Wall clock time and date at job start Sat Apr 11 2020 05:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33644 * 122.74847 * 2 1 4 4 S 1.76194 * 107.92377 * 179.75627 * 3 2 1 5 5 C 1.70972 * 90.28457 * 0.28635 * 4 3 2 6 6 C 1.50697 * 124.91903 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.47224 * 269.69317 * 6 5 4 8 8 C 1.50709 * 109.47204 * 179.97438 * 7 6 5 9 9 O 1.21273 * 119.99638 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99710 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99646 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47140 * 179.97438 * 11 10 8 13 13 H 1.09007 * 109.70509 * 59.24585 * 12 11 10 14 14 C 1.53291 * 109.68383 * 179.78296 * 12 11 10 15 15 O 1.42965 * 109.22477 * 172.03022 * 14 12 11 16 16 C 1.42963 * 114.16394 * 297.41956 * 15 14 12 17 17 C 1.53294 * 109.22194 * 62.57983 * 16 15 14 18 18 N 1.47155 * 108.41530 * 307.67725 * 17 16 15 19 19 C 1.36934 * 120.97993 * 230.53798 * 18 17 16 20 20 H 1.08008 * 119.99710 * 149.01342 * 19 18 17 21 21 C 1.38807 * 120.00709 * 329.01603 * 19 18 17 22 22 N 1.31623 * 119.99833 * 349.05742 * 21 19 18 23 23 Si 1.86797 * 120.00495 * 169.06083 * 21 19 18 24 24 H 1.48497 * 109.47115 * 59.99834 * 23 21 19 25 25 H 1.48502 * 109.47410 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46944 * 300.00047 * 23 21 19 27 27 N 1.29024 * 110.16515 * 359.70745 * 5 4 3 28 28 H 1.09004 * 109.46853 * 269.99760 * 1 2 3 29 29 H 1.09000 * 109.46736 * 29.99848 * 1 2 3 30 30 H 1.08998 * 109.46768 * 150.00103 * 1 2 3 31 31 H 1.07995 * 126.03720 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.47700 * 149.69730 * 6 5 4 33 33 H 1.09003 * 109.47398 * 29.69495 * 6 5 4 34 34 H 1.09002 * 109.46880 * 59.99939 * 7 6 5 35 35 H 1.08992 * 109.47466 * 300.00049 * 7 6 5 36 36 H 0.97001 * 119.99981 * 359.97438 * 10 8 7 37 37 H 1.09002 * 109.47187 * 59.99819 * 11 10 8 38 38 H 1.09003 * 109.47538 * 299.99785 * 11 10 8 39 39 H 1.08999 * 109.51188 * 52.10395 * 14 12 11 40 40 H 1.09003 * 109.51475 * 291.95389 * 14 12 11 41 41 H 1.09004 * 109.50988 * 302.65508 * 16 15 14 42 42 H 1.08995 * 109.55307 * 182.53059 * 16 15 14 43 43 H 1.08992 * 109.68346 * 67.42292 * 17 16 15 44 44 H 1.09002 * 109.68093 * 187.93661 * 17 16 15 45 45 H 0.96997 * 120.00091 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9332 0.6732 0.0071 5 6 3.5040 -0.9817 0.0009 6 6 4.4836 -2.1270 0.0022 7 6 4.8156 -2.5158 -1.4399 8 6 5.7957 -3.6606 -1.4386 9 8 6.1893 -4.1205 -0.3878 10 7 6.2345 -4.1733 -2.6052 11 6 7.1868 -5.2865 -2.6039 12 6 7.5189 -5.6752 -4.0460 13 1 7.9474 -4.8195 -4.5679 14 6 8.5195 -6.8365 -4.0503 15 8 8.6810 -7.3138 -5.3883 16 6 7.4874 -7.8457 -5.9679 17 6 6.4339 -6.7361 -6.0618 18 7 6.2944 -6.1141 -4.7355 19 6 5.0627 -5.9492 -4.1604 20 1 4.9601 -5.9799 -3.0856 21 6 3.9460 -5.7426 -4.9585 22 7 4.0920 -5.4905 -6.2420 23 14 2.2359 -5.8223 -4.2110 24 1 2.1121 -4.7933 -3.1475 25 1 1.2222 -5.5677 -5.2658 26 1 2.0141 -7.1687 -3.6251 27 7 2.2200 -1.1082 0.0005 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.8392 2.1308 -0.0004 32 1 4.0433 -2.9812 0.5165 33 1 5.3959 -1.8242 0.5161 34 1 5.2559 -1.6615 -1.9543 35 1 3.9034 -2.8185 -1.9538 36 1 5.9193 -3.8056 -3.4457 37 1 6.7463 -6.1409 -2.0900 38 1 8.0990 -4.9839 -2.0896 39 1 8.1448 -7.6423 -3.4191 40 1 9.4802 -6.4909 -3.6686 41 1 7.1089 -8.6552 -5.3437 42 1 7.7048 -8.2267 -6.9657 43 1 6.7531 -5.9873 -6.7867 44 1 5.4789 -7.1616 -6.3700 45 1 3.3116 -5.3458 -6.7997 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501810595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:16 Heat of formation + Delta-G solvation = -17.747955 kcal Electronic energy + Delta-G solvation = -27473.983655 eV Core-core repulsion = 23619.057132 eV Total energy + Delta-G solvation = -3854.926524 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.02208 -39.34300 -38.33900 -35.41533 -34.13864 -33.57357 -31.68465 -31.02322 -30.40129 -27.81749 -27.30337 -26.56899 -24.76755 -23.46669 -22.25797 -21.53067 -19.89368 -19.79037 -19.51944 -17.76543 -17.10002 -16.29686 -15.99046 -15.78469 -15.28862 -15.11302 -15.02449 -14.71166 -14.56615 -14.13626 -13.90576 -13.65637 -13.52220 -13.17952 -12.98181 -12.85299 -12.68502 -12.59457 -12.32754 -11.90039 -11.81104 -11.55842 -11.43489 -11.12481 -10.96939 -10.86862 -10.76609 -10.43368 -10.27701 -10.05959 -9.70946 -9.68710 -9.53906 -9.44715 -9.00160 -8.77019 -8.68523 -8.29907 -6.75452 -5.92539 -3.42348 0.59148 1.26352 1.64222 2.67327 3.12898 3.30270 3.36053 3.39637 3.68137 4.05448 4.33479 4.51762 4.80004 4.97744 5.05458 5.09120 5.13061 5.16175 5.25264 5.40795 5.41670 5.52742 5.57838 5.59983 5.71857 5.77317 5.84667 5.99506 6.00744 6.06574 6.08298 6.14309 6.16381 6.21925 6.31720 6.50638 6.73821 7.05387 7.08005 7.47093 7.68229 7.68851 7.84960 8.17066 8.27197 8.77947 9.03674 9.64166 10.23290 11.13900 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014103 B = 0.003133 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.985066 B = 8936.095198 C =10313.958467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.069 3.931 3 C -0.271 4.271 4 S 0.113 5.887 5 C 0.066 3.934 6 C -0.027 4.027 7 C -0.135 4.135 8 C 0.512 3.488 9 O -0.564 6.564 10 N -0.694 5.694 11 C 0.136 3.864 12 C 0.125 3.875 13 H 0.041 0.959 14 C 0.056 3.944 15 O -0.393 6.393 16 C 0.035 3.965 17 C 0.144 3.856 18 N -0.591 5.591 19 C -0.256 4.256 20 H 0.073 0.927 21 C 0.011 3.989 22 N -0.900 5.900 23 Si 0.895 3.105 24 H -0.278 1.278 25 H -0.290 1.290 26 H -0.283 1.283 27 N -0.471 5.471 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.175 0.825 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.416 0.584 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.083 0.917 41 H 0.040 0.960 42 H 0.079 0.921 43 H 0.029 0.971 44 H 0.092 0.908 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.040 10.624 8.495 13.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.063 4.063 3 C -0.410 4.410 4 S 0.369 5.631 5 C -0.212 4.212 6 C -0.069 4.069 7 C -0.177 4.177 8 C 0.298 3.702 9 O -0.445 6.445 10 N -0.344 5.344 11 C 0.011 3.989 12 C 0.018 3.982 13 H 0.059 0.941 14 C -0.023 4.023 15 O -0.311 6.311 16 C -0.043 4.043 17 C 0.018 3.982 18 N -0.317 5.317 19 C -0.386 4.386 20 H 0.091 0.909 21 C -0.189 4.189 22 N -0.544 5.544 23 Si 0.725 3.275 24 H -0.204 1.204 25 H -0.216 1.216 26 H -0.209 1.209 27 N -0.185 5.185 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.192 0.808 32 H 0.121 0.879 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.120 0.880 36 H 0.253 0.747 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.101 0.899 41 H 0.059 0.941 42 H 0.098 0.902 43 H 0.047 0.953 44 H 0.110 0.890 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.083 10.373 8.994 13.772 hybrid contribution -2.434 0.181 -0.144 2.445 sum -1.352 10.555 8.850 13.840 Atomic orbital electron populations 1.20369 0.87197 1.03468 1.02862 1.20356 0.98332 0.86541 1.01037 1.26762 0.95172 1.03822 1.15236 1.83964 1.07417 1.03454 1.68304 1.27146 0.94011 0.98208 1.01883 1.20015 0.95557 0.93831 0.97452 1.21606 1.00683 0.98138 0.97274 1.20279 0.81795 0.84104 0.84016 1.90643 1.59573 1.62801 1.31464 1.45991 1.45061 1.34476 1.08916 1.21162 0.91534 0.89618 0.96541 1.21444 0.89752 0.95199 0.91850 0.94132 1.22865 0.98850 0.96381 0.84218 1.87801 1.33888 1.80790 1.28646 1.23352 0.86883 0.97151 0.96933 1.21413 0.97462 0.92354 0.86936 1.44100 1.00788 1.68781 1.18025 1.19179 0.83424 1.44155 0.91811 0.90927 1.25130 0.98382 0.99387 0.96006 1.69970 1.29037 1.50657 1.04703 0.86484 0.84226 0.78527 0.78307 1.20387 1.21572 1.20926 1.66156 1.04605 1.31514 1.16256 0.90685 0.90777 0.90408 0.80800 0.87871 0.88805 0.88996 0.87985 0.74663 0.91476 0.92315 0.93502 0.89920 0.94124 0.90242 0.95292 0.88960 0.93389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.31 36.01 0.37 -0.38 16 2 C 0.07 0.86 6.74 -84.22 -0.57 0.29 16 3 C -0.27 -2.84 11.13 29.12 0.32 -2.52 16 4 S 0.11 1.22 23.18 -107.50 -2.49 -1.27 16 5 C 0.07 0.89 6.64 -13.46 -0.09 0.80 16 6 C -0.03 -0.37 5.09 -27.88 -0.14 -0.51 16 7 C -0.14 -1.98 5.68 -27.88 -0.16 -2.14 16 8 C 0.51 8.97 7.83 -10.98 -0.09 8.89 16 9 O -0.56 -11.20 15.98 5.56 0.09 -11.11 16 10 N -0.69 -12.53 3.80 -60.29 -0.23 -12.76 16 11 C 0.14 2.44 4.44 -4.04 -0.02 2.43 16 12 C 0.12 2.38 3.20 -67.38 -0.22 2.17 16 13 H 0.04 0.81 8.14 -51.92 -0.42 0.38 16 14 C 0.06 0.97 6.29 37.31 0.23 1.21 16 15 O -0.39 -7.56 10.74 -35.23 -0.38 -7.94 16 16 C 0.03 0.66 6.99 37.31 0.26 0.92 16 17 C 0.14 3.23 5.38 -3.53 -0.02 3.21 16 18 N -0.59 -13.40 3.04 -164.25 -0.50 -13.90 16 19 C -0.26 -6.25 7.11 -15.06 -0.11 -6.36 16 20 H 0.07 1.80 5.81 -52.48 -0.31 1.50 16 21 C 0.01 0.27 5.05 -17.43 -0.09 0.18 16 22 N -0.90 -24.01 11.13 55.49 0.62 -23.39 16 23 Si 0.90 20.82 29.57 -169.99 -5.03 15.79 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 N -0.47 -7.02 10.53 -8.06 -0.08 -7.10 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.10 1.54 8.10 -51.93 -0.42 1.12 16 33 H 0.09 1.15 8.10 -51.93 -0.42 0.73 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 36 H 0.42 7.87 7.38 -40.82 -0.30 7.56 16 37 H 0.07 1.32 7.53 -51.93 -0.39 0.93 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.09 2.29 6.32 -51.93 -0.33 1.96 16 45 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 378.45 15.07 5.70 5.70 Total: -1.00 -29.83 378.45 -9.40 -39.23 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -6.80 Total: 8.57 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: -0.30 Total: 8.19 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: -0.19 Total: -57.16 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.29 Total: -19.05 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.49 Total: -1.27 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.83 -9.40 -39.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501810595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.479 kcal (2) G-P(sol) polarization free energy of solvation -29.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds