Wall clock time and date at job start Sat Apr 11 2020 05:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34474 * 126.16686 * 2 1 4 4 C 1.30260 * 108.69785 * 179.97438 * 3 2 1 5 5 O 1.33963 * 108.76433 * 359.73600 * 4 3 2 6 6 C 1.34336 * 126.16045 * 179.97438 * 2 1 3 7 7 C 1.50694 * 126.44838 * 0.02562 * 6 2 1 8 8 N 1.46901 * 109.47128 * 275.13463 * 7 6 2 9 9 C 1.48537 * 110.99928 * 301.69648 * 8 7 6 10 10 C 1.54936 * 103.22352 * 200.28215 * 9 8 7 11 11 C 1.54591 * 102.92714 * 37.41136 * 10 9 8 12 12 C 1.52996 * 110.39231 * 219.08408 * 11 10 9 13 13 N 1.46500 * 110.30782 * 96.95523 * 11 10 9 14 14 C 1.34786 * 119.99584 * 64.28989 * 13 11 10 15 15 O 1.21273 * 120.00121 * 359.97438 * 14 13 11 16 16 C 1.50700 * 119.99641 * 179.97438 * 14 13 11 17 17 S 1.81001 * 109.46980 * 179.97438 * 16 14 13 18 18 C 1.76205 * 99.99907 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99819 * 0.02562 * 18 17 16 20 20 C 1.38799 * 119.99623 * 180.02562 * 18 17 16 21 21 N 1.31630 * 120.00269 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99376 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46521 * 179.97438 * 22 20 18 24 24 H 1.48495 * 109.47332 * 299.99588 * 22 20 18 25 25 H 1.48499 * 109.47463 * 60.00328 * 22 20 18 26 26 C 1.47900 * 110.99901 * 184.29822 * 8 7 6 27 27 H 1.09000 * 109.47490 * 274.94036 * 1 2 3 28 28 H 1.08998 * 109.47062 * 34.94018 * 1 2 3 29 29 H 1.08998 * 109.47444 * 154.93887 * 1 2 3 30 30 H 1.08006 * 125.61289 * 180.02562 * 4 3 2 31 31 H 1.08991 * 109.47228 * 155.13081 * 7 6 2 32 32 H 1.09002 * 109.46941 * 35.12744 * 7 6 2 33 33 H 1.09004 * 110.66442 * 318.71223 * 9 8 7 34 34 H 1.08996 * 110.66866 * 81.84287 * 9 8 7 35 35 H 1.08998 * 110.72093 * 279.04840 * 10 9 8 36 36 H 1.09002 * 110.72144 * 155.77398 * 10 9 8 37 37 H 1.09002 * 109.47344 * 297.15089 * 12 11 10 38 38 H 1.09004 * 109.47389 * 57.15444 * 12 11 10 39 39 H 1.09000 * 109.47134 * 177.15398 * 12 11 10 40 40 H 0.96997 * 120.00311 * 244.27930 * 13 11 10 41 41 H 1.09008 * 109.47232 * 59.99750 * 16 14 13 42 42 H 1.09005 * 109.47122 * 300.00063 * 16 14 13 43 43 H 0.97000 * 119.99716 * 180.02562 * 21 20 18 44 44 H 1.08995 * 109.91988 * 26.49049 * 26 8 7 45 45 H 1.08999 * 110.08562 * 265.28400 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3006 1.0856 0.0000 4 6 3.5431 0.6946 0.0006 5 8 3.5734 -0.6447 0.0068 6 6 2.2996 -1.0846 0.0005 7 6 1.8492 -2.5226 0.0006 8 7 1.5841 -2.9526 1.3800 9 6 2.7939 -2.7976 2.2277 10 6 2.5152 -3.7468 3.4201 11 6 1.8054 -4.9453 2.7495 12 6 0.6725 -5.4601 3.6396 13 7 2.7655 -6.0181 2.4784 14 6 3.3826 -6.6443 3.5001 15 8 3.1432 -6.3193 4.6437 16 6 4.3698 -7.7482 3.2212 17 16 5.0222 -8.3834 4.7855 18 6 6.1177 -9.6232 4.1791 19 1 6.2139 -9.7856 3.1157 20 6 6.8569 -10.3911 5.0682 21 7 6.7393 -10.1935 6.3642 22 14 8.0188 -11.7050 4.4253 23 1 8.6854 -12.3786 5.5686 24 1 7.2503 -12.7046 3.6409 25 1 9.0449 -11.0758 3.5554 26 6 1.2381 -4.3897 1.4300 27 1 -0.3634 0.0885 1.0238 28 1 -0.3633 0.8424 -0.5886 29 1 -0.3634 -0.9309 -0.4353 30 1 4.4066 1.3433 0.0011 31 1 2.6304 -3.1481 -0.4312 32 1 0.9387 -2.6182 -0.5911 33 1 3.6860 -3.1120 1.6861 34 1 2.8938 -1.7679 2.5709 35 1 1.8602 -3.2689 4.1486 36 1 3.4478 -4.0631 3.8875 37 1 1.0864 -5.8271 4.5788 38 1 -0.0269 -4.6491 3.8430 39 1 0.1507 -6.2708 3.1311 40 1 2.9571 -6.2778 1.5637 41 1 5.1895 -7.3586 2.6175 42 1 3.8716 -8.5534 2.6812 43 1 7.2562 -10.7299 6.9855 44 1 1.6881 -4.9096 0.5843 45 1 0.1556 -4.5151 1.4093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500185159.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:09 Heat of formation + Delta-G solvation = -32.003305 kcal Electronic energy + Delta-G solvation = -26899.741839 eV Core-core repulsion = 23044.197157 eV Total energy + Delta-G solvation = -3855.544682 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.30557 -41.48521 -39.47121 -36.21135 -35.94860 -34.59005 -33.69030 -32.25030 -30.91011 -29.96759 -29.14708 -27.65920 -27.09636 -25.59426 -23.26345 -23.00055 -22.12162 -21.45816 -20.53933 -19.81839 -18.24928 -17.84852 -17.76920 -17.30061 -16.88437 -16.84560 -16.31603 -16.18580 -15.92255 -15.38865 -15.34798 -14.77962 -14.64013 -14.49257 -14.16336 -14.08955 -13.89598 -13.83014 -13.60100 -13.17580 -13.11696 -13.04914 -12.87642 -12.79145 -12.64241 -12.55810 -12.45862 -12.04895 -11.96707 -11.89367 -11.74302 -11.48408 -11.13560 -10.70653 -10.27720 -10.11058 -9.78233 -9.46577 -8.66225 -8.35158 -6.12754 0.46292 1.26468 1.42803 1.46169 1.55691 1.65106 1.69599 1.83774 2.23850 2.28773 2.96619 2.98811 3.31398 3.32679 3.38592 3.56735 3.80728 3.87577 3.96175 3.99218 4.16023 4.19965 4.26662 4.31932 4.41827 4.47523 4.51189 4.70819 4.74758 4.79426 4.82218 4.84832 4.88178 4.91865 4.99397 5.04814 5.12639 5.19068 5.37704 5.40682 5.46841 5.47970 5.72664 5.82979 6.18750 6.54322 6.76204 7.06108 7.29482 8.73604 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021271 B = 0.002139 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.020947 B =13085.810598 C =13746.843357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.009 4.009 3 N -0.524 5.524 4 C 0.178 3.822 5 O -0.217 6.217 6 C -0.058 4.058 7 C 0.134 3.866 8 N -0.507 5.507 9 C 0.049 3.951 10 C -0.123 4.123 11 C 0.167 3.833 12 C -0.154 4.154 13 N -0.708 5.708 14 C 0.537 3.463 15 O -0.550 6.550 16 C -0.131 4.131 17 S -0.148 6.148 18 C -0.547 4.547 19 H 0.082 0.918 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.997 3.003 23 H -0.279 1.279 24 H -0.261 1.261 25 H -0.263 1.263 26 C 0.046 3.954 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.286 0.714 31 H 0.063 0.937 32 H 0.136 0.864 33 H 0.044 0.956 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.052 0.948 37 H 0.045 0.955 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.413 0.587 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.077 0.923 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.724 18.027 -19.320 29.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.129 4.129 3 N -0.254 5.254 4 C -0.048 4.048 5 O -0.104 6.104 6 C -0.111 4.111 7 C 0.006 3.994 8 N -0.232 5.232 9 C -0.079 4.079 10 C -0.162 4.162 11 C 0.081 3.919 12 C -0.212 4.212 13 N -0.363 5.363 14 C 0.323 3.677 15 O -0.427 6.427 16 C -0.282 4.282 17 S 0.079 5.921 18 C -0.695 4.695 19 H 0.100 0.900 20 C -0.192 4.192 21 N -0.547 5.547 22 Si 0.819 3.181 23 H -0.204 1.204 24 H -0.186 1.186 25 H -0.187 1.187 26 C -0.082 4.082 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.113 0.887 30 H 0.301 0.699 31 H 0.081 0.919 32 H 0.154 0.846 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.250 0.750 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.095 0.905 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.685 19.442 -17.093 29.282 hybrid contribution 2.423 -2.121 -1.622 3.606 sum -11.262 17.321 -18.715 27.877 Atomic orbital electron populations 1.20162 0.84960 1.03962 1.03211 1.21943 0.99179 0.87348 1.04448 1.70391 1.02565 1.32735 1.19717 1.28925 0.98214 0.79177 0.98443 1.84452 1.30628 1.25405 1.69870 1.23165 0.80584 0.98244 1.09092 1.20788 1.02199 0.85435 0.90943 1.65000 1.31822 1.17805 1.08560 1.23061 0.91687 0.99370 0.93769 1.22780 1.00629 0.95247 0.97561 1.21161 0.88510 0.86140 0.96090 1.22135 0.97022 1.02084 0.99958 1.46024 1.43889 1.37206 1.09195 1.19934 0.80590 0.81991 0.85211 1.90672 1.63720 1.65420 1.22886 1.23394 1.01084 1.00063 1.03680 1.85548 1.53639 1.45021 1.07849 1.23171 1.28551 1.21919 0.95872 0.90032 1.26120 0.98552 0.99794 0.94712 1.70174 1.41089 1.40648 1.02803 0.85024 0.77776 0.77434 0.77896 1.20434 1.18604 1.18733 1.23202 1.03392 0.86815 0.94760 0.90661 0.91010 0.88694 0.69916 0.91933 0.84637 0.93807 0.91310 0.90242 0.92900 0.93545 0.89927 0.91365 0.74982 0.87767 0.87405 0.92012 0.90490 0.86298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.27 71.24 0.73 -0.10 16 2 C -0.01 -0.17 7.11 41.26 0.29 0.12 16 3 N -0.52 -10.52 11.29 -304.06 -3.43 -13.96 16 4 C 0.18 2.67 13.23 130.48 1.73 4.39 16 5 O -0.22 -3.89 10.78 -3.75 -0.04 -3.94 16 6 C -0.06 -0.97 5.84 24.79 0.14 -0.83 16 7 C 0.13 1.58 5.11 85.55 0.44 2.01 16 8 N -0.51 -7.42 5.34 -887.59 -4.74 -12.17 16 9 C 0.05 0.97 5.73 86.65 0.50 1.47 16 10 C -0.12 -2.99 5.85 31.80 0.19 -2.80 16 11 C 0.17 3.43 0.94 4.48 0.00 3.43 16 12 C -0.15 -3.45 8.12 71.98 0.58 -2.87 16 13 N -0.71 -16.36 5.15 -418.95 -2.16 -18.52 16 14 C 0.54 18.70 7.04 87.66 0.62 19.31 16 15 O -0.55 -23.91 12.76 -3.01 -0.04 -23.94 16 16 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16 17 S -0.15 -8.09 20.57 -56.49 -1.16 -9.25 16 18 C -0.55 -31.02 9.50 67.95 0.65 -30.37 16 19 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 20 C 0.01 0.74 5.49 84.86 0.47 1.21 16 21 N -0.91 -55.80 13.22 21.65 0.29 -55.52 16 22 Si 1.00 43.32 29.55 68.60 2.03 45.35 16 23 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 24 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 25 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 26 C 0.05 0.57 6.16 86.45 0.53 1.10 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 29 H 0.09 0.75 7.14 -2.39 -0.02 0.73 16 30 H 0.29 1.32 8.06 -2.91 -0.02 1.30 16 31 H 0.06 0.68 7.97 -2.39 -0.02 0.66 16 32 H 0.14 0.89 7.27 -2.39 -0.02 0.87 16 33 H 0.04 0.91 8.02 -2.39 -0.02 0.89 16 34 H 0.07 1.51 7.96 -2.39 -0.02 1.49 16 35 H 0.08 1.96 7.86 -2.39 -0.02 1.94 16 36 H 0.05 1.65 6.81 -2.39 -0.02 1.64 16 37 H 0.05 1.45 6.07 -2.39 -0.01 1.44 16 38 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.41 6.69 8.09 -92.71 -0.75 5.94 16 41 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 42 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 43 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 44 H 0.08 0.66 6.98 -2.39 -0.02 0.65 16 45 H 0.12 1.10 7.68 -2.39 -0.02 1.08 16 Total: -1.00 -80.49 381.42 -1.70 -82.18 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.26 Total: 18.26 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 7.30 Total: -8.51 kcal Atomic # 7 Polarization: -90.11 SS G_CDS: -10.05 Total: -100.16 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.08 Total: -27.88 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: -8.09 SS G_CDS: -1.16 Total: -9.25 kcal Total: -80.49 -1.70 -82.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500185159.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.181 kcal (2) G-P(sol) polarization free energy of solvation -80.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds