Wall clock time and date at job start Sat Apr 11 2020 05:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34033 * 126.78124 * 2 1 4 4 N 1.20919 * 111.57133 * 180.02562 * 3 2 1 5 5 C 1.30182 * 111.60403 * 359.74295 * 4 3 2 6 6 C 1.35451 * 126.77225 * 180.02562 * 2 1 3 7 7 C 1.50699 * 128.00929 * 359.95708 * 6 2 1 8 8 N 1.46897 * 109.47209 * 284.70357 * 7 6 2 9 9 C 1.48559 * 111.00452 * 284.48611 * 8 7 6 10 10 C 1.54380 * 104.59597 * 200.95911 * 9 8 7 11 11 C 1.54268 * 105.06009 * 23.85207 * 10 9 8 12 12 H 1.08997 * 110.31988 * 240.99991 * 11 10 9 13 13 N 1.46501 * 110.32274 * 118.89664 * 11 10 9 14 14 C 1.34775 * 119.99760 * 86.45831 * 13 11 10 15 15 O 1.21284 * 120.00572 * 359.97438 * 14 13 11 16 16 C 1.50699 * 119.99724 * 179.97438 * 14 13 11 17 17 S 1.80996 * 109.47227 * 179.97438 * 16 14 13 18 18 C 1.76202 * 100.00324 * 179.97438 * 17 16 14 19 19 H 1.08005 * 119.99943 * 0.02562 * 18 17 16 20 20 C 1.38794 * 120.00411 * 180.27284 * 18 17 16 21 21 N 1.31624 * 120.00466 * 179.72668 * 20 18 17 22 22 Si 1.86810 * 119.99790 * 359.72421 * 20 18 17 23 23 H 1.48497 * 109.46734 * 90.00027 * 22 20 18 24 24 H 1.48496 * 109.46882 * 210.00022 * 22 20 18 25 25 H 1.48498 * 109.47033 * 330.00032 * 22 20 18 26 26 C 1.48565 * 111.00166 * 169.06349 * 8 7 6 27 27 H 1.08998 * 110.40840 * 40.26237 * 26 8 7 28 28 C 1.53003 * 110.41156 * 277.82400 * 26 8 7 29 29 H 1.09001 * 109.46582 * 274.89322 * 1 2 3 30 30 H 1.09002 * 109.46836 * 34.88506 * 1 2 3 31 31 H 1.08997 * 109.47464 * 154.88864 * 1 2 3 32 32 H 1.08001 * 126.80502 * 180.25210 * 5 4 3 33 33 H 1.09002 * 109.47252 * 164.71032 * 7 6 2 34 34 H 1.08998 * 109.47095 * 44.70447 * 7 6 2 35 35 H 1.08994 * 110.41301 * 82.18107 * 9 8 7 36 36 H 1.09002 * 110.50905 * 319.78375 * 9 8 7 37 37 H 1.08998 * 110.32638 * 264.95855 * 10 9 8 38 38 H 1.09000 * 110.32493 * 142.74444 * 10 9 8 39 39 H 0.96993 * 120.00134 * 266.44880 * 13 11 10 40 40 H 1.09000 * 109.47430 * 59.99084 * 16 14 13 41 41 H 1.09000 * 109.47041 * 299.99532 * 16 14 13 42 42 H 0.97001 * 120.00481 * 180.02562 * 21 20 18 43 43 H 1.09003 * 109.46945 * 304.82417 * 28 26 8 44 44 H 1.08996 * 109.47157 * 64.82381 * 28 26 8 45 45 H 1.08998 * 109.47227 * 184.82586 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0735 0.0000 4 7 3.4764 0.7563 -0.0005 5 6 3.6214 -0.5374 0.0045 6 6 2.3179 -1.0850 -0.0005 7 6 1.9223 -2.5391 -0.0002 8 7 1.4553 -2.9194 1.3396 9 6 2.5971 -3.0748 2.2772 10 6 2.0483 -3.9624 3.4149 11 6 0.8754 -4.7418 2.7849 12 1 -0.0554 -4.5076 3.3013 13 7 1.1362 -6.1825 2.8359 14 6 0.7985 -6.8900 3.9323 15 8 0.2793 -6.3339 4.8768 16 6 1.0662 -8.3721 3.9845 17 16 0.5054 -9.0308 5.5744 18 6 0.9269 -10.7291 5.3678 19 1 1.3901 -11.0629 4.4510 20 6 0.6589 -11.6389 6.3811 21 7 0.9688 -12.9086 6.2247 22 14 -0.1417 -11.0615 7.9672 23 1 -1.6183 -11.1493 7.8367 24 1 0.3081 -11.9222 9.0905 25 1 0.2488 -9.6540 8.2348 26 6 0.8144 -4.2595 1.3197 27 1 1.3710 -4.9375 0.6728 28 6 -0.6390 -4.1490 0.8544 29 1 -0.3632 0.0877 1.0240 30 1 -0.3633 0.8430 -0.5878 31 1 -0.3634 -0.9305 -0.4361 32 1 4.5528 -1.0841 0.0091 33 1 2.7833 -3.1500 -0.2718 34 1 1.1217 -2.6980 -0.7227 35 1 2.9040 -2.1042 2.6668 36 1 3.4341 -3.5666 1.7815 37 1 1.6927 -3.3444 4.2393 38 1 2.8179 -4.6519 3.7620 39 1 1.5516 -6.6273 2.0807 40 1 2.1354 -8.5524 3.8736 41 1 0.5285 -8.8671 3.1758 42 1 0.7811 -13.5445 6.9327 43 1 -1.1692 -3.4355 1.4853 44 1 -0.6643 -3.8078 -0.1804 45 1 -1.1190 -5.1249 0.9271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656920621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:41 Heat of formation + Delta-G solvation = 28.785744 kcal Electronic energy + Delta-G solvation = -26616.105391 eV Core-core repulsion = 22763.196720 eV Total energy + Delta-G solvation = -3852.908671 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.25908 -40.28016 -38.65327 -35.58820 -33.89593 -33.46076 -32.46267 -31.76082 -31.28322 -29.23543 -28.07615 -26.06961 -25.67438 -25.32999 -22.95492 -22.05493 -20.89537 -20.77593 -19.96412 -17.95805 -17.89173 -17.49111 -16.78080 -16.45438 -15.88055 -15.40728 -15.20282 -15.00811 -14.85771 -14.56718 -14.25023 -13.92260 -13.73806 -13.55925 -13.45898 -13.14562 -12.97208 -12.81756 -12.76371 -12.45782 -12.27969 -11.92245 -11.86804 -11.67221 -11.47861 -11.31386 -11.28015 -11.02787 -10.90541 -10.66995 -10.61184 -9.88134 -9.59396 -9.50322 -9.06174 -9.00566 -8.97356 -8.52969 -6.94494 -6.31163 -4.03173 1.12534 1.85291 2.70227 2.75811 2.91565 3.21433 3.31562 3.48619 3.53441 3.74836 3.91142 4.12773 4.22696 4.31042 4.40213 4.42481 4.69786 4.70937 4.77929 4.84609 4.90693 5.03694 5.04978 5.07810 5.08043 5.09527 5.15605 5.28328 5.34826 5.42516 5.47235 5.49501 5.51161 5.68162 5.71893 5.72381 5.87136 5.92304 5.96081 5.97581 6.27700 6.51998 6.61791 7.54274 7.91294 7.91750 8.39055 8.44390 9.14981 10.77993 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033198 B = 0.001922 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.221564 B =14561.911284 C =14657.300680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.007 4.007 3 O 0.092 5.908 4 N -0.368 5.368 5 C -0.002 4.002 6 C -0.199 4.199 7 C 0.123 3.877 8 N -0.499 5.499 9 C 0.036 3.964 10 C -0.136 4.136 11 C 0.150 3.850 12 H 0.101 0.899 13 N -0.732 5.732 14 C 0.532 3.468 15 O -0.516 6.516 16 C -0.125 4.125 17 S -0.141 6.141 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.055 3.945 27 H 0.059 0.941 28 C -0.137 4.137 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.186 0.814 33 H 0.052 0.948 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.046 0.954 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.397 0.603 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.271 0.729 43 H 0.068 0.932 44 H 0.055 0.945 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.888 24.298 -17.137 29.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.071 4.071 3 O 0.028 5.972 4 N -0.072 5.072 5 C -0.181 4.181 6 C -0.204 4.204 7 C -0.005 4.005 8 N -0.223 5.223 9 C -0.092 4.092 10 C -0.175 4.175 11 C 0.044 3.956 12 H 0.119 0.881 13 N -0.386 5.386 14 C 0.318 3.682 15 O -0.390 6.390 16 C -0.275 4.275 17 S 0.085 5.915 18 C -0.670 4.670 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.516 5.516 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.054 4.054 27 H 0.077 0.923 28 C -0.195 4.195 29 H 0.110 0.890 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.203 0.797 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.232 0.768 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.501 26.500 -15.319 30.614 hybrid contribution 1.065 -2.387 -1.072 2.825 sum 1.566 24.114 -16.391 29.199 Atomic orbital electron populations 1.20325 0.83759 1.04200 1.04432 1.24328 0.96303 0.85555 1.00948 1.84805 1.11457 1.33287 1.67645 1.73897 0.97215 1.16759 1.19355 1.24913 0.99665 0.90392 1.03142 1.20844 0.91940 0.96878 1.10734 1.20392 0.99673 0.88942 0.91534 1.65371 1.23964 1.25708 1.07283 1.23128 0.92209 1.00153 0.93681 1.22777 0.98221 0.98519 0.97999 1.21607 0.99556 0.79953 0.94519 0.88100 1.46091 1.65009 1.08196 1.19342 1.20278 0.77260 0.88708 0.81914 1.90707 1.41318 1.71536 1.35401 1.23283 1.05440 0.93633 1.05162 1.84799 1.81648 1.08544 1.16469 1.22312 1.47178 0.90324 1.07142 0.89409 1.24717 0.94239 0.94043 0.98336 1.69933 1.45830 1.01767 1.34115 0.86733 0.80725 0.81377 0.83004 1.19186 1.19939 1.15932 1.22854 0.96864 0.89797 0.95861 0.92259 1.21736 0.94029 1.02660 1.01050 0.88965 0.90248 0.89018 0.79668 0.92932 0.89264 0.90162 0.93591 0.90214 0.90459 0.76829 0.88537 0.88517 0.91926 0.91273 0.92587 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.30 10.33 36.01 0.37 0.07 16 2 C -0.01 -0.05 7.49 -35.30 -0.26 -0.32 16 3 O 0.09 0.88 11.20 17.20 0.19 1.07 16 4 N -0.37 -3.81 12.07 30.36 0.37 -3.44 16 5 C 0.00 -0.02 12.16 -17.05 -0.21 -0.22 16 6 C -0.20 -1.47 5.52 -104.42 -0.58 -2.04 16 7 C 0.12 0.74 5.06 -4.98 -0.03 0.72 16 8 N -0.50 -3.61 5.00 -223.57 -1.12 -4.72 16 9 C 0.04 0.29 6.14 -2.18 -0.01 0.28 16 10 C -0.14 -1.37 6.78 -25.34 -0.17 -1.54 16 11 C 0.15 1.54 2.91 -66.55 -0.19 1.35 16 12 H 0.10 1.26 7.36 -51.93 -0.38 0.88 16 13 N -0.73 -8.42 5.04 -52.47 -0.26 -8.69 16 14 C 0.53 8.87 7.84 -10.99 -0.09 8.79 16 15 O -0.52 -10.62 15.56 5.55 0.09 -10.53 16 16 C -0.12 -2.31 6.16 36.00 0.22 -2.08 16 17 S -0.14 -3.50 18.55 -107.50 -1.99 -5.50 16 18 C -0.52 -14.83 10.04 30.94 0.31 -14.52 16 19 H 0.09 2.60 8.03 -52.48 -0.42 2.18 16 20 C 0.10 2.76 5.50 -17.44 -0.10 2.67 16 21 N -0.88 -26.31 13.97 55.49 0.78 -25.54 16 22 Si 0.86 21.58 27.73 -169.99 -4.71 16.87 16 23 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 26 C 0.05 0.40 2.58 -66.07 -0.17 0.23 16 27 H 0.06 0.39 7.59 -51.93 -0.39 0.00 16 28 C -0.14 -0.91 9.30 37.16 0.35 -0.57 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.31 7.71 -51.93 -0.40 -0.09 16 32 H 0.19 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.05 0.29 7.75 -51.93 -0.40 -0.11 16 34 H 0.09 0.44 6.96 -51.93 -0.36 0.08 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.34 7.74 -51.93 -0.40 -0.06 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 0.85 7.95 -51.93 -0.41 0.44 16 39 H 0.40 3.49 8.34 -40.82 -0.34 3.15 16 40 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 41 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 42 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.29 7.38 -51.93 -0.38 -0.09 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 386.22 15.07 5.82 5.82 Total: -1.00 -34.29 386.22 -8.27 -42.56 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -6.86 Total: -0.70 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -0.56 Total: -7.19 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: -0.24 Total: -42.39 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.28 Total: -9.46 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.71 Total: 16.87 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -1.99 Total: -5.50 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.29 -8.27 -42.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656920621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.341 kcal (2) G-P(sol) polarization free energy of solvation -34.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds