Wall clock time and date at job start Sat Apr 11 2020 05:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.34481 * 126.16441 * 2 1 4 4 C 1.30254 * 108.69511 * 179.97438 * 3 2 1 5 5 O 1.33969 * 108.76439 * 359.73538 * 4 3 2 6 6 C 1.34329 * 126.16576 * 179.97438 * 2 1 3 7 7 C 1.50697 * 126.44126 * 0.02562 * 6 2 1 8 8 N 1.46904 * 109.47081 * 89.99898 * 7 6 2 9 9 C 1.48553 * 111.00004 * 69.87542 * 8 7 6 10 10 C 1.54381 * 104.59389 * 200.95997 * 9 8 7 11 11 C 1.54260 * 105.06213 * 23.85245 * 10 9 8 12 12 C 1.52997 * 110.32807 * 118.89636 * 11 10 9 13 13 N 1.46505 * 110.32460 * 241.00411 * 11 10 9 14 14 C 1.34776 * 119.99874 * 297.17333 * 13 11 10 15 15 O 1.21282 * 119.99694 * 359.97438 * 14 13 11 16 16 C 1.50702 * 119.99997 * 179.97438 * 14 13 11 17 17 S 1.81001 * 109.47040 * 179.97438 * 16 14 13 18 18 C 1.76194 * 99.99885 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00456 * 359.97438 * 18 17 16 20 20 C 1.38804 * 119.99784 * 180.02562 * 18 17 16 21 21 N 1.31632 * 119.99563 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00157 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47031 * 90.00112 * 22 20 18 24 24 H 1.48503 * 109.47048 * 210.00017 * 22 20 18 25 25 H 1.48498 * 109.46938 * 330.00191 * 22 20 18 26 26 C 1.48558 * 111.00099 * 314.45116 * 8 7 6 27 27 H 1.08998 * 109.47404 * 270.00663 * 1 2 3 28 28 H 1.09005 * 109.46786 * 30.00002 * 1 2 3 29 29 H 1.08992 * 109.47122 * 149.99732 * 1 2 3 30 30 H 1.07999 * 125.61363 * 179.97438 * 4 3 2 31 31 H 1.09005 * 109.47406 * 329.99617 * 7 6 2 32 32 H 1.09000 * 109.47143 * 209.99896 * 7 6 2 33 33 H 1.08996 * 110.41658 * 82.17727 * 9 8 7 34 34 H 1.09004 * 110.51228 * 319.78094 * 9 8 7 35 35 H 1.09002 * 110.32600 * 264.95521 * 10 9 8 36 36 H 1.09002 * 110.41100 * 142.78805 * 10 9 8 37 37 H 1.09002 * 109.47153 * 61.45300 * 12 11 10 38 38 H 1.09001 * 109.46832 * 301.45491 * 12 11 10 39 39 H 1.09004 * 109.47261 * 181.45472 * 12 11 10 40 40 H 0.97000 * 120.00378 * 117.16250 * 13 11 10 41 41 H 1.09000 * 109.46558 * 299.99542 * 16 14 13 42 42 H 1.08999 * 109.46703 * 59.99540 * 16 14 13 43 43 H 0.97006 * 119.99824 * 179.97438 * 21 20 18 44 44 H 1.08997 * 110.40899 * 40.26303 * 26 8 7 45 45 H 1.09006 * 110.41652 * 277.82320 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5431 0.6947 0.0006 5 8 3.5734 -0.6446 0.0068 6 6 2.2998 -1.0845 0.0005 7 6 1.8493 -2.5225 0.0006 8 7 1.7034 -2.9901 -1.3844 9 6 3.0277 -3.1195 -2.0449 10 6 2.7147 -3.0759 -3.5560 11 6 1.3673 -2.3327 -3.6650 12 6 1.5313 -1.0528 -4.4871 13 7 0.3552 -3.2004 -4.2724 14 6 0.5173 -3.6434 -5.5349 15 8 1.5008 -3.3232 -6.1683 16 6 -0.5236 -4.5364 -6.1596 17 16 -0.0232 -4.9571 -7.8474 18 6 -1.3797 -5.9757 -8.3238 19 1 -2.1848 -6.1628 -7.6287 20 6 -1.4131 -6.5385 -9.5922 21 7 -2.4263 -7.2998 -9.9478 22 14 -0.0203 -6.2155 -10.7943 23 1 1.0261 -7.2565 -10.6308 24 1 -0.5455 -6.2554 -12.1828 25 1 0.5658 -4.8779 -10.5250 26 6 0.9796 -1.9898 -2.2105 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8899 -0.5138 30 1 4.4066 1.3434 0.0003 31 1 0.8912 -2.6032 0.5142 32 1 2.5898 -3.1352 0.5148 33 1 3.4934 -4.0687 -1.7804 34 1 3.6760 -2.2884 -1.7670 35 1 2.6225 -4.0869 -3.9529 36 1 3.4925 -2.5297 -4.0898 37 1 1.8548 -1.3081 -5.4962 38 1 2.2778 -0.4124 -4.0173 39 1 0.5781 -0.5261 -4.5335 40 1 -0.4315 -3.4563 -3.7659 41 1 -0.6201 -5.4486 -5.5708 42 1 -1.4812 -4.0164 -6.1838 43 1 -2.4498 -7.6929 -10.8344 44 1 1.3056 -0.9808 -1.9580 45 1 -0.0969 -2.0885 -2.0707 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500185160.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:12 Heat of formation + Delta-G solvation = -0.107597 kcal Electronic energy + Delta-G solvation = -27541.602678 eV Core-core repulsion = 23687.441098 eV Total energy + Delta-G solvation = -3854.161580 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.87490 -40.44506 -38.48660 -35.66062 -35.09258 -32.75463 -32.42574 -31.47705 -29.80214 -28.80278 -28.49542 -26.66563 -25.60152 -24.89214 -22.75286 -22.09103 -21.28638 -20.69322 -19.42808 -17.92722 -17.63645 -17.39230 -16.64064 -16.32207 -15.75045 -15.53159 -15.11087 -15.01066 -14.94804 -14.63253 -14.08641 -13.71480 -13.62431 -13.43242 -13.37682 -13.08076 -13.07314 -12.79302 -12.63410 -12.50098 -12.19365 -12.00199 -11.87807 -11.50399 -11.40531 -11.25535 -11.13507 -11.00770 -10.94825 -10.87090 -10.57948 -9.84507 -9.35237 -9.22708 -9.05565 -8.99875 -8.89710 -8.48442 -6.89959 -6.27945 -3.99178 0.97232 2.21842 2.32472 2.78213 3.00613 3.31110 3.34764 3.50885 3.53260 3.67191 3.72772 4.09501 4.27796 4.33642 4.34220 4.43028 4.71578 4.76646 4.84645 4.91349 5.03951 5.09865 5.11206 5.14334 5.17412 5.22632 5.26714 5.32336 5.44965 5.48117 5.52546 5.60694 5.64435 5.72489 5.79740 5.85617 5.91025 6.04354 6.10031 6.18766 6.36206 6.40721 6.69904 7.27478 7.69147 7.95247 8.43041 8.55194 9.18340 10.81346 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028992 B = 0.002299 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.554258 B =12173.996254 C =12342.209952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.001 4.001 3 N -0.485 5.485 4 C 0.171 3.829 5 O -0.200 6.200 6 C -0.082 4.082 7 C 0.125 3.875 8 N -0.491 5.491 9 C 0.027 3.973 10 C -0.122 4.122 11 C 0.179 3.821 12 C -0.159 4.159 13 N -0.722 5.722 14 C 0.533 3.467 15 O -0.516 6.516 16 C -0.124 4.124 17 S -0.142 6.142 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.881 5.881 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.235 1.235 26 C 0.018 3.982 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.249 0.751 31 H 0.113 0.887 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.049 0.951 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.400 0.600 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.270 0.730 44 H 0.072 0.928 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.406 14.357 24.556 29.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 N -0.214 5.214 4 C -0.056 4.056 5 O -0.086 6.086 6 C -0.137 4.137 7 C -0.003 4.003 8 N -0.212 5.212 9 C -0.101 4.101 10 C -0.161 4.161 11 C 0.092 3.908 12 C -0.218 4.218 13 N -0.377 5.377 14 C 0.319 3.681 15 O -0.391 6.391 16 C -0.275 4.275 17 S 0.085 5.915 18 C -0.668 4.668 19 H 0.106 0.894 20 C -0.114 4.114 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 C -0.110 4.110 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.264 0.736 31 H 0.131 0.869 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.234 0.766 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.516 14.835 23.390 29.627 hybrid contribution -0.311 -0.265 0.418 0.584 sum 10.205 14.570 23.807 29.719 Atomic orbital electron populations 1.20333 0.86384 1.03921 1.03217 1.21607 0.98079 0.87562 1.04975 1.70391 1.01390 1.31675 1.17934 1.28080 0.97603 0.79539 1.00374 1.84499 1.30200 1.24559 1.69311 1.24293 0.81020 0.99513 1.08838 1.21123 1.02525 0.84022 0.92678 1.65814 1.14985 1.39947 1.00478 1.23280 0.90413 1.01848 0.94524 1.22702 0.96551 1.02484 0.94405 1.20853 0.88525 0.90398 0.91065 1.22211 1.01729 0.95281 1.02536 1.46087 1.24931 1.51873 1.14790 1.20220 0.87125 0.79935 0.80786 1.90660 1.30227 1.56626 1.61594 1.23285 1.00569 1.01391 1.02212 1.84753 1.33691 1.65062 1.08022 1.22325 1.07208 1.33748 1.03544 0.89411 1.24720 0.95854 0.93519 0.97273 1.69943 1.29996 1.31093 1.20715 0.86730 0.82579 0.81692 0.80809 1.19245 1.19994 1.15932 1.23775 1.00075 0.95568 0.91611 0.90487 0.90290 0.90238 0.73570 0.86883 0.88541 0.89488 0.93228 0.89830 0.90390 0.89481 0.92554 0.92427 0.76553 0.88572 0.88607 0.91969 0.90990 0.89027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 9.59 36.01 0.35 -0.18 16 2 C 0.00 -0.01 5.60 -82.81 -0.46 -0.48 16 3 N -0.48 -4.69 11.29 -11.17 -0.13 -4.81 16 4 C 0.17 1.24 13.23 52.09 0.69 1.93 16 5 O -0.20 -1.69 9.92 5.38 0.05 -1.64 16 6 C -0.08 -0.66 4.81 -35.69 -0.17 -0.84 16 7 C 0.13 0.84 5.76 -4.98 -0.03 0.81 16 8 N -0.49 -4.13 5.65 -231.41 -1.31 -5.43 16 9 C 0.03 0.25 6.32 -2.19 -0.01 0.24 16 10 C -0.12 -1.44 5.53 -25.35 -0.14 -1.58 16 11 C 0.18 2.02 1.01 -130.44 -0.13 1.89 16 12 C -0.16 -1.93 8.14 37.16 0.30 -1.62 16 13 N -0.72 -9.04 5.09 -46.33 -0.24 -9.27 16 14 C 0.53 9.11 7.03 -10.98 -0.08 9.03 16 15 O -0.52 -10.46 13.16 5.56 0.07 -10.38 16 16 C -0.12 -2.36 6.16 36.01 0.22 -2.14 16 17 S -0.14 -3.56 18.55 -107.50 -1.99 -5.55 16 18 C -0.52 -14.97 10.04 30.94 0.31 -14.66 16 19 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 20 C 0.09 2.78 5.50 -17.43 -0.10 2.68 16 21 N -0.88 -26.61 13.97 55.49 0.78 -25.83 16 22 Si 0.86 21.80 27.74 -169.99 -4.71 17.08 16 23 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 24 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.24 -5.97 6.74 56.52 0.38 -5.58 16 26 C 0.02 0.15 4.09 -2.18 -0.01 0.14 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.42 5.44 -51.93 -0.28 0.14 16 30 H 0.25 0.65 8.06 -52.49 -0.42 0.22 16 31 H 0.11 0.57 7.80 -51.93 -0.40 0.16 16 32 H 0.10 0.57 8.08 -51.93 -0.42 0.15 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.47 6.48 -51.93 -0.34 0.13 16 35 H 0.08 1.17 7.41 -51.93 -0.38 0.79 16 36 H 0.08 0.95 7.71 -51.93 -0.40 0.55 16 37 H 0.09 1.31 6.21 -51.93 -0.32 0.99 16 38 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.40 4.03 8.28 -40.82 -0.34 3.69 16 41 H 0.10 1.73 8.14 -51.92 -0.42 1.30 16 42 H 0.10 1.71 8.14 -51.92 -0.42 1.28 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.07 0.66 4.29 -51.93 -0.22 0.44 16 45 H 0.09 0.68 6.86 -51.93 -0.36 0.32 16 LS Contribution 369.06 15.07 5.56 5.56 Total: -1.00 -35.17 369.06 -7.60 -42.78 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -6.43 Total: 2.27 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: 0.74 Total: -4.77 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: -0.89 Total: -45.35 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.13 Total: -12.02 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.08 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.17 -7.60 -42.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500185160.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.669 kcal (2) G-P(sol) polarization free energy of solvation -35.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds