Wall clock time and date at job start Sat Apr 11 2020 05:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35444 * 126.77682 * 2 1 4 4 C 1.41378 * 103.98827 * 179.97438 * 3 2 1 5 5 C 1.50696 * 126.80403 * 180.02562 * 4 3 2 6 6 N 1.46899 * 109.47309 * 94.99800 * 5 4 3 7 7 C 1.46847 * 111.00030 * 293.95381 * 6 5 4 8 8 C 1.53034 * 109.52326 * 174.16117 * 7 6 5 9 9 C 1.53117 * 109.28010 * 59.17583 * 8 7 6 10 10 C 1.53119 * 109.16519 * 302.34814 * 9 8 7 11 11 H 1.09004 * 109.50124 * 297.67309 * 10 9 8 12 12 N 1.46498 * 109.50817 * 177.59204 * 10 9 8 13 13 C 1.34777 * 119.99828 * 84.72111 * 12 10 9 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 10 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 10 16 16 S 1.81000 * 109.47389 * 180.02562 * 15 13 12 17 17 C 1.76198 * 99.99715 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00516 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99710 * 179.97438 * 17 16 15 20 20 N 1.31634 * 120.00163 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00011 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46850 * 90.00589 * 21 19 17 23 23 H 1.48498 * 109.47329 * 210.00016 * 21 19 17 24 24 H 1.48499 * 109.47220 * 330.01003 * 21 19 17 25 25 C 1.46855 * 111.00079 * 169.74292 * 6 5 4 26 26 N 1.30173 * 106.39383 * 0.26310 * 4 3 2 27 27 O 1.20927 * 111.60186 * 359.53703 * 26 4 3 28 28 H 1.08996 * 109.47161 * 89.99542 * 1 2 3 29 29 H 1.08996 * 109.46691 * 209.99983 * 1 2 3 30 30 H 1.09001 * 109.46958 * 329.99228 * 1 2 3 31 31 H 1.08011 * 128.00748 * 0.02562 * 3 2 1 32 32 H 1.08997 * 109.47396 * 334.99448 * 5 4 3 33 33 H 1.08998 * 109.47006 * 214.99858 * 5 4 3 34 34 H 1.08991 * 109.45838 * 54.14472 * 7 6 5 35 35 H 1.09002 * 109.45812 * 294.17252 * 7 6 5 36 36 H 1.08999 * 109.50313 * 299.23815 * 8 7 6 37 37 H 1.08993 * 109.53842 * 179.13986 * 8 7 6 38 38 H 1.08999 * 109.52842 * 182.43981 * 9 8 7 39 39 H 1.09004 * 109.57425 * 62.28323 * 9 8 7 40 40 H 0.97001 * 120.00384 * 265.00558 * 12 10 9 41 41 H 1.08998 * 109.46954 * 300.00581 * 15 13 12 42 42 H 1.09002 * 109.46946 * 59.99717 * 15 13 12 43 43 H 0.96991 * 119.99795 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.46027 * 65.82420 * 25 6 5 45 45 H 1.09006 * 109.46257 * 305.85734 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5373 0.0006 5 6 4.9210 1.3000 0.0014 6 7 5.4037 1.4436 1.3814 7 6 4.5004 2.2919 2.1693 8 6 4.9526 2.3008 3.6313 9 6 6.3855 2.8341 3.7140 10 6 7.2973 1.9620 2.8464 11 1 7.3004 0.9426 3.2323 12 7 8.6597 2.4998 2.8744 13 6 9.4970 2.1622 3.8751 14 8 9.1242 1.4092 4.7498 15 6 10.8965 2.7202 3.9074 16 16 11.7662 2.0847 5.3619 17 6 13.3279 2.8736 5.1536 18 1 13.4962 3.5231 4.3072 19 6 14.3414 2.6613 6.0778 20 7 14.1362 1.8701 7.1097 21 14 15.9973 3.4971 5.8566 22 1 15.9837 4.8126 6.5456 23 1 17.0641 2.6442 6.4394 24 1 16.2603 3.6992 4.4092 25 6 6.7771 1.9630 1.4072 26 7 3.4764 -0.7563 -0.0048 27 8 2.3095 -1.0736 0.0005 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5140 31 1 2.0345 2.1271 0.0004 32 1 4.7633 2.2872 -0.4329 33 1 5.6608 0.7580 -0.5877 34 1 3.4857 1.8992 2.1054 35 1 4.5218 3.3084 1.7763 36 1 4.9183 1.2866 4.0290 37 1 4.2913 2.9425 4.2134 38 1 6.7272 2.8017 4.7486 39 1 6.4139 3.8623 3.3532 40 1 8.9580 3.1020 2.1749 41 1 11.4289 2.4183 3.0054 42 1 10.8528 3.8083 3.9563 43 1 14.8446 1.7215 7.7553 44 1 6.7878 2.9809 1.0178 45 1 7.4159 1.3314 0.7897 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566618445.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:21 Heat of formation + Delta-G solvation = 22.585573 kcal Electronic energy + Delta-G solvation = -26179.229747 eV Core-core repulsion = 22326.052216 eV Total energy + Delta-G solvation = -3853.177531 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.25291 -39.98174 -38.53126 -35.58722 -34.15061 -33.66882 -32.55906 -32.41742 -30.50280 -28.42041 -28.14077 -27.49231 -25.47376 -23.76411 -23.21283 -23.08144 -20.48297 -20.26240 -19.87053 -17.99737 -17.84439 -17.53063 -16.62385 -16.36212 -15.61351 -15.45471 -14.99537 -14.90134 -14.79467 -14.41868 -14.29191 -14.09337 -13.84948 -13.75212 -13.67043 -13.16174 -13.06234 -12.98154 -12.74898 -12.53876 -12.28579 -11.97999 -11.56102 -11.37689 -11.13193 -11.05721 -11.01630 -10.94792 -10.77679 -10.69650 -10.47100 -9.80422 -9.67649 -9.36150 -9.06004 -8.88352 -8.73076 -8.22009 -6.48548 -6.20560 -3.90996 1.12812 1.80977 2.75322 2.97598 3.11529 3.22920 3.26639 3.30944 3.52000 3.79079 3.86924 4.08242 4.21434 4.50066 4.60636 4.65544 4.69187 4.76851 4.82004 4.88069 4.92719 5.05132 5.07672 5.12448 5.14530 5.16852 5.24643 5.30469 5.40115 5.42170 5.46852 5.60429 5.65753 5.66275 5.74966 5.90375 5.93157 6.14591 6.15791 6.21937 6.52310 6.62611 6.77300 7.60493 7.72867 7.98144 8.36186 8.64287 9.24674 10.86867 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.036499 B = 0.001723 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.950433 B =16244.027954 C =16328.059639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.034 4.034 3 C -0.233 4.233 4 C 0.027 3.973 5 C 0.135 3.865 6 N -0.529 5.529 7 C 0.053 3.947 8 C -0.114 4.114 9 C -0.132 4.132 10 C 0.152 3.848 11 H 0.097 0.903 12 N -0.736 5.736 13 C 0.534 3.466 14 O -0.514 6.514 15 C -0.153 4.153 16 S -0.059 6.059 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.054 3.946 26 N -0.345 5.345 27 O 0.101 5.899 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.168 0.832 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.036 0.964 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.396 0.604 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.041 0.959 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.340 2.720 -17.895 33.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 C -0.255 4.255 4 C -0.133 4.133 5 C 0.006 3.994 6 N -0.255 5.255 7 C -0.074 4.074 8 C -0.152 4.152 9 C -0.171 4.171 10 C 0.046 3.954 11 H 0.115 0.885 12 N -0.390 5.390 13 C 0.320 3.680 14 O -0.388 6.388 15 C -0.304 4.304 16 S 0.167 5.833 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.075 4.075 26 N -0.047 5.047 27 O 0.033 5.967 28 H 0.106 0.894 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.186 0.814 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.054 0.946 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.230 0.770 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.059 0.941 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -28.002 -0.135 -16.059 32.280 hybrid contribution 1.307 3.362 -1.849 4.053 sum -26.695 3.227 -17.908 32.307 Atomic orbital electron populations 1.20340 0.84066 1.04737 1.04070 1.24506 0.96419 0.86266 1.02551 1.22404 0.91459 1.00886 1.10784 1.23287 0.96632 0.90083 1.03252 1.20274 0.91094 0.97588 0.90413 1.61692 1.01936 1.51087 1.10739 1.22207 0.96517 0.94522 0.94169 1.21531 0.96115 1.02487 0.95059 1.22004 0.94602 0.98870 1.01644 1.20783 0.81082 0.99533 0.93999 0.88474 1.45996 1.12936 1.51415 1.28606 1.20291 0.86417 0.80447 0.80824 1.90708 1.76832 1.34623 1.36624 1.23535 0.95224 1.04152 1.07489 1.85412 1.09905 1.62715 1.25250 1.22873 0.98401 1.33549 1.13612 0.90948 1.24992 0.98927 0.95174 0.94480 1.70018 1.33668 1.34740 1.11834 0.86170 0.81737 0.79123 0.78473 1.20288 1.20742 1.19716 1.22274 0.89218 0.98725 0.97241 1.73894 0.96509 1.16353 1.17985 1.84867 1.11391 1.33203 1.67260 0.89425 0.89734 0.89079 0.81416 0.92274 0.88744 0.90599 0.94591 0.90746 0.91084 0.90605 0.92138 0.77043 0.89240 0.89280 0.92185 0.94088 0.89783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.19 10.45 36.01 0.38 0.18 16 2 C -0.03 -0.23 7.49 -35.30 -0.26 -0.49 16 3 C -0.23 -1.62 9.97 -39.39 -0.39 -2.02 16 4 C 0.03 0.26 6.02 -82.10 -0.49 -0.24 16 5 C 0.13 1.12 5.56 -4.98 -0.03 1.09 16 6 N -0.53 -5.12 4.65 -236.12 -1.10 -6.22 16 7 C 0.05 0.46 5.30 -3.84 -0.02 0.44 16 8 C -0.11 -1.11 6.09 -26.65 -0.16 -1.28 16 9 C -0.13 -1.53 5.57 -26.61 -0.15 -1.68 16 10 C 0.15 1.88 2.61 -67.85 -0.18 1.70 16 11 H 0.10 1.51 7.59 -51.93 -0.39 1.12 16 12 N -0.74 -9.85 5.08 -53.73 -0.27 -10.12 16 13 C 0.53 10.01 7.81 -10.98 -0.09 9.93 16 14 O -0.51 -11.80 15.53 5.55 0.09 -11.71 16 15 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 16 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 17 C -0.54 -15.37 9.50 30.94 0.29 -15.07 16 18 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.32 13.22 55.49 0.73 -25.59 16 21 Si 0.92 21.51 29.55 -169.99 -5.02 16.48 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 C 0.05 0.51 4.93 -3.83 -0.02 0.49 16 26 N -0.34 -4.01 12.07 33.42 0.40 -3.61 16 27 O 0.10 1.00 11.20 17.19 0.19 1.19 16 28 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.17 0.74 8.06 -52.48 -0.42 0.32 16 32 H 0.06 0.38 8.12 -51.93 -0.42 -0.05 16 33 H 0.09 0.79 7.98 -51.93 -0.41 0.37 16 34 H 0.08 0.64 6.26 -51.93 -0.33 0.31 16 35 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.40 4.05 8.60 -40.82 -0.35 3.70 16 41 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 42 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.08 0.79 8.01 -51.93 -0.42 0.37 16 LS Contribution 386.44 15.07 5.82 5.82 Total: -1.00 -36.19 386.44 -9.30 -45.49 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.94 Total: -0.09 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -1.00 Total: -7.81 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: -0.23 Total: -45.54 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.28 Total: -10.52 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.19 -9.30 -45.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566618445.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.074 kcal (2) G-P(sol) polarization free energy of solvation -36.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds