Wall clock time and date at job start Sat Apr 11 2020 05:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30171 * 126.80483 * 2 1 4 4 O 1.20917 * 111.60422 * 180.02562 * 3 2 1 5 5 C 1.34040 * 111.57072 * 359.76489 * 4 3 2 6 6 C 1.35449 * 106.44363 * 0.37890 * 5 4 3 7 7 C 1.50696 * 128.00807 * 179.91192 * 6 5 4 8 8 N 1.46900 * 109.47238 * 259.67746 * 7 6 5 9 9 C 1.48534 * 111.00336 * 52.60164 * 8 7 6 10 10 C 1.54933 * 103.22918 * 159.72037 * 9 8 7 11 11 C 1.54591 * 102.92615 * 322.58639 * 10 9 8 12 12 C 1.52999 * 110.39407 * 140.91134 * 11 10 9 13 13 N 1.46497 * 110.31159 * 263.04347 * 11 10 9 14 14 C 1.34772 * 119.99605 * 295.71241 * 13 11 10 15 15 O 1.21277 * 120.00532 * 0.02562 * 14 13 11 16 16 C 1.50703 * 119.99805 * 179.97438 * 14 13 11 17 17 S 1.81003 * 109.47108 * 179.97438 * 16 14 13 18 18 C 1.76203 * 99.99857 * 180.02562 * 17 16 14 19 19 H 1.07994 * 120.00120 * 359.97438 * 18 17 16 20 20 C 1.38800 * 119.99787 * 180.02562 * 18 17 16 21 21 N 1.31626 * 120.00215 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99725 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46839 * 60.00147 * 22 20 18 24 24 H 1.48503 * 109.46947 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47394 * 299.99824 * 22 20 18 26 26 C 1.47906 * 111.00463 * 169.99874 * 8 7 6 27 27 H 1.08999 * 109.47058 * 269.97555 * 1 2 3 28 28 H 1.08997 * 109.46817 * 29.97380 * 1 2 3 29 29 H 1.08998 * 109.47488 * 149.97115 * 1 2 3 30 30 H 1.08000 * 126.78224 * 180.28393 * 5 4 3 31 31 H 1.08996 * 109.47462 * 139.67940 * 7 6 5 32 32 H 1.09001 * 109.47050 * 19.67535 * 7 6 5 33 33 H 1.09004 * 110.66939 * 278.16097 * 9 8 7 34 34 H 1.09002 * 110.66619 * 41.28493 * 9 8 7 35 35 H 1.09008 * 110.72472 * 204.22643 * 10 9 8 36 36 H 1.09006 * 110.87315 * 81.02185 * 10 9 8 37 37 H 1.09003 * 109.47309 * 304.24448 * 12 11 10 38 38 H 1.09008 * 109.46710 * 64.23734 * 12 11 10 39 39 H 1.08996 * 109.47239 * 184.23646 * 12 11 10 40 40 H 0.96997 * 120.00267 * 115.71330 * 13 11 10 41 41 H 1.08999 * 109.47204 * 300.00493 * 16 14 13 42 42 H 1.09003 * 109.46836 * 60.00182 * 16 14 13 43 43 H 0.96998 * 120.00381 * 180.02562 * 21 20 18 44 44 H 1.09003 * 109.91125 * 333.50977 * 26 8 7 45 45 H 1.08999 * 109.91852 * 94.80110 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7252 -0.0005 5 6 3.6024 -0.6069 0.0042 6 6 2.3539 -1.1321 -0.0007 7 6 1.9590 -2.5864 -0.0002 8 7 1.5973 -2.9960 -1.3638 9 6 2.6739 -2.6498 -2.3269 10 6 2.3865 -3.5824 -3.5302 11 6 1.9165 -4.8890 -2.8506 12 6 0.7657 -5.5164 -3.6399 13 7 3.0305 -5.8338 -2.7397 14 6 3.6035 -6.3335 -3.8524 15 8 3.1972 -6.0008 -4.9456 16 6 4.7500 -7.3050 -3.7384 17 16 5.2967 -7.7902 -5.3943 18 6 6.6034 -8.8948 -4.9736 19 1 6.8396 -9.0818 -3.9365 20 6 7.3300 -9.5237 -5.9752 21 7 7.0425 -9.2954 -7.2392 22 14 8.7158 -10.6942 -5.5292 23 1 8.1751 -11.8158 -4.7198 24 1 9.3291 -11.2309 -6.7705 25 1 9.7442 -9.9670 -4.7427 26 6 1.4351 -4.4636 -1.4510 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3634 -0.8897 -0.5143 30 1 4.5338 -1.1536 0.0092 31 1 1.1047 -2.7307 0.6611 32 1 2.7960 -3.1901 0.3505 33 1 2.6017 -1.6038 -2.6249 34 1 3.6543 -2.8626 -1.9007 35 1 3.2932 -3.7540 -4.1104 36 1 1.5987 -3.1707 -4.1612 37 1 -0.0403 -4.7903 -3.7464 38 1 1.1211 -5.8121 -4.6271 39 1 0.3967 -6.3937 -3.1088 40 1 3.3558 -6.0996 -1.8654 41 1 5.5756 -6.8319 -3.2068 42 1 4.4239 -8.1890 -3.1903 43 1 7.5499 -9.7352 -7.9391 44 1 2.0405 -4.9501 -0.6863 45 1 0.3858 -4.7294 -1.3225 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500184395.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:07 Heat of formation + Delta-G solvation = 8.717140 kcal Electronic energy + Delta-G solvation = -26915.261128 eV Core-core repulsion = 23061.482217 eV Total energy + Delta-G solvation = -3853.778911 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.88733 -41.46268 -39.49400 -36.63457 -35.15008 -34.57806 -33.47371 -32.30650 -30.88845 -29.91641 -29.55749 -28.02350 -27.64695 -25.77693 -23.32471 -22.37402 -22.21983 -21.61154 -20.51386 -19.80110 -18.56993 -18.37603 -17.83070 -17.33613 -16.87347 -16.79881 -16.30579 -16.16625 -15.85779 -15.48543 -14.96556 -14.71349 -14.53197 -14.47527 -14.16991 -14.12708 -13.85882 -13.73804 -13.44727 -13.28688 -13.15887 -13.08280 -12.86694 -12.76181 -12.62518 -12.55958 -12.39872 -11.99988 -11.97384 -11.79926 -11.72759 -11.12458 -10.80254 -10.67778 -10.45535 -10.25783 -10.05304 -9.42219 -8.64875 -8.34053 -6.11486 0.56911 1.23153 1.28264 1.43658 1.47596 1.57078 1.67850 2.25315 2.30398 2.40809 2.99988 3.05091 3.27166 3.34248 3.46261 3.65109 3.67315 3.93172 3.95963 4.03321 4.17419 4.27155 4.31191 4.35787 4.50157 4.53407 4.60325 4.61817 4.72053 4.72880 4.79572 4.83445 4.86763 4.90050 4.97978 5.02704 5.07070 5.17176 5.30893 5.38333 5.41905 5.54076 5.83916 5.98490 6.19869 6.57853 7.07306 7.32634 7.35386 8.74671 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020339 B = 0.002162 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.324343 B =12946.126249 C =13670.148686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.026 3.974 3 N -0.407 5.407 4 O 0.080 5.920 5 C -0.045 4.045 6 C -0.204 4.204 7 C 0.125 3.875 8 N -0.510 5.510 9 C 0.050 3.950 10 C -0.125 4.125 11 C 0.168 3.832 12 C -0.155 4.155 13 N -0.706 5.706 14 C 0.537 3.463 15 O -0.551 6.551 16 C -0.130 4.130 17 S -0.149 6.149 18 C -0.546 4.546 19 H 0.082 0.918 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.997 3.003 23 H -0.262 1.262 24 H -0.280 1.280 25 H -0.262 1.262 26 C 0.047 3.953 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.245 0.755 31 H 0.107 0.893 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.045 0.955 39 H 0.066 0.934 40 H 0.413 0.587 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.271 0.729 44 H 0.077 0.923 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.265 13.751 21.654 28.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.133 4.133 3 N -0.116 5.116 4 O 0.019 5.981 5 C -0.128 4.128 6 C -0.209 4.209 7 C -0.002 4.002 8 N -0.235 5.235 9 C -0.078 4.078 10 C -0.165 4.165 11 C 0.081 3.919 12 C -0.213 4.213 13 N -0.362 5.362 14 C 0.322 3.678 15 O -0.428 6.428 16 C -0.282 4.282 17 S 0.078 5.922 18 C -0.694 4.694 19 H 0.100 0.900 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.818 3.182 23 H -0.186 1.186 24 H -0.205 1.205 25 H -0.187 1.187 26 C -0.081 4.081 27 H 0.110 0.890 28 H 0.087 0.913 29 H 0.116 0.884 30 H 0.261 0.739 31 H 0.125 0.875 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.251 0.749 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.080 0.920 44 H 0.095 0.905 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.612 15.874 19.574 28.643 hybrid contribution 2.311 -2.253 1.280 3.472 sum -11.301 13.621 20.853 27.351 Atomic orbital electron populations 1.20257 0.84590 1.04373 1.04028 1.23989 1.00163 0.88314 1.00850 1.73866 0.90090 1.25628 1.22024 1.84790 1.21330 1.24177 1.67791 1.26504 1.01928 0.83038 1.01283 1.21280 0.92059 0.97685 1.09842 1.20592 1.01731 0.87440 0.90458 1.64943 1.40728 1.12355 1.05482 1.23066 0.93476 0.99063 0.92185 1.22787 1.01342 0.94776 0.97553 1.21152 0.86017 0.88201 0.96505 1.22143 0.97154 1.01406 1.00635 1.45999 1.35218 1.46515 1.08419 1.19937 0.82756 0.80524 0.84542 1.90676 1.63545 1.60156 1.28457 1.23390 0.99739 1.01636 1.03393 1.85568 1.42890 1.57811 1.05949 1.23170 1.19649 1.30621 0.95989 0.89976 1.26115 1.00358 0.98503 0.94211 1.70172 1.41252 1.42975 1.00359 0.85030 0.77342 0.77948 0.77849 1.18643 1.20528 1.18651 1.23178 1.03677 0.87753 0.93519 0.89036 0.91259 0.88410 0.73926 0.87525 0.91309 0.91217 0.92867 0.92939 0.90738 0.90223 0.93612 0.91532 0.74926 0.87566 0.87500 0.92042 0.90530 0.87189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.39 71.24 0.74 -0.17 16 2 C 0.03 0.44 7.33 43.58 0.32 0.76 16 3 N -0.41 -8.78 12.07 -49.57 -0.60 -9.38 16 4 O 0.08 1.50 11.20 71.64 0.80 2.30 16 5 C -0.05 -0.56 12.04 67.17 0.81 0.25 16 6 C -0.20 -2.69 4.62 -19.74 -0.09 -2.79 16 7 C 0.13 1.16 5.52 85.56 0.47 1.63 16 8 N -0.51 -6.56 5.39 -887.56 -4.78 -11.34 16 9 C 0.05 0.85 5.40 86.65 0.47 1.31 16 10 C -0.13 -2.88 5.85 31.80 0.19 -2.70 16 11 C 0.17 3.29 0.94 4.48 0.00 3.30 16 12 C -0.16 -3.48 8.15 71.98 0.59 -2.90 16 13 N -0.71 -15.51 5.15 -418.97 -2.16 -17.67 16 14 C 0.54 18.20 7.04 87.66 0.62 18.82 16 15 O -0.55 -23.64 12.75 -3.02 -0.04 -23.68 16 16 C -0.13 -4.88 6.16 71.24 0.44 -4.45 16 17 S -0.15 -8.09 20.57 -56.49 -1.16 -9.25 16 18 C -0.55 -30.66 9.50 67.95 0.65 -30.01 16 19 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 20 C 0.01 0.73 5.49 84.86 0.47 1.19 16 21 N -0.91 -55.55 13.22 21.65 0.29 -55.26 16 22 Si 1.00 42.97 29.55 68.60 2.03 44.99 16 23 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 24 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 25 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 26 C 0.05 0.54 6.16 86.45 0.53 1.08 16 27 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.24 1.09 8.06 -2.91 -0.02 1.07 16 31 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 0.43 7.81 -2.39 -0.02 0.41 16 33 H 0.07 1.34 7.90 -2.38 -0.02 1.32 16 34 H 0.05 0.82 8.02 -2.39 -0.02 0.80 16 35 H 0.05 1.57 6.81 -2.38 -0.02 1.55 16 36 H 0.07 1.80 7.85 -2.38 -0.02 1.78 16 37 H 0.08 1.52 8.11 -2.39 -0.02 1.50 16 38 H 0.04 1.43 6.04 -2.38 -0.01 1.42 16 39 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.41 6.12 8.09 -92.71 -0.75 5.37 16 41 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 42 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 43 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 44 H 0.08 0.58 6.89 -2.39 -0.02 0.57 16 45 H 0.11 1.06 7.68 -2.39 -0.02 1.04 16 Total: -1.00 -78.34 382.16 0.83 -77.52 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.26 Total: 16.43 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: 6.19 Total: -14.66 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -7.25 Total: -93.65 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: 0.76 Total: -21.38 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: -8.09 SS G_CDS: -1.16 Total: -9.25 kcal Total: -78.34 0.83 -77.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500184395.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.234 kcal (2) G-P(sol) polarization free energy of solvation -78.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds