Wall clock time and date at job start Sat Apr 11 2020 05:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30171 * 126.80483 * 2 1 4 4 O 1.20917 * 111.60422 * 180.02562 * 3 2 1 5 5 C 1.34040 * 111.57072 * 359.76489 * 4 3 2 6 6 C 1.35449 * 106.44363 * 0.37890 * 5 4 3 7 7 C 1.50696 * 128.00807 * 179.91192 * 6 5 4 8 8 N 1.46900 * 109.47238 * 259.67746 * 7 6 5 9 9 C 1.48534 * 111.00336 * 52.60164 * 8 7 6 10 10 C 1.54933 * 103.22918 * 159.72037 * 9 8 7 11 11 C 1.54591 * 102.92615 * 322.58639 * 10 9 8 12 12 C 1.52999 * 110.39407 * 140.91134 * 11 10 9 13 13 N 1.46497 * 110.31159 * 263.04347 * 11 10 9 14 14 C 1.34772 * 119.99605 * 295.71241 * 13 11 10 15 15 O 1.21277 * 120.00532 * 0.02562 * 14 13 11 16 16 C 1.50703 * 119.99805 * 179.97438 * 14 13 11 17 17 S 1.81003 * 109.47108 * 179.97438 * 16 14 13 18 18 C 1.76203 * 99.99857 * 180.02562 * 17 16 14 19 19 H 1.07994 * 120.00120 * 359.97438 * 18 17 16 20 20 C 1.38800 * 119.99787 * 180.02562 * 18 17 16 21 21 N 1.31626 * 120.00215 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99725 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46839 * 60.00147 * 22 20 18 24 24 H 1.48503 * 109.46947 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47394 * 299.99824 * 22 20 18 26 26 C 1.47906 * 111.00463 * 169.99874 * 8 7 6 27 27 H 1.08999 * 109.47058 * 269.97555 * 1 2 3 28 28 H 1.08997 * 109.46817 * 29.97380 * 1 2 3 29 29 H 1.08998 * 109.47488 * 149.97115 * 1 2 3 30 30 H 1.08000 * 126.78224 * 180.28393 * 5 4 3 31 31 H 1.08996 * 109.47462 * 139.67940 * 7 6 5 32 32 H 1.09001 * 109.47050 * 19.67535 * 7 6 5 33 33 H 1.09004 * 110.66939 * 278.16097 * 9 8 7 34 34 H 1.09002 * 110.66619 * 41.28493 * 9 8 7 35 35 H 1.09008 * 110.72472 * 204.22643 * 10 9 8 36 36 H 1.09006 * 110.87315 * 81.02185 * 10 9 8 37 37 H 1.09003 * 109.47309 * 304.24448 * 12 11 10 38 38 H 1.09008 * 109.46710 * 64.23734 * 12 11 10 39 39 H 1.08996 * 109.47239 * 184.23646 * 12 11 10 40 40 H 0.96997 * 120.00267 * 115.71330 * 13 11 10 41 41 H 1.08999 * 109.47204 * 300.00493 * 16 14 13 42 42 H 1.09003 * 109.46836 * 60.00182 * 16 14 13 43 43 H 0.96998 * 120.00381 * 180.02562 * 21 20 18 44 44 H 1.09003 * 109.91125 * 333.50977 * 26 8 7 45 45 H 1.08999 * 109.91852 * 94.80110 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7252 -0.0005 5 6 3.6024 -0.6069 0.0042 6 6 2.3539 -1.1321 -0.0007 7 6 1.9590 -2.5864 -0.0002 8 7 1.5973 -2.9960 -1.3638 9 6 2.6739 -2.6498 -2.3269 10 6 2.3865 -3.5824 -3.5302 11 6 1.9165 -4.8890 -2.8506 12 6 0.7657 -5.5164 -3.6399 13 7 3.0305 -5.8338 -2.7397 14 6 3.6035 -6.3335 -3.8524 15 8 3.1972 -6.0008 -4.9456 16 6 4.7500 -7.3050 -3.7384 17 16 5.2967 -7.7902 -5.3943 18 6 6.6034 -8.8948 -4.9736 19 1 6.8396 -9.0818 -3.9365 20 6 7.3300 -9.5237 -5.9752 21 7 7.0425 -9.2954 -7.2392 22 14 8.7158 -10.6942 -5.5292 23 1 8.1751 -11.8158 -4.7198 24 1 9.3291 -11.2309 -6.7705 25 1 9.7442 -9.9670 -4.7427 26 6 1.4351 -4.4636 -1.4510 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3634 -0.8897 -0.5143 30 1 4.5338 -1.1536 0.0092 31 1 1.1047 -2.7307 0.6611 32 1 2.7960 -3.1901 0.3505 33 1 2.6017 -1.6038 -2.6249 34 1 3.6543 -2.8626 -1.9007 35 1 3.2932 -3.7540 -4.1104 36 1 1.5987 -3.1707 -4.1612 37 1 -0.0403 -4.7903 -3.7464 38 1 1.1211 -5.8121 -4.6271 39 1 0.3967 -6.3937 -3.1088 40 1 3.3558 -6.0996 -1.8654 41 1 5.5756 -6.8319 -3.2068 42 1 4.4239 -8.1890 -3.1903 43 1 7.5499 -9.7352 -7.9391 44 1 2.0405 -4.9501 -0.6863 45 1 0.3858 -4.7294 -1.3225 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500184395.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:08 Heat of formation + Delta-G solvation = 33.534395 kcal Electronic energy + Delta-G solvation = -26914.184971 eV Core-core repulsion = 23061.482217 eV Total energy + Delta-G solvation = -3852.702754 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.24431 -40.44652 -38.42953 -35.84732 -34.29238 -32.60187 -32.45563 -31.39924 -30.01641 -29.00271 -28.55003 -27.35683 -25.51960 -24.98129 -22.55014 -21.64662 -21.36612 -20.83640 -19.39531 -17.92725 -17.88755 -17.70148 -16.67134 -16.16452 -16.04633 -15.30584 -15.05882 -14.88209 -14.82586 -14.21789 -14.01810 -13.89423 -13.62579 -13.40244 -13.21659 -13.09796 -12.88515 -12.73559 -12.61730 -12.44331 -12.05216 -11.95315 -11.83155 -11.46878 -11.32068 -11.12238 -11.07870 -11.06291 -10.88579 -10.79353 -10.17369 -9.86459 -9.84058 -9.28451 -9.09116 -8.92880 -8.80851 -8.27397 -6.53001 -6.24359 -3.95133 1.14675 1.85058 2.91738 2.97170 3.04687 3.21012 3.24899 3.27659 3.57028 3.76266 3.89381 4.17635 4.19926 4.21447 4.38250 4.57224 4.70619 4.81141 4.98291 5.05887 5.07962 5.10756 5.12206 5.17819 5.19547 5.26789 5.29762 5.42125 5.52456 5.55393 5.59243 5.68939 5.78419 5.81757 5.83834 5.84422 5.95401 6.09124 6.12734 6.35264 6.39936 6.56787 6.76561 7.56269 7.67204 7.96384 8.31990 8.58707 9.20866 10.82937 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020339 B = 0.002162 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.324343 B =12946.126249 C =13670.148686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.036 3.964 3 N -0.370 5.370 4 O 0.097 5.903 5 C -0.052 4.052 6 C -0.196 4.196 7 C 0.123 3.877 8 N -0.508 5.508 9 C 0.038 3.962 10 C -0.124 4.124 11 C 0.170 3.830 12 C -0.158 4.158 13 N -0.732 5.732 14 C 0.534 3.466 15 O -0.510 6.510 16 C -0.154 4.154 17 S -0.058 6.058 18 C -0.537 4.537 19 H 0.071 0.929 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.037 3.963 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.214 0.786 31 H 0.091 0.909 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.045 0.955 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.086 0.914 39 H 0.054 0.946 40 H 0.395 0.605 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.269 0.731 44 H 0.053 0.947 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.315 14.593 18.208 26.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.124 4.124 3 N -0.076 5.076 4 O 0.034 5.966 5 C -0.135 4.135 6 C -0.201 4.201 7 C -0.005 4.005 8 N -0.232 5.232 9 C -0.090 4.090 10 C -0.163 4.163 11 C 0.083 3.917 12 C -0.216 4.216 13 N -0.388 5.388 14 C 0.321 3.679 15 O -0.383 6.383 16 C -0.305 4.305 17 S 0.169 5.831 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.744 3.256 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.200 1.200 26 C -0.091 4.091 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.109 0.891 30 H 0.230 0.770 31 H 0.109 0.891 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.104 0.896 39 H 0.073 0.927 40 H 0.229 0.771 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.658 16.704 16.064 26.900 hybrid contribution 2.418 -2.593 2.303 4.228 sum -11.240 14.111 18.368 25.746 Atomic orbital electron populations 1.20190 0.85828 1.04330 1.03079 1.23502 0.99114 0.88036 1.01714 1.73866 0.89431 1.24286 1.20049 1.84835 1.21631 1.22824 1.67357 1.25856 1.00694 0.83876 1.03042 1.21084 0.92195 0.97270 1.09501 1.20493 1.00330 0.88284 0.91412 1.64941 1.41312 1.12225 1.04749 1.23246 0.92609 1.00310 0.92796 1.22875 1.03136 0.93403 0.96863 1.21007 0.87058 0.89272 0.94379 1.22199 0.96455 1.00419 1.02577 1.46271 1.35812 1.47610 1.09059 1.20244 0.83078 0.80696 0.83909 1.90668 1.62436 1.58719 1.26520 1.23551 0.98336 1.00191 1.08442 1.85383 1.41980 1.57041 0.98725 1.22820 1.19616 1.30689 0.95390 0.91044 1.24987 0.97471 0.96639 0.94455 1.69999 1.39697 1.41510 0.99031 0.86233 0.81010 0.80367 0.77943 1.19943 1.20788 1.19952 1.23217 1.02436 0.87895 0.95586 0.90495 0.90735 0.89086 0.76996 0.89071 0.93127 0.90245 0.93652 0.89600 0.89924 0.91711 0.89553 0.92727 0.77117 0.89462 0.89366 0.92101 0.92926 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.39 36.01 0.37 -0.15 16 2 C 0.04 0.33 7.33 -82.10 -0.60 -0.27 16 3 N -0.37 -4.06 12.07 33.42 0.40 -3.66 16 4 O 0.10 0.94 11.20 17.18 0.19 1.14 16 5 C -0.05 -0.38 12.04 29.74 0.36 -0.02 16 6 C -0.20 -1.54 4.62 -104.42 -0.48 -2.02 16 7 C 0.12 0.82 5.52 -4.98 -0.03 0.79 16 8 N -0.51 -4.12 5.39 -231.89 -1.25 -5.37 16 9 C 0.04 0.36 5.40 -1.90 -0.01 0.35 16 10 C -0.12 -1.45 5.85 -24.88 -0.15 -1.60 16 11 C 0.17 1.84 0.94 -130.47 -0.12 1.71 16 12 C -0.16 -1.86 8.15 37.16 0.30 -1.56 16 13 N -0.73 -8.87 5.15 -46.36 -0.24 -9.11 16 14 C 0.53 9.20 7.04 -10.99 -0.08 9.12 16 15 O -0.51 -10.57 12.75 5.56 0.07 -10.50 16 16 C -0.15 -2.97 6.16 36.01 0.22 -2.75 16 17 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 18 C -0.54 -15.03 9.50 30.94 0.29 -14.74 16 19 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 20 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -25.85 13.22 55.49 0.73 -25.11 16 22 Si 0.92 21.12 29.55 -169.99 -5.02 16.10 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 C 0.04 0.29 6.16 -2.75 -0.02 0.27 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.21 0.82 8.06 -52.49 -0.42 0.40 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.29 7.81 -51.93 -0.41 -0.11 16 33 H 0.08 0.81 7.90 -51.93 -0.41 0.40 16 34 H 0.05 0.42 8.02 -51.93 -0.42 0.00 16 35 H 0.09 1.25 6.81 -51.92 -0.35 0.89 16 36 H 0.08 0.98 7.85 -51.93 -0.41 0.57 16 37 H 0.06 0.66 8.11 -51.93 -0.42 0.24 16 38 H 0.09 1.32 6.04 -51.92 -0.31 1.01 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.39 3.71 8.09 -40.82 -0.33 3.38 16 41 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 42 H 0.09 1.58 8.14 -51.91 -0.42 1.16 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.05 0.35 6.89 -51.93 -0.36 -0.01 16 45 H 0.09 0.68 7.68 -51.93 -0.40 0.28 16 LS Contribution 382.16 15.07 5.76 5.76 Total: -1.00 -34.06 382.16 -8.33 -42.39 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -6.74 Total: 0.98 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -0.03 Total: -8.87 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: -0.35 Total: -43.26 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.26 Total: -9.36 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.06 -8.33 -42.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500184395.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.926 kcal (2) G-P(sol) polarization free energy of solvation -34.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds