Wall clock time and date at job start Sat Apr 11 2020 05:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30180 * 126.80372 * 2 1 4 4 O 1.20914 * 111.60872 * 179.97438 * 3 2 1 5 5 C 1.34042 * 111.56743 * 359.97438 * 4 3 2 6 6 C 1.35447 * 106.44576 * 359.75171 * 5 4 3 7 7 C 1.50699 * 128.01071 * 180.23262 * 6 5 4 8 8 N 1.46901 * 109.47027 * 260.16764 * 7 6 5 9 9 C 1.46904 * 110.99816 * 179.32495 * 8 7 6 10 10 H 1.08995 * 109.46882 * 176.46171 * 9 8 7 11 11 C 1.52999 * 109.47042 * 296.46153 * 9 8 7 12 12 N 1.46487 * 109.47523 * 305.00028 * 11 9 8 13 13 C 1.34783 * 120.00406 * 179.97438 * 12 11 9 14 14 O 1.21284 * 119.99773 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00197 * 179.97438 * 13 12 11 16 16 S 1.81000 * 109.47095 * 180.02562 * 15 13 12 17 17 C 1.76199 * 100.00100 * 180.02562 * 16 15 13 18 18 H 1.07996 * 119.99840 * 359.97438 * 17 16 15 19 19 C 1.38801 * 120.00011 * 179.97438 * 17 16 15 20 20 N 1.31624 * 119.99763 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00107 * 179.97438 * 19 17 16 22 22 H 1.48510 * 109.46823 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47058 * 120.00260 * 21 19 17 24 24 H 1.48500 * 109.47683 * 240.00695 * 21 19 17 25 25 C 1.53002 * 109.46800 * 56.46315 * 9 8 7 26 26 C 1.53004 * 117.49395 * 133.85709 * 25 9 8 27 27 C 1.52999 * 117.49928 * 65.19546 * 25 9 8 28 28 H 1.09001 * 109.46933 * 90.02715 * 1 2 3 29 29 H 1.09003 * 109.47185 * 210.02465 * 1 2 3 30 30 H 1.09000 * 109.47553 * 330.02485 * 1 2 3 31 31 H 1.07994 * 126.77660 * 180.02562 * 5 4 3 32 32 H 1.09003 * 109.46908 * 20.16515 * 7 6 5 33 33 H 1.08996 * 109.47526 * 140.16526 * 7 6 5 34 34 H 1.00895 * 110.99772 * 303.27971 * 8 7 6 35 35 H 1.09009 * 109.46980 * 65.00217 * 11 9 8 36 36 H 1.09001 * 109.46887 * 184.99563 * 11 9 8 37 37 H 0.97003 * 120.00067 * 0.02562 * 12 11 9 38 38 H 1.08995 * 109.47157 * 300.00318 * 15 13 12 39 39 H 1.09005 * 109.46983 * 60.00150 * 15 13 12 40 40 H 0.97006 * 119.99939 * 180.02562 * 20 19 17 41 41 H 1.08998 * 115.54981 * 279.51888 * 25 9 8 42 42 H 1.09000 * 117.50070 * 359.97438 * 26 25 9 43 43 H 1.09001 * 117.49667 * 145.02471 * 26 25 9 44 44 H 1.08997 * 117.49721 * 214.97704 * 27 25 9 45 45 H 1.09000 * 117.49882 * 359.97438 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7254 0.0005 5 6 3.6024 -0.6067 0.0015 6 6 2.3540 -1.1320 0.0072 7 6 1.9591 -2.5863 0.0153 8 7 1.5991 -3.0036 -1.3464 9 6 1.2231 -4.4233 -1.3799 10 1 0.9013 -4.6902 -2.3864 11 6 2.4284 -5.2795 -0.9859 12 7 3.5626 -4.9550 -1.8542 13 6 4.7403 -5.5896 -1.6899 14 8 4.8608 -6.4296 -0.8234 15 6 5.9070 -5.2563 -2.5836 16 16 7.3328 -6.2691 -2.1174 17 6 8.5157 -5.6893 -3.2876 18 1 8.2407 -4.9263 -4.0006 19 6 9.8010 -6.2134 -3.2929 20 7 10.1360 -7.1437 -2.4242 21 14 11.0548 -5.5993 -4.5339 22 1 10.4328 -4.5600 -5.3932 23 1 12.2173 -5.0170 -3.8164 24 1 11.5113 -6.7322 -5.3786 25 6 0.0780 -4.6708 -0.3958 26 6 -1.1062 -5.5067 -0.8858 27 6 -1.2638 -3.9968 -0.6892 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3634 0.8902 0.5134 31 1 4.5339 -1.1533 0.0025 32 1 2.7957 -3.1880 0.3705 33 1 1.1040 -2.7270 0.6764 34 1 0.8610 -2.4251 -1.7186 35 1 2.6950 -5.0761 0.0513 36 1 2.1763 -6.3342 -1.0961 37 1 3.4664 -4.2830 -2.5470 38 1 5.6403 -5.4604 -3.6205 39 1 6.1588 -4.2014 -2.4741 40 1 11.0344 -7.5097 -2.4277 41 1 0.3705 -4.7764 0.6489 42 1 -1.0696 -5.8798 -1.9093 43 1 -1.5931 -6.1617 -0.1632 44 1 -1.8542 -3.6591 0.1626 45 1 -1.3306 -3.3765 -1.5830 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661106431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:36 Heat of formation + Delta-G solvation = 21.524586 kcal Electronic energy + Delta-G solvation = -26655.911801 eV Core-core repulsion = 22802.688263 eV Total energy + Delta-G solvation = -3853.223539 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.85814 -40.75321 -39.55218 -36.77232 -35.84657 -34.57540 -34.50834 -32.83254 -31.30330 -29.63602 -29.12306 -27.64907 -26.83052 -23.92092 -23.14552 -22.71184 -22.22411 -21.56395 -20.65081 -19.73648 -18.55392 -18.46957 -17.81762 -17.42376 -17.13911 -16.85848 -16.42120 -16.03888 -15.97461 -15.80847 -15.28115 -15.10534 -14.59309 -14.38740 -14.23580 -14.20001 -14.03657 -13.53631 -13.41446 -13.28634 -13.13030 -13.04655 -12.90026 -12.85205 -12.56321 -12.38518 -12.17398 -11.88620 -11.69150 -11.24279 -11.16772 -11.13823 -10.83121 -10.81077 -10.41729 -10.23070 -9.98014 -9.40597 -8.62844 -8.32712 -6.09637 0.57340 1.24413 1.30593 1.42493 1.49894 1.61092 1.71011 2.28462 2.36073 2.39222 2.88030 3.01559 3.22981 3.35262 3.39837 3.61705 3.65115 3.86369 4.01308 4.08251 4.10722 4.16568 4.22899 4.32401 4.38467 4.50490 4.57261 4.59073 4.60059 4.68083 4.78751 4.84039 4.85393 4.90352 4.98392 4.99036 5.08675 5.27248 5.29548 5.30316 5.44679 5.53153 5.93623 6.22479 6.43142 6.65440 7.09129 7.32790 7.36261 8.76649 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011348 B = 0.002652 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.868270 B =10556.119741 C =12532.944463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.022 3.978 3 N -0.403 5.403 4 O 0.076 5.924 5 C -0.040 4.040 6 C -0.202 4.202 7 C 0.141 3.859 8 N -0.671 5.671 9 C 0.123 3.877 10 H 0.104 0.896 11 C 0.132 3.868 12 N -0.698 5.698 13 C 0.532 3.468 14 O -0.571 6.571 15 C -0.128 4.128 16 S -0.151 6.151 17 C -0.543 4.543 18 H 0.081 0.919 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 0.997 3.003 22 H -0.257 1.257 23 H -0.274 1.274 24 H -0.275 1.275 25 C -0.194 4.194 26 C -0.176 4.176 27 C -0.161 4.161 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.233 0.767 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.354 0.646 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.418 0.582 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.270 0.730 41 H 0.102 0.898 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.102 0.898 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.905 12.513 2.278 29.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.138 4.138 3 N -0.113 5.113 4 O 0.016 5.984 5 C -0.122 4.122 6 C -0.207 4.207 7 C 0.012 3.988 8 N -0.302 5.302 9 C 0.013 3.987 10 H 0.122 0.878 11 C 0.007 3.993 12 N -0.351 5.351 13 C 0.318 3.682 14 O -0.450 6.450 15 C -0.279 4.279 16 S 0.077 5.923 17 C -0.691 4.691 18 H 0.100 0.900 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.819 3.181 22 H -0.181 1.181 23 H -0.200 1.200 24 H -0.200 1.200 25 C -0.215 4.215 26 C -0.214 4.214 27 C -0.198 4.198 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.093 0.907 31 H 0.249 0.751 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.174 0.826 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.256 0.744 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.079 0.921 41 H 0.120 0.880 42 H 0.117 0.883 43 H 0.113 0.887 44 H 0.120 0.880 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -26.145 12.246 3.577 29.091 hybrid contribution 0.179 0.400 -1.136 1.218 sum -25.966 12.646 2.440 28.984 Atomic orbital electron populations 1.20304 0.84007 1.04471 1.04498 1.24046 1.00238 0.88163 1.01341 1.73846 0.89997 1.25655 1.21819 1.84795 1.21501 1.24102 1.68029 1.26375 1.02157 0.82836 1.00825 1.21296 0.92062 0.97529 1.09782 1.20045 1.00757 0.87160 0.90825 1.60590 1.45960 1.02734 1.20955 1.21275 0.90633 0.87586 0.99251 0.87848 1.21360 0.85119 0.98807 0.93997 1.45559 1.09651 1.42184 1.37724 1.20005 0.84073 0.80631 0.83511 1.90690 1.83815 1.34534 1.35929 1.23352 0.96733 1.05051 1.02790 1.85546 1.04944 1.53560 1.48287 1.23230 0.98727 1.26967 1.20215 0.90042 1.26102 0.99973 0.94733 0.98350 1.70187 1.20758 1.27397 1.36466 0.84929 0.77243 0.78372 0.77553 1.18064 1.19980 1.19997 1.22881 0.90299 1.07769 1.00539 1.23039 1.01092 0.94420 1.02838 1.22990 0.97478 0.95346 1.03995 0.88665 0.88461 0.90707 0.75075 0.90620 0.91880 0.82619 0.92588 0.92069 0.74449 0.87642 0.87390 0.92051 0.88016 0.88279 0.88713 0.87977 0.87682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.39 71.23 0.74 0.02 16 2 C 0.02 0.37 7.33 43.58 0.32 0.69 16 3 N -0.40 -9.20 12.07 -49.55 -0.60 -9.80 16 4 O 0.08 1.67 11.20 71.62 0.80 2.48 16 5 C -0.04 -0.70 12.26 67.17 0.82 0.12 16 6 C -0.20 -3.23 5.84 -19.73 -0.12 -3.34 16 7 C 0.14 1.80 5.51 85.56 0.47 2.28 16 8 N -0.67 -7.16 5.85 -495.57 -2.90 -10.06 16 9 C 0.12 1.37 2.81 44.92 0.13 1.50 16 10 H 0.10 1.02 7.94 -2.39 -0.02 1.00 16 11 C 0.13 2.56 4.77 86.38 0.41 2.98 16 12 N -0.70 -16.40 5.39 -463.07 -2.50 -18.90 16 13 C 0.53 18.94 7.85 87.65 0.69 19.63 16 14 O -0.57 -25.77 15.86 -3.04 -0.05 -25.82 16 15 C -0.13 -4.99 6.16 71.23 0.44 -4.55 16 16 S -0.15 -8.29 20.57 -56.49 -1.16 -9.46 16 17 C -0.54 -30.92 9.50 67.95 0.65 -30.27 16 18 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 19 C 0.01 0.74 5.49 84.86 0.47 1.21 16 20 N -0.91 -55.92 13.22 21.65 0.29 -55.63 16 21 Si 1.00 43.63 29.55 68.60 2.03 45.65 16 22 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 C -0.19 -1.80 3.79 -10.79 -0.04 -1.84 16 26 C -0.18 -1.52 10.18 30.62 0.31 -1.21 16 27 C -0.16 -0.97 10.03 30.62 0.31 -0.66 16 28 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.10 0.56 7.98 -2.39 -0.02 0.54 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.23 3.09 8.06 -2.91 -0.02 3.06 16 32 H 0.08 1.24 6.47 -2.39 -0.02 1.23 16 33 H 0.06 0.66 6.65 -2.39 -0.02 0.65 16 34 H 0.35 2.88 8.58 -89.70 -0.77 2.11 16 35 H 0.06 1.23 6.73 -2.38 -0.02 1.21 16 36 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.42 7.83 8.14 -92.71 -0.75 7.07 16 38 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 39 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 40 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 41 H 0.10 1.11 7.82 -2.39 -0.02 1.09 16 42 H 0.10 0.83 8.08 -2.39 -0.02 0.81 16 43 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.10 0.44 8.12 -2.39 -0.02 0.42 16 Total: -1.00 -78.16 394.60 1.01 -77.15 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -0.50 Total: 17.83 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: 5.59 Total: -13.45 kcal Atomic # 7 Polarization: -88.69 SS G_CDS: -5.71 Total: -94.39 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: 0.75 Total: -23.34 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.16 Total: -9.46 kcal Total: -78.16 1.01 -77.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661106431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.676 kcal (2) G-P(sol) polarization free energy of solvation -78.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds