Wall clock time and date at job start Sat Apr 11 2020 05:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.34481 * 126.16441 * 2 1 4 4 C 1.30254 * 108.69511 * 179.97438 * 3 2 1 5 5 O 1.33969 * 108.76439 * 359.73538 * 4 3 2 6 6 C 1.34329 * 126.16576 * 179.97438 * 2 1 3 7 7 C 1.50697 * 126.44126 * 0.02562 * 6 2 1 8 8 N 1.46904 * 109.47081 * 89.99898 * 7 6 2 9 9 C 1.48553 * 111.00004 * 69.87542 * 8 7 6 10 10 C 1.54381 * 104.59389 * 200.95997 * 9 8 7 11 11 C 1.54260 * 105.06213 * 23.85245 * 10 9 8 12 12 C 1.52997 * 110.32807 * 118.89636 * 11 10 9 13 13 N 1.46505 * 110.32460 * 241.00411 * 11 10 9 14 14 C 1.34776 * 119.99874 * 297.17333 * 13 11 10 15 15 O 1.21282 * 119.99694 * 359.97438 * 14 13 11 16 16 C 1.50702 * 119.99997 * 179.97438 * 14 13 11 17 17 S 1.81001 * 109.47040 * 179.97438 * 16 14 13 18 18 C 1.76194 * 99.99885 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00456 * 359.97438 * 18 17 16 20 20 C 1.38804 * 119.99784 * 180.02562 * 18 17 16 21 21 N 1.31632 * 119.99563 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00157 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47031 * 90.00112 * 22 20 18 24 24 H 1.48503 * 109.47048 * 210.00017 * 22 20 18 25 25 H 1.48498 * 109.46938 * 330.00191 * 22 20 18 26 26 C 1.48558 * 111.00099 * 314.45116 * 8 7 6 27 27 H 1.08998 * 109.47404 * 270.00663 * 1 2 3 28 28 H 1.09005 * 109.46786 * 30.00002 * 1 2 3 29 29 H 1.08992 * 109.47122 * 149.99732 * 1 2 3 30 30 H 1.07999 * 125.61363 * 179.97438 * 4 3 2 31 31 H 1.09005 * 109.47406 * 329.99617 * 7 6 2 32 32 H 1.09000 * 109.47143 * 209.99896 * 7 6 2 33 33 H 1.08996 * 110.41658 * 82.17727 * 9 8 7 34 34 H 1.09004 * 110.51228 * 319.78094 * 9 8 7 35 35 H 1.09002 * 110.32600 * 264.95521 * 10 9 8 36 36 H 1.09002 * 110.41100 * 142.78805 * 10 9 8 37 37 H 1.09002 * 109.47153 * 61.45300 * 12 11 10 38 38 H 1.09001 * 109.46832 * 301.45491 * 12 11 10 39 39 H 1.09004 * 109.47261 * 181.45472 * 12 11 10 40 40 H 0.97000 * 120.00378 * 117.16250 * 13 11 10 41 41 H 1.09000 * 109.46558 * 299.99542 * 16 14 13 42 42 H 1.08999 * 109.46703 * 59.99540 * 16 14 13 43 43 H 0.97006 * 119.99824 * 179.97438 * 21 20 18 44 44 H 1.08997 * 110.40899 * 40.26303 * 26 8 7 45 45 H 1.09006 * 110.41652 * 277.82320 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5431 0.6947 0.0006 5 8 3.5734 -0.6446 0.0068 6 6 2.2998 -1.0845 0.0005 7 6 1.8493 -2.5225 0.0006 8 7 1.7034 -2.9901 -1.3844 9 6 3.0277 -3.1195 -2.0449 10 6 2.7147 -3.0759 -3.5560 11 6 1.3673 -2.3327 -3.6650 12 6 1.5313 -1.0528 -4.4871 13 7 0.3552 -3.2004 -4.2724 14 6 0.5173 -3.6434 -5.5349 15 8 1.5008 -3.3232 -6.1683 16 6 -0.5236 -4.5364 -6.1596 17 16 -0.0232 -4.9571 -7.8474 18 6 -1.3797 -5.9757 -8.3238 19 1 -2.1848 -6.1628 -7.6287 20 6 -1.4131 -6.5385 -9.5922 21 7 -2.4263 -7.2998 -9.9478 22 14 -0.0203 -6.2155 -10.7943 23 1 1.0261 -7.2565 -10.6308 24 1 -0.5455 -6.2554 -12.1828 25 1 0.5658 -4.8779 -10.5250 26 6 0.9796 -1.9898 -2.2105 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8899 -0.5138 30 1 4.4066 1.3434 0.0003 31 1 0.8912 -2.6032 0.5142 32 1 2.5898 -3.1352 0.5148 33 1 3.4934 -4.0687 -1.7804 34 1 3.6760 -2.2884 -1.7670 35 1 2.6225 -4.0869 -3.9529 36 1 3.4925 -2.5297 -4.0898 37 1 1.8548 -1.3081 -5.4962 38 1 2.2778 -0.4124 -4.0173 39 1 0.5781 -0.5261 -4.5335 40 1 -0.4315 -3.4563 -3.7659 41 1 -0.6201 -5.4486 -5.5708 42 1 -1.4812 -4.0164 -6.1838 43 1 -2.4498 -7.6929 -10.8344 44 1 1.3056 -0.9808 -1.9580 45 1 -0.0969 -2.0885 -2.0707 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500185160.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:11 Heat of formation + Delta-G solvation = -29.084731 kcal Electronic energy + Delta-G solvation = -27542.859221 eV Core-core repulsion = 23687.441098 eV Total energy + Delta-G solvation = -3855.418123 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.43440 -41.47121 -39.56988 -36.30215 -36.00115 -34.66203 -33.68144 -32.36370 -30.68059 -29.92495 -29.30945 -27.83625 -27.31970 -25.61414 -23.38966 -22.83374 -22.36183 -21.32840 -20.54816 -19.86221 -18.22344 -18.13338 -17.69623 -17.55168 -17.08412 -16.50541 -16.38469 -16.20211 -15.89967 -15.56410 -15.33836 -15.01215 -14.76063 -14.38744 -14.18953 -14.16869 -14.10035 -13.77040 -13.58767 -13.33972 -13.21452 -13.16780 -13.04041 -12.99616 -12.62215 -12.50277 -12.31573 -12.07710 -11.93492 -11.91613 -11.84752 -11.49992 -11.16358 -10.74026 -10.51322 -10.14073 -9.80697 -9.63182 -8.97147 -8.50728 -6.20604 0.42672 1.00652 1.31561 1.47319 1.56859 1.63204 1.65721 1.83582 2.23373 2.27480 2.73638 2.87515 2.88074 3.29712 3.30497 3.61334 3.70814 3.87615 3.90537 3.97545 4.11077 4.15527 4.26582 4.31648 4.48014 4.51038 4.53692 4.62547 4.65149 4.67633 4.71713 4.73685 4.76574 4.84505 4.93294 5.01623 5.13545 5.15182 5.21146 5.41749 5.52938 5.66520 5.71758 5.76123 6.12644 6.55593 6.72573 6.94628 7.27477 8.61743 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028992 B = 0.002299 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.554258 B =12173.996254 C =12342.209952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.014 4.014 3 N -0.522 5.522 4 C 0.176 3.824 5 O -0.211 6.211 6 C -0.090 4.090 7 C 0.127 3.873 8 N -0.491 5.491 9 C 0.036 3.964 10 C -0.123 4.123 11 C 0.175 3.825 12 C -0.154 4.154 13 N -0.699 5.699 14 C 0.538 3.462 15 O -0.551 6.551 16 C -0.111 4.111 17 S -0.173 6.173 18 C -0.528 4.528 19 H 0.062 0.938 20 C 0.044 3.956 21 N -0.918 5.918 22 Si 0.915 3.085 23 H -0.263 1.263 24 H -0.260 1.260 25 H -0.236 1.236 26 C 0.028 3.972 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.284 0.716 31 H 0.134 0.866 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.415 0.585 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.276 0.724 44 H 0.072 0.928 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.913 15.248 26.455 32.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.134 4.134 3 N -0.251 5.251 4 C -0.050 4.050 5 O -0.097 6.097 6 C -0.144 4.144 7 C -0.001 4.001 8 N -0.213 5.213 9 C -0.092 4.092 10 C -0.162 4.162 11 C 0.088 3.912 12 C -0.212 4.212 13 N -0.354 5.354 14 C 0.323 3.677 15 O -0.429 6.429 16 C -0.262 4.262 17 S 0.053 5.947 18 C -0.676 4.676 19 H 0.080 0.920 20 C -0.161 4.161 21 N -0.556 5.556 22 Si 0.737 3.263 23 H -0.188 1.188 24 H -0.184 1.184 25 H -0.160 1.160 26 C -0.100 4.100 27 H 0.105 0.895 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.299 0.701 31 H 0.152 0.848 32 H 0.123 0.877 33 H 0.111 0.889 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.253 0.747 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 10.991 15.729 25.337 31.783 hybrid contribution -0.471 -0.467 -0.007 0.663 sum 10.520 15.262 25.330 31.388 Atomic orbital electron populations 1.20403 0.85217 1.04189 1.03991 1.21969 0.99025 0.87535 1.04866 1.70406 1.02546 1.32622 1.19546 1.28953 0.98173 0.79487 0.98364 1.84506 1.30537 1.25143 1.69499 1.24472 0.80865 0.99919 1.09192 1.21268 1.03949 0.83373 0.91542 1.65838 1.14181 1.39976 1.01279 1.23175 0.91110 1.02250 0.92671 1.22630 0.96634 1.00784 0.96125 1.21007 0.87999 0.89598 0.92561 1.22125 1.02321 0.95875 1.00893 1.45867 1.25597 1.50741 1.13162 1.19853 0.86086 0.79745 0.81972 1.90663 1.31402 1.58008 1.62831 1.23275 1.01836 1.02784 0.98306 1.84666 1.32572 1.64356 1.13058 1.22478 1.07618 1.34175 1.03295 0.92020 1.25573 0.98106 0.93386 0.99028 1.70022 1.31733 1.32197 1.21620 0.85860 0.79767 0.81463 0.79228 1.18761 1.18433 1.16033 1.23704 1.01284 0.95608 0.89354 0.89470 0.90931 0.88978 0.70079 0.84792 0.87673 0.88908 0.93105 0.92271 0.91483 0.92679 0.91467 0.91703 0.74712 0.87204 0.87065 0.91411 0.90966 0.86985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 9.59 71.24 0.68 -0.16 16 2 C -0.01 -0.21 5.60 41.26 0.23 0.02 16 3 N -0.52 -9.24 11.29 -304.06 -3.43 -12.67 16 4 C 0.18 2.22 13.23 130.48 1.73 3.95 16 5 O -0.21 -3.13 9.92 -3.66 -0.04 -3.17 16 6 C -0.09 -1.25 4.81 24.79 0.12 -1.13 16 7 C 0.13 1.31 5.76 85.56 0.49 1.81 16 8 N -0.49 -6.89 5.65 -886.05 -5.01 -11.90 16 9 C 0.04 0.61 6.32 86.45 0.55 1.15 16 10 C -0.12 -2.80 5.53 31.49 0.17 -2.63 16 11 C 0.17 3.66 1.01 4.50 0.00 3.67 16 12 C -0.15 -3.56 8.14 71.98 0.59 -2.98 16 13 N -0.70 -16.20 5.09 -418.87 -2.13 -18.33 16 14 C 0.54 17.87 7.03 87.66 0.62 18.49 16 15 O -0.55 -22.35 13.16 -3.04 -0.04 -22.39 16 16 C -0.11 -4.12 6.16 71.24 0.44 -3.68 16 17 S -0.17 -8.68 18.55 -56.49 -1.05 -9.73 16 18 C -0.53 -30.73 10.04 67.96 0.68 -30.04 16 19 H 0.06 3.79 8.03 -2.91 -0.02 3.76 16 20 C 0.04 2.61 5.50 84.86 0.47 3.07 16 21 N -0.92 -56.02 13.97 21.65 0.30 -55.72 16 22 Si 0.91 45.14 27.74 68.60 1.90 47.04 16 23 H -0.26 -12.67 7.11 99.48 0.71 -11.96 16 24 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 25 H -0.24 -11.63 6.74 99.48 0.67 -10.96 16 26 C 0.03 0.41 4.09 86.45 0.35 0.76 16 27 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.09 0.68 5.44 -2.39 -0.01 0.66 16 30 H 0.28 0.77 8.06 -2.91 -0.02 0.74 16 31 H 0.13 0.84 7.80 -2.38 -0.02 0.82 16 32 H 0.10 0.94 8.08 -2.39 -0.02 0.92 16 33 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.05 0.87 6.48 -2.38 -0.02 0.85 16 35 H 0.06 1.65 7.41 -2.39 -0.02 1.63 16 36 H 0.07 1.65 7.71 -2.39 -0.02 1.63 16 37 H 0.05 1.67 6.21 -2.39 -0.01 1.65 16 38 H 0.07 1.39 8.12 -2.39 -0.02 1.37 16 39 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 40 H 0.42 7.14 8.28 -92.71 -0.77 6.38 16 41 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 42 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 43 H 0.28 15.61 8.31 -92.70 -0.77 14.84 16 44 H 0.07 1.13 4.29 -2.39 -0.01 1.12 16 45 H 0.11 1.21 6.86 -2.38 -0.02 1.19 16 Total: -1.00 -77.20 369.06 -2.15 -79.35 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.22 Total: 15.22 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: 7.12 Total: -7.70 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -10.27 Total: -98.62 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.08 Total: -25.56 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.90 Total: 47.04 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.05 Total: -9.73 kcal Total: -77.20 -2.15 -79.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500185160.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.268 kcal (2) G-P(sol) polarization free energy of solvation -77.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds