Wall clock time and date at job start Sat Apr 11 2020 05:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33644 * 122.74847 * 2 1 4 4 S 1.76194 * 107.92377 * 179.75627 * 3 2 1 5 5 C 1.70972 * 90.28457 * 0.28635 * 4 3 2 6 6 C 1.50697 * 124.91903 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.47224 * 269.69317 * 6 5 4 8 8 C 1.50709 * 109.47204 * 179.97438 * 7 6 5 9 9 O 1.21273 * 119.99638 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99710 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99646 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47140 * 179.97438 * 11 10 8 13 13 H 1.09007 * 109.70509 * 59.24585 * 12 11 10 14 14 C 1.53291 * 109.68383 * 179.78296 * 12 11 10 15 15 O 1.42965 * 109.22477 * 172.03022 * 14 12 11 16 16 C 1.42963 * 114.16394 * 297.41956 * 15 14 12 17 17 C 1.53294 * 109.22194 * 62.57983 * 16 15 14 18 18 N 1.47155 * 108.41530 * 307.67725 * 17 16 15 19 19 C 1.36934 * 120.97993 * 230.53798 * 18 17 16 20 20 H 1.08008 * 119.99710 * 149.01342 * 19 18 17 21 21 C 1.38807 * 120.00709 * 329.01603 * 19 18 17 22 22 N 1.31623 * 119.99833 * 349.05742 * 21 19 18 23 23 Si 1.86797 * 120.00495 * 169.06083 * 21 19 18 24 24 H 1.48497 * 109.47115 * 59.99834 * 23 21 19 25 25 H 1.48502 * 109.47410 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46944 * 300.00047 * 23 21 19 27 27 N 1.29024 * 110.16515 * 359.70745 * 5 4 3 28 28 H 1.09004 * 109.46853 * 269.99760 * 1 2 3 29 29 H 1.09000 * 109.46736 * 29.99848 * 1 2 3 30 30 H 1.08998 * 109.46768 * 150.00103 * 1 2 3 31 31 H 1.07995 * 126.03720 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.47700 * 149.69730 * 6 5 4 33 33 H 1.09003 * 109.47398 * 29.69495 * 6 5 4 34 34 H 1.09002 * 109.46880 * 59.99939 * 7 6 5 35 35 H 1.08992 * 109.47466 * 300.00049 * 7 6 5 36 36 H 0.97001 * 119.99981 * 359.97438 * 10 8 7 37 37 H 1.09002 * 109.47187 * 59.99819 * 11 10 8 38 38 H 1.09003 * 109.47538 * 299.99785 * 11 10 8 39 39 H 1.08999 * 109.51188 * 52.10395 * 14 12 11 40 40 H 1.09003 * 109.51475 * 291.95389 * 14 12 11 41 41 H 1.09004 * 109.50988 * 302.65508 * 16 15 14 42 42 H 1.08995 * 109.55307 * 182.53059 * 16 15 14 43 43 H 1.08992 * 109.68346 * 67.42292 * 17 16 15 44 44 H 1.09002 * 109.68093 * 187.93661 * 17 16 15 45 45 H 0.96997 * 120.00091 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9332 0.6732 0.0071 5 6 3.5040 -0.9817 0.0009 6 6 4.4836 -2.1270 0.0022 7 6 4.8156 -2.5158 -1.4399 8 6 5.7957 -3.6606 -1.4386 9 8 6.1893 -4.1205 -0.3878 10 7 6.2345 -4.1733 -2.6052 11 6 7.1868 -5.2865 -2.6039 12 6 7.5189 -5.6752 -4.0460 13 1 7.9474 -4.8195 -4.5679 14 6 8.5195 -6.8365 -4.0503 15 8 8.6810 -7.3138 -5.3883 16 6 7.4874 -7.8457 -5.9679 17 6 6.4339 -6.7361 -6.0618 18 7 6.2944 -6.1141 -4.7355 19 6 5.0627 -5.9492 -4.1604 20 1 4.9601 -5.9799 -3.0856 21 6 3.9460 -5.7426 -4.9585 22 7 4.0920 -5.4905 -6.2420 23 14 2.2359 -5.8223 -4.2110 24 1 2.1121 -4.7933 -3.1475 25 1 1.2222 -5.5677 -5.2658 26 1 2.0141 -7.1687 -3.6251 27 7 2.2200 -1.1082 0.0005 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.8392 2.1308 -0.0004 32 1 4.0433 -2.9812 0.5165 33 1 5.3959 -1.8242 0.5161 34 1 5.2559 -1.6615 -1.9543 35 1 3.9034 -2.8185 -1.9538 36 1 5.9193 -3.8056 -3.4457 37 1 6.7463 -6.1409 -2.0900 38 1 8.0990 -4.9839 -2.0896 39 1 8.1448 -7.6423 -3.4191 40 1 9.4802 -6.4909 -3.6686 41 1 7.1089 -8.6552 -5.3437 42 1 7.7048 -8.2267 -6.9657 43 1 6.7531 -5.9873 -6.7867 44 1 5.4789 -7.1616 -6.3700 45 1 3.3116 -5.3458 -6.7997 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501810595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:15 Heat of formation + Delta-G solvation = -37.091383 kcal Electronic energy + Delta-G solvation = -27474.822449 eV Core-core repulsion = 23619.057132 eV Total energy + Delta-G solvation = -3855.765318 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.06679 -40.70648 -39.87300 -36.98070 -35.38459 -35.12390 -33.29862 -32.30007 -31.84243 -29.05052 -28.60005 -27.86941 -26.10829 -25.22290 -23.52710 -22.88034 -21.45657 -21.05136 -20.69540 -18.85643 -18.58931 -17.74897 -17.60690 -17.26143 -16.55180 -16.46035 -16.25212 -16.13393 -15.82207 -15.77241 -15.38468 -14.99139 -14.80622 -14.63055 -14.39639 -14.01784 -13.81490 -13.64155 -13.43333 -13.28097 -13.09690 -12.92330 -12.84023 -12.73019 -12.48949 -12.25315 -12.21128 -12.14605 -11.99426 -11.84674 -11.30546 -10.97774 -10.66372 -10.59813 -10.55531 -10.39394 -9.83759 -9.64755 -8.62139 -7.87949 -5.38041 -0.30751 0.39421 0.76625 1.40685 1.45304 1.48665 1.71288 1.74732 2.34763 2.45193 3.03160 3.10353 3.28690 3.45247 3.71958 3.96066 4.04175 4.05447 4.15554 4.24569 4.26943 4.35245 4.39654 4.48074 4.50721 4.62170 4.65787 4.67856 4.72720 4.76255 4.78383 4.80924 4.95371 5.01210 5.01940 5.12831 5.31696 5.33287 5.58345 5.65094 5.69266 6.30042 6.37342 6.70180 6.79563 7.10665 7.33002 7.76677 8.32667 9.16315 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014103 B = 0.003133 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.985066 B = 8936.095198 C =10313.958467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.039 3.961 3 C -0.260 4.260 4 S 0.160 5.840 5 C 0.036 3.964 6 C -0.020 4.020 7 C -0.127 4.127 8 C 0.513 3.487 9 O -0.587 6.587 10 N -0.697 5.697 11 C 0.141 3.859 12 C 0.126 3.874 13 H 0.039 0.961 14 C 0.057 3.943 15 O -0.397 6.397 16 C 0.046 3.954 17 C 0.149 3.851 18 N -0.605 5.605 19 C -0.240 4.240 20 H 0.069 0.931 21 C -0.028 4.028 22 N -0.925 5.925 23 Si 0.939 3.061 24 H -0.278 1.278 25 H -0.295 1.295 26 H -0.288 1.288 27 N -0.507 5.507 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.061 0.939 31 H 0.208 0.792 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.117 0.883 35 H 0.085 0.915 36 H 0.411 0.589 37 H 0.048 0.952 38 H 0.083 0.917 39 H 0.048 0.952 40 H 0.119 0.881 41 H 0.042 0.958 42 H 0.104 0.896 43 H 0.007 0.993 44 H 0.065 0.935 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.985 12.111 9.339 15.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.092 4.092 3 C -0.398 4.398 4 S 0.415 5.585 5 C -0.242 4.242 6 C -0.061 4.061 7 C -0.168 4.168 8 C 0.300 3.700 9 O -0.469 6.469 10 N -0.347 5.347 11 C 0.017 3.983 12 C 0.019 3.981 13 H 0.057 0.943 14 C -0.022 4.022 15 O -0.316 6.316 16 C -0.032 4.032 17 C 0.023 3.977 18 N -0.331 5.331 19 C -0.370 4.370 20 H 0.086 0.914 21 C -0.225 4.225 22 N -0.571 5.571 23 Si 0.769 3.231 24 H -0.204 1.204 25 H -0.222 1.222 26 H -0.215 1.215 27 N -0.223 5.223 28 H 0.103 0.897 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.224 0.776 32 H 0.100 0.900 33 H 0.125 0.875 34 H 0.136 0.864 35 H 0.103 0.897 36 H 0.248 0.752 37 H 0.067 0.933 38 H 0.101 0.899 39 H 0.066 0.934 40 H 0.137 0.863 41 H 0.061 0.939 42 H 0.122 0.878 43 H 0.025 0.975 44 H 0.083 0.917 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.050 11.852 9.855 15.550 hybrid contribution -2.675 -0.218 -0.358 2.708 sum -0.625 11.634 9.497 15.031 Atomic orbital electron populations 1.20440 0.85668 1.03867 1.03683 1.20790 0.99609 0.86550 1.02257 1.27224 0.94979 1.04829 1.12796 1.83731 1.07212 1.00607 1.66907 1.27019 0.93811 0.99736 1.03594 1.19879 0.96146 0.93634 0.96454 1.21554 0.99103 0.97827 0.98305 1.20702 0.81654 0.84344 0.83326 1.90627 1.60521 1.63656 1.32127 1.46042 1.45243 1.34508 1.08923 1.21120 0.92343 0.89088 0.95730 1.21582 0.88632 0.95928 0.91916 0.94317 1.23001 1.00053 0.95529 0.83576 1.87805 1.33530 1.80748 1.29511 1.23208 0.85896 0.95575 0.98473 1.21239 0.97235 0.92755 0.86459 1.44308 1.01491 1.69198 1.18146 1.19215 0.84243 1.42027 0.91483 0.91394 1.25531 1.00350 1.00375 0.96271 1.70078 1.28970 1.52611 1.05439 0.85788 0.81969 0.77938 0.77399 1.20380 1.22159 1.21508 1.66149 1.05607 1.33562 1.17020 0.89650 0.88346 0.92006 0.77558 0.90036 0.87541 0.86443 0.89653 0.75172 0.93321 0.89891 0.93360 0.86323 0.93932 0.87793 0.97474 0.91675 0.94085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.36 10.31 71.24 0.73 -0.63 16 2 C 0.04 0.92 6.74 41.52 0.28 1.20 16 3 C -0.26 -4.75 11.13 66.78 0.74 -4.01 16 4 S 0.16 3.09 23.18 -56.49 -1.31 1.78 16 5 C 0.04 0.94 6.64 88.52 0.59 1.52 16 6 C -0.02 -0.54 5.09 29.85 0.15 -0.39 16 7 C -0.13 -3.66 5.68 29.85 0.17 -3.49 16 8 C 0.51 17.76 7.83 87.66 0.69 18.45 16 9 O -0.59 -23.08 15.98 -3.01 -0.05 -23.13 16 10 N -0.70 -24.86 3.80 -463.06 -1.76 -26.62 16 11 C 0.14 4.93 4.44 86.38 0.38 5.31 16 12 C 0.13 4.64 3.20 44.95 0.14 4.79 16 13 H 0.04 1.48 8.14 -2.38 -0.02 1.47 16 14 C 0.06 1.84 6.29 72.08 0.45 2.29 16 15 O -0.40 -14.38 10.74 -148.98 -1.60 -15.98 16 16 C 0.05 1.70 6.99 72.08 0.50 2.21 16 17 C 0.15 6.72 5.38 86.35 0.46 7.18 16 18 N -0.61 -27.37 3.04 -673.56 -2.04 -29.41 16 19 C -0.24 -11.75 7.11 84.03 0.60 -11.16 16 20 H 0.07 3.40 5.81 -2.91 -0.02 3.38 16 21 C -0.03 -1.47 5.05 84.86 0.43 -1.04 16 22 N -0.93 -50.43 11.13 21.65 0.24 -50.19 16 23 Si 0.94 43.63 29.57 68.60 2.03 45.66 16 24 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 25 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 26 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 27 N -0.51 -15.05 10.53 -179.41 -1.89 -16.94 16 28 H 0.08 1.27 8.14 -2.39 -0.02 1.26 16 29 H 0.10 1.19 8.12 -2.39 -0.02 1.17 16 30 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.21 2.26 8.06 -2.91 -0.02 2.24 16 32 H 0.08 2.53 8.10 -2.39 -0.02 2.51 16 33 H 0.11 2.54 8.10 -2.39 -0.02 2.52 16 34 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.41 15.51 7.38 -92.71 -0.68 14.82 16 37 H 0.05 1.89 7.53 -2.39 -0.02 1.87 16 38 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 41 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 43 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 44 H 0.06 3.30 6.32 -2.39 -0.02 3.28 16 45 H 0.25 13.50 8.31 -92.71 -0.77 12.73 16 Total: -1.00 -64.78 378.45 0.27 -64.52 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: 0.32 Total: 28.07 kcal Atomic # 6 Polarization: 15.91 SS G_CDS: 6.33 Total: 22.24 kcal Atomic # 7 Polarization: -117.70 SS G_CDS: -5.45 Total: -123.15 kcal Atomic # 8 Polarization: -37.46 SS G_CDS: -1.65 Total: -39.11 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -1.31 Total: 1.78 kcal Total: -64.78 0.27 -64.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501810595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.425 kcal (2) G-P(sol) polarization free energy of solvation -64.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds