Wall clock time and date at job start Sat Apr 11 2020 05:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34033 * 126.78124 * 2 1 4 4 N 1.20919 * 111.57133 * 180.02562 * 3 2 1 5 5 C 1.30182 * 111.60403 * 359.74295 * 4 3 2 6 6 C 1.35451 * 126.77225 * 180.02562 * 2 1 3 7 7 C 1.50699 * 128.00929 * 359.95708 * 6 2 1 8 8 N 1.46897 * 109.47209 * 284.70357 * 7 6 2 9 9 C 1.48559 * 111.00452 * 284.48611 * 8 7 6 10 10 C 1.54380 * 104.59597 * 200.95911 * 9 8 7 11 11 C 1.54268 * 105.06009 * 23.85207 * 10 9 8 12 12 H 1.08997 * 110.31988 * 240.99991 * 11 10 9 13 13 N 1.46501 * 110.32274 * 118.89664 * 11 10 9 14 14 C 1.34775 * 119.99760 * 86.45831 * 13 11 10 15 15 O 1.21284 * 120.00572 * 359.97438 * 14 13 11 16 16 C 1.50699 * 119.99724 * 179.97438 * 14 13 11 17 17 S 1.80996 * 109.47227 * 179.97438 * 16 14 13 18 18 C 1.76202 * 100.00324 * 179.97438 * 17 16 14 19 19 H 1.08005 * 119.99943 * 0.02562 * 18 17 16 20 20 C 1.38794 * 120.00411 * 180.27284 * 18 17 16 21 21 N 1.31624 * 120.00466 * 179.72668 * 20 18 17 22 22 Si 1.86810 * 119.99790 * 359.72421 * 20 18 17 23 23 H 1.48497 * 109.46734 * 90.00027 * 22 20 18 24 24 H 1.48496 * 109.46882 * 210.00022 * 22 20 18 25 25 H 1.48498 * 109.47033 * 330.00032 * 22 20 18 26 26 C 1.48565 * 111.00166 * 169.06349 * 8 7 6 27 27 H 1.08998 * 110.40840 * 40.26237 * 26 8 7 28 28 C 1.53003 * 110.41156 * 277.82400 * 26 8 7 29 29 H 1.09001 * 109.46582 * 274.89322 * 1 2 3 30 30 H 1.09002 * 109.46836 * 34.88506 * 1 2 3 31 31 H 1.08997 * 109.47464 * 154.88864 * 1 2 3 32 32 H 1.08001 * 126.80502 * 180.25210 * 5 4 3 33 33 H 1.09002 * 109.47252 * 164.71032 * 7 6 2 34 34 H 1.08998 * 109.47095 * 44.70447 * 7 6 2 35 35 H 1.08994 * 110.41301 * 82.18107 * 9 8 7 36 36 H 1.09002 * 110.50905 * 319.78375 * 9 8 7 37 37 H 1.08998 * 110.32638 * 264.95855 * 10 9 8 38 38 H 1.09000 * 110.32493 * 142.74444 * 10 9 8 39 39 H 0.96993 * 120.00134 * 266.44880 * 13 11 10 40 40 H 1.09000 * 109.47430 * 59.99084 * 16 14 13 41 41 H 1.09000 * 109.47041 * 299.99532 * 16 14 13 42 42 H 0.97001 * 120.00481 * 180.02562 * 21 20 18 43 43 H 1.09003 * 109.46945 * 304.82417 * 28 26 8 44 44 H 1.08996 * 109.47157 * 64.82381 * 28 26 8 45 45 H 1.08998 * 109.47227 * 184.82586 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0735 0.0000 4 7 3.4764 0.7563 -0.0005 5 6 3.6214 -0.5374 0.0045 6 6 2.3179 -1.0850 -0.0005 7 6 1.9223 -2.5391 -0.0002 8 7 1.4553 -2.9194 1.3396 9 6 2.5971 -3.0748 2.2772 10 6 2.0483 -3.9624 3.4149 11 6 0.8754 -4.7418 2.7849 12 1 -0.0554 -4.5076 3.3013 13 7 1.1362 -6.1825 2.8359 14 6 0.7985 -6.8900 3.9323 15 8 0.2793 -6.3339 4.8768 16 6 1.0662 -8.3721 3.9845 17 16 0.5054 -9.0308 5.5744 18 6 0.9269 -10.7291 5.3678 19 1 1.3901 -11.0629 4.4510 20 6 0.6589 -11.6389 6.3811 21 7 0.9688 -12.9086 6.2247 22 14 -0.1417 -11.0615 7.9672 23 1 -1.6183 -11.1493 7.8367 24 1 0.3081 -11.9222 9.0905 25 1 0.2488 -9.6540 8.2348 26 6 0.8144 -4.2595 1.3197 27 1 1.3710 -4.9375 0.6728 28 6 -0.6390 -4.1490 0.8544 29 1 -0.3632 0.0877 1.0240 30 1 -0.3633 0.8430 -0.5878 31 1 -0.3634 -0.9305 -0.4361 32 1 4.5528 -1.0841 0.0091 33 1 2.7833 -3.1500 -0.2718 34 1 1.1217 -2.6980 -0.7227 35 1 2.9040 -2.1042 2.6668 36 1 3.4341 -3.5666 1.7815 37 1 1.6927 -3.3444 4.2393 38 1 2.8179 -4.6519 3.7620 39 1 1.5516 -6.6273 2.0807 40 1 2.1354 -8.5524 3.8736 41 1 0.5285 -8.8671 3.1758 42 1 0.7811 -13.5445 6.9327 43 1 -1.1692 -3.4355 1.4853 44 1 -0.6643 -3.8078 -0.1804 45 1 -1.1190 -5.1249 0.9271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656920621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:40 Heat of formation + Delta-G solvation = 4.491530 kcal Electronic energy + Delta-G solvation = -26617.158867 eV Core-core repulsion = 22763.196720 eV Total energy + Delta-G solvation = -3853.962147 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.86479 -41.21972 -39.70864 -36.33239 -34.82452 -34.66105 -34.01945 -32.40278 -32.18230 -30.41596 -28.61713 -27.85722 -26.67193 -26.08689 -23.53260 -22.85466 -21.78201 -21.53082 -20.84721 -19.82914 -18.58316 -18.13357 -17.87068 -17.61473 -17.08745 -16.69959 -16.23714 -16.11751 -15.83606 -15.63962 -15.23064 -14.89924 -14.74169 -14.52004 -14.47840 -13.96203 -13.89053 -13.67302 -13.53379 -13.34054 -13.17742 -13.02345 -12.94957 -12.72135 -12.60951 -12.48340 -12.33750 -12.21640 -11.86860 -11.85261 -11.63494 -11.27328 -11.16692 -10.98539 -10.52467 -10.12536 -10.06865 -9.52363 -8.98688 -8.51169 -6.21633 0.56412 0.99524 1.27844 1.31666 1.47246 1.56393 1.57531 2.17986 2.25051 2.27058 2.71565 2.87143 3.04751 3.38287 3.43132 3.70206 3.76071 3.88754 3.91749 4.07345 4.18327 4.21020 4.26088 4.30352 4.46621 4.48828 4.52202 4.61993 4.65178 4.75197 4.78950 4.88415 4.90343 4.95424 5.02706 5.05626 5.08799 5.13347 5.32432 5.41698 5.42661 5.71075 5.84414 5.98500 6.11929 6.47170 6.94232 7.21277 7.32756 8.61044 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033198 B = 0.001922 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.221564 B =14561.911284 C =14657.300680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.008 4.008 3 O 0.073 5.927 4 N -0.403 5.403 5 C -0.004 4.004 6 C -0.205 4.205 7 C 0.126 3.874 8 N -0.502 5.502 9 C 0.045 3.955 10 C -0.135 4.135 11 C 0.147 3.853 12 H 0.078 0.922 13 N -0.705 5.705 14 C 0.538 3.462 15 O -0.560 6.560 16 C -0.111 4.111 17 S -0.177 6.177 18 C -0.528 4.528 19 H 0.063 0.937 20 C 0.045 3.955 21 N -0.917 5.917 22 Si 0.914 3.086 23 H -0.262 1.262 24 H -0.260 1.260 25 H -0.237 1.237 26 C 0.066 3.934 27 H 0.079 0.921 28 C -0.135 4.135 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.204 0.796 33 H 0.064 0.936 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.415 0.585 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.277 0.723 43 H 0.060 0.940 44 H 0.078 0.922 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.629 25.178 -18.766 31.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.073 4.073 3 O 0.012 5.988 4 N -0.111 5.111 5 C -0.182 4.182 6 C -0.210 4.210 7 C -0.002 4.002 8 N -0.227 5.227 9 C -0.083 4.083 10 C -0.174 4.174 11 C 0.041 3.959 12 H 0.096 0.904 13 N -0.359 5.359 14 C 0.324 3.676 15 O -0.438 6.438 16 C -0.262 4.262 17 S 0.050 5.950 18 C -0.675 4.675 19 H 0.081 0.919 20 C -0.161 4.161 21 N -0.555 5.555 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.185 1.185 25 H -0.161 1.161 26 C -0.043 4.043 27 H 0.097 0.903 28 C -0.193 4.193 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.125 0.875 32 H 0.221 0.779 33 H 0.083 0.917 34 H 0.125 0.875 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.253 0.747 40 H 0.131 0.869 41 H 0.133 0.867 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.097 0.903 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.247 27.396 -17.004 32.245 hybrid contribution 1.189 -2.592 -0.706 2.938 sum 1.436 24.805 -17.710 30.512 Atomic orbital electron populations 1.20478 0.81723 1.05590 1.04846 1.24933 0.97458 0.85146 0.99742 1.84765 1.11549 1.34270 1.68225 1.73890 0.97863 1.18037 1.21289 1.25339 1.00946 0.90033 1.01918 1.21029 0.91463 0.97598 1.10871 1.20466 1.00800 0.88032 0.90883 1.65348 1.23727 1.25555 1.08053 1.23013 0.92758 0.99363 0.93139 1.22703 0.97800 0.98471 0.98464 1.21705 0.98619 0.78718 0.96821 0.90373 1.45818 1.63232 1.08685 1.18180 1.19919 0.77158 0.87925 0.82619 1.90701 1.43737 1.72002 1.37313 1.23273 1.06414 0.94979 1.01541 1.84739 1.82261 1.06357 1.21665 1.22462 1.46471 0.92434 1.06179 0.91885 1.25562 0.94862 0.94201 1.01438 1.70011 1.47125 1.02854 1.35464 0.85872 0.79947 0.80919 0.79668 1.18672 1.18473 1.16115 1.22782 0.97802 0.90082 0.93615 0.90339 1.21726 0.93109 1.02219 1.02223 0.88885 0.88958 0.87531 0.77893 0.91749 0.87466 0.90835 0.92222 0.91765 0.91417 0.74704 0.86909 0.86731 0.91402 0.92063 0.90328 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.33 71.24 0.74 0.30 16 2 C -0.01 -0.11 7.49 25.04 0.19 0.08 16 3 O 0.07 1.35 11.20 71.71 0.80 2.15 16 4 N -0.40 -8.17 12.07 -59.25 -0.72 -8.88 16 5 C 0.00 -0.05 12.16 85.71 1.04 0.99 16 6 C -0.21 -2.55 5.52 -19.73 -0.11 -2.66 16 7 C 0.13 1.06 5.06 85.56 0.43 1.50 16 8 N -0.50 -5.79 5.00 -861.25 -4.31 -10.10 16 9 C 0.05 0.63 6.14 86.45 0.53 1.16 16 10 C -0.14 -2.57 6.78 31.49 0.21 -2.36 16 11 C 0.15 2.77 2.91 45.89 0.13 2.91 16 12 H 0.08 1.91 7.36 -2.39 -0.02 1.89 16 13 N -0.71 -14.65 5.04 -438.29 -2.21 -16.86 16 14 C 0.54 17.23 7.84 87.66 0.69 17.92 16 15 O -0.56 -22.90 15.56 -3.04 -0.05 -22.95 16 16 C -0.11 -3.96 6.16 71.24 0.44 -3.52 16 17 S -0.18 -8.73 18.55 -56.49 -1.05 -9.78 16 18 C -0.53 -30.24 10.04 67.95 0.68 -29.56 16 19 H 0.06 3.80 8.03 -2.91 -0.02 3.77 16 20 C 0.04 2.60 5.50 84.86 0.47 3.07 16 21 N -0.92 -55.29 13.97 21.65 0.30 -54.99 16 22 Si 0.91 44.63 27.73 68.60 1.90 46.53 16 23 H -0.26 -12.48 7.11 99.48 0.71 -11.77 16 24 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.24 -11.57 6.74 99.48 0.67 -10.90 16 26 C 0.07 0.76 2.58 45.06 0.12 0.87 16 27 H 0.08 0.66 7.59 -2.39 -0.02 0.64 16 28 C -0.14 -1.38 9.30 71.98 0.67 -0.71 16 29 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.11 0.36 7.71 -2.39 -0.02 0.34 16 32 H 0.20 2.01 8.06 -2.91 -0.02 1.99 16 33 H 0.06 0.44 7.75 -2.39 -0.02 0.42 16 34 H 0.11 0.56 6.96 -2.39 -0.02 0.55 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.06 0.69 7.74 -2.39 -0.02 0.67 16 37 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.07 1.42 7.95 -2.39 -0.02 1.40 16 39 H 0.42 5.85 8.34 -92.71 -0.77 5.07 16 40 H 0.11 3.68 8.14 -2.40 -0.02 3.66 16 41 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 42 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 43 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.08 0.47 7.38 -2.39 -0.02 0.45 16 45 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -75.85 386.22 1.10 -74.75 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: 0.19 Total: 10.15 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: 6.23 Total: -10.02 kcal Atomic # 7 Polarization: -83.90 SS G_CDS: -6.93 Total: -90.82 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: 0.76 Total: -20.79 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.90 Total: 46.53 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.05 Total: -9.78 kcal Total: -75.85 1.10 -74.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656920621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.237 kcal (2) G-P(sol) polarization free energy of solvation -75.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds