0.033 5.967 5 C -0.131 4.131 6 C -0.240 4.240 7 C -0.012 4.012 8 N -0.216 5.216 9 C -0.101 4.101 10 C -0.161 4.161 11 C 0.091 3.909 12 C -0.217 4.217 13 N -0.379 5.379 14 C 0.320 3.680 15 O -0.389 6.389 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.682 4.682 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.105 4.105 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.231 0.769 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.063 0.937 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.232 0.768 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.323 11.792 -23.871 27.613 hybrid contribution -1.932 -1.303 -0.787 2.460 sum 5.391 10.489 -24.657 27.333 Atomic orbital electron populations 1.20316 0.85867 1.03932 1.03753 1.23545 0.99075 0.88307 1.02412 1.73884 0.89423 1.24168 1.19460 1.84845 1.21592 1.23024 1.67191 1.25917 1.00730 0.83749 1.02712 1.22096 0.92554 0.99472 1.09904 1.20775 1.02569 0.85860 0.91945 1.65768 1.13423 1.41600 1.00765 1.23248 0.91516 1.01363 0.93950 1.22683 0.96033 1.02651 0.94765 1.20894 0.88446 0.90180 0.91407 1.22201 1.01520 0.95180 1.02831 1.46119 1.26785 1.51209 1.13762 1.20238 0.86827 0.80102 0.80785 1.90667 1.32828 1.56384 1.59018 1.23538 1.00123 1.00825 1.05910 1.85364 1.33948 1.62700 1.01362 1.22912 1.09948 1.34161 1.01182 0.90927 1.24993 0.96968 0.96414 0.95273 1.70028 1.32758 1.42580 1.04970 0.86122 0.81200 0.79744 0.78462 1.19624 1.20584 1.20591 1.23728 0.99380 0.95486 0.91938 0.89841 0.90405 0.89822 0.76853 0.89161 0.88931 0.93670 0.89676 0.89856 0.90471 0.92576 0.92602 0.89581 0.76768 0.89415 0.89319 0.92274 0.91293 0.89514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 9.29 36.00 0.33 -0.17 16 2 C 0.03 0.22 5.78 -82.10 -0.47 -0.25 16 3 N -0.36 -3.77 12.07 33.42 0.40 -3.36 16 4 O 0.10 0.88 11.20 17.17 0.19 1.08 16 5 C -0.05 -0.31 11.02 29.74 0.33 0.02 16 6 C -0.23 -1.65 3.96 -104.42 -0.41 -2.06 16 7 C 0.12 0.73 6.04 -4.97 -0.03 0.70 16 8 N -0.49 -4.11 5.65 -231.26 -1.31 -5.42 16 9 C 0.03 0.24 6.33 -2.18 -0.01 0.22 16 10 C -0.12 -1.48 5.48 -25.35 -0.14 -1.61 16 11 C 0.18 2.08 1.01 -130.31 -0.13 1.95 16 12 C -0.16 -2.00 8.17 37.16 0.30 -1.69 16 13 N -0.72 -9.56 5.10 -46.21 -0.24 -9.79 16 14 C 0.53 9.64 7.01 -10.99 -0.08 9.56 16 15 O -0.51 -11.02 13.16 5.55 0.07 -10.95 16 16 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 17 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 18 C -0.53 -15.18 9.50 30.94 0.29 -14.89 16 19 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 20 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 21 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 22 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 C 0.02 0.20 4.33 -2.06 -0.01 0.19 16 27 H 0.08 0.51 7.48 -51.92 -0.39 0.12 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.40 7.63 -51.93 -0.40 0.00 16 30 H 0.21 0.57 8.06 -52.49 -0.42 0.15 16 31 H 0.09 0.45 8.08 -51.93 -0.42 0.03 16 32 H 0.09 0.51 7.67 -51.93 -0.40 0.11 16 33 H 0.05 0.35 6.21 -51.93 -0.32 0.02 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.22 7.31 -51.93 -0.38 0.84 16 36 H 0.08 0.96 7.71 -51.92 -0.40 0.56 16 37 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 1.36 6.32 -51.93 -0.33 1.03 16 40 H 0.40 4.28 8.27 -40.82 -0.34 3.95 16 41 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 42 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 43 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.07 0.62 3.81 -51.93 -0.20 0.42 16 45 H 0.09 0.68 7.76 -51.93 -0.40 0.28 16 LS Contribution 372.68 15.07 5.62 5.62 Total: -1.00 -34.84 372.68 -8.14 -42.97 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -6.47 Total: 1.63 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 0.10 Total: -8.90 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: -0.40 Total: -44.01 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.27 Total: -9.87 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.84 -8.14 -42.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500184392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.665 kcal (2) G-P(sol) polarization free energy of solvation -34.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds