Wall clock time and date at job start Sat Apr 11 2020 05:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33818 * 122.44767 * 2 1 4 4 S 1.70621 * 110.95277 * 179.78658 * 3 2 1 5 5 C 1.75833 * 91.56283 * 0.31104 * 4 3 2 6 6 C 1.46578 * 125.45604 * 179.97438 * 5 4 3 7 7 O 1.21703 * 120.00037 * 179.69245 * 6 5 4 8 8 N 1.34778 * 120.00352 * 359.69083 * 6 5 4 9 9 C 1.46500 * 120.00337 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47010 * 180.02562 * 9 8 6 11 11 C 1.53007 * 109.46975 * 180.02562 * 10 9 8 12 12 H 1.09000 * 109.46831 * 54.99657 * 11 10 9 13 13 C 1.52998 * 109.47211 * 175.00015 * 11 10 9 14 14 N 1.46906 * 109.47010 * 295.00047 * 11 10 9 15 15 C 1.46898 * 110.99888 * 155.00014 * 14 11 10 16 16 C 1.50705 * 109.46661 * 180.02562 * 15 14 11 17 17 O 1.21288 * 120.00125 * 359.97438 * 16 15 14 18 18 N 1.34775 * 119.99549 * 179.97438 * 16 15 14 19 19 C 1.37103 * 120.00062 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99229 * 0.02562 * 19 18 16 21 21 C 1.38942 * 120.00207 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99885 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00123 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47090 * 89.99727 * 23 21 19 25 25 H 1.48497 * 109.47239 * 210.00393 * 23 21 19 26 26 H 1.48506 * 109.46789 * 329.99864 * 23 21 19 27 27 C 1.36646 * 109.08471 * 359.69739 * 5 4 3 28 28 H 1.09002 * 109.46306 * 269.97019 * 1 2 3 29 29 H 1.08994 * 109.47479 * 29.96836 * 1 2 3 30 30 H 1.09004 * 109.46978 * 149.97666 * 1 2 3 31 31 H 1.07998 * 124.52257 * 0.03356 * 3 2 1 32 32 H 0.97001 * 119.99472 * 0.02562 * 8 6 5 33 33 H 1.09002 * 109.46838 * 60.00723 * 9 8 6 34 34 H 1.09000 * 109.47505 * 300.00502 * 9 8 6 35 35 H 1.08995 * 109.47218 * 60.00757 * 10 9 8 36 36 H 1.09000 * 109.47102 * 299.99815 * 10 9 8 37 37 H 1.09001 * 109.47093 * 179.97438 * 13 11 10 38 38 H 1.09002 * 109.47121 * 299.99744 * 13 11 10 39 39 H 1.09002 * 109.46901 * 59.99641 * 13 11 10 40 40 H 1.00902 * 110.99923 * 278.95955 * 14 11 10 41 41 H 1.08995 * 109.47296 * 299.99911 * 15 14 11 42 42 H 1.08997 * 109.47334 * 60.00212 * 15 14 11 43 43 H 0.97003 * 120.00664 * 0.02562 * 18 16 15 44 44 H 0.97010 * 119.99812 * 180.02562 * 22 21 19 45 45 H 1.07994 * 123.35010 * 180.25077 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 16 3.8970 0.7893 0.0059 5 6 3.5937 -0.9427 -0.0011 6 6 4.6232 -1.9862 -0.0007 7 8 4.3002 -3.1596 -0.0003 8 7 5.9274 -1.6462 -0.0010 9 6 6.9562 -2.6891 0.0000 10 6 8.3413 -2.0391 0.0001 11 6 9.4158 -3.1283 0.0005 12 1 9.2515 -3.8010 -0.8413 13 6 10.7970 -2.4822 -0.1251 14 7 9.3428 -3.8878 1.2558 15 6 9.8904 -5.2402 1.0854 16 6 9.7981 -5.9876 2.3908 17 8 9.3233 -5.4467 3.3671 18 7 10.2431 -7.2571 2.4734 19 6 10.1597 -7.9369 3.6611 20 1 9.7368 -7.4552 4.5303 21 6 10.6180 -9.2458 3.7460 22 7 11.1319 -9.8320 2.6882 23 14 10.5036 -10.1723 5.3641 24 1 9.2031 -10.8857 5.4351 25 1 11.6130 -11.1555 5.4511 26 1 10.6036 -9.2120 6.4925 27 6 2.2447 -1.1601 -0.0007 28 1 -0.3632 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5133 30 1 -0.3633 -0.8898 -0.5142 31 1 1.8025 2.1232 0.0005 32 1 6.1847 -0.7110 -0.0010 33 1 6.8457 -3.3093 -0.8896 34 1 6.8456 -3.3080 0.8904 35 1 8.4516 -1.4192 0.8899 36 1 8.4522 -1.4200 -0.8901 37 1 11.5625 -3.2581 -0.1244 38 1 10.8512 -1.9186 -1.0565 39 1 10.9612 -1.8094 0.7167 40 1 9.8132 -3.3985 2.0024 41 1 9.3197 -5.7699 0.3228 42 1 10.9339 -5.1736 0.7775 43 1 10.6232 -7.6896 1.6927 44 1 11.4516 -10.7460 2.7474 45 1 1.8020 -2.1452 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662915153.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:39 Heat of formation + Delta-G solvation = -79.174129 kcal Electronic energy + Delta-G solvation = -25627.768972 eV Core-core repulsion = 21770.178809 eV Total energy + Delta-G solvation = -3857.590162 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.90569 -40.21514 -39.06875 -38.26604 -36.11483 -35.77692 -33.34011 -32.81394 -31.91248 -29.86029 -28.64966 -27.95651 -26.07070 -25.53818 -23.61252 -22.09738 -21.44474 -21.05715 -19.97083 -19.92969 -19.37951 -17.74635 -17.27410 -17.00154 -16.84826 -16.71289 -16.37648 -16.09174 -15.66389 -15.59811 -15.23968 -14.88124 -14.66760 -14.47727 -14.25354 -14.07880 -14.04189 -13.56576 -13.50562 -13.17831 -13.09144 -12.93161 -12.85625 -12.80664 -12.66626 -12.43468 -12.28212 -12.20278 -12.10883 -11.90708 -11.74391 -11.51716 -11.25815 -10.35158 -10.28694 -10.02244 -9.82763 -9.34176 -9.23977 -8.47559 -5.96313 -0.53310 0.46603 0.90146 1.32619 1.36884 1.40166 1.53096 2.04892 2.05115 2.11475 2.28401 2.95151 3.19697 3.55424 3.72068 3.84905 4.05422 4.12310 4.18341 4.21594 4.33497 4.38356 4.45744 4.49119 4.54162 4.62083 4.68389 4.72686 4.84468 4.88474 4.91771 5.01709 5.04309 5.18166 5.20160 5.31718 5.37580 5.38851 5.39835 5.46340 5.91765 6.14733 6.39234 6.47980 6.59525 7.07154 7.11838 7.55717 8.11327 8.69850 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014640 B = 0.001910 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.145743 B =14656.373533 C =16048.318167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.132 4.132 3 C -0.225 4.225 4 S 0.253 5.747 5 C -0.300 4.300 6 C 0.580 3.420 7 O -0.581 6.581 8 N -0.711 5.711 9 C 0.127 3.873 10 C -0.104 4.104 11 C 0.084 3.916 12 H 0.084 0.916 13 C -0.175 4.175 14 N -0.679 5.679 15 C 0.067 3.933 16 C 0.436 3.564 17 O -0.624 6.624 18 N -0.574 5.574 19 C -0.334 4.334 20 H 0.077 0.923 21 C -0.014 4.014 22 N -0.920 5.920 23 Si 0.993 3.007 24 H -0.273 1.273 25 H -0.268 1.268 26 H -0.273 1.273 27 C -0.063 4.063 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.200 0.800 32 H 0.411 0.589 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.050 0.950 38 H 0.084 0.916 39 H 0.060 0.940 40 H 0.345 0.655 41 H 0.098 0.902 42 H 0.069 0.931 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.035 26.798 -12.646 31.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.144 4.144 3 C -0.363 4.363 4 S 0.521 5.479 5 C -0.420 4.420 6 C 0.367 3.633 7 O -0.463 6.463 8 N -0.363 5.363 9 C 0.004 3.996 10 C -0.142 4.142 11 C -0.026 4.026 12 H 0.102 0.898 13 C -0.234 4.234 14 N -0.311 5.311 15 C -0.065 4.065 16 C 0.224 3.776 17 O -0.510 6.510 18 N -0.212 5.212 19 C -0.464 4.464 20 H 0.095 0.905 21 C -0.214 4.214 22 N -0.561 5.561 23 Si 0.817 3.183 24 H -0.198 1.198 25 H -0.193 1.193 26 H -0.197 1.197 27 C -0.098 4.098 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.218 0.782 32 H 0.247 0.753 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.121 0.879 37 H 0.069 0.931 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.164 0.836 41 H 0.116 0.884 42 H 0.086 0.914 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.760 26.860 -12.123 31.729 hybrid contribution -0.120 -1.637 0.490 1.713 sum -11.879 25.222 -11.634 30.210 Atomic orbital electron populations 1.20573 0.87708 1.03801 1.03140 1.18964 0.99288 0.90900 1.05268 1.25595 0.98331 1.04424 1.07934 1.82611 1.04194 0.94409 1.66640 1.24553 0.97628 0.99115 1.20690 1.17412 0.82763 0.87325 0.75755 1.90832 1.82515 1.20634 1.52298 1.45786 1.04826 1.11116 1.74527 1.21300 0.86907 0.89918 1.01492 1.21720 0.90806 0.97578 1.04109 1.21631 0.94664 0.94791 0.91539 0.89792 1.22426 0.96150 1.01225 1.03599 1.60200 1.61570 1.01712 1.07655 1.21525 0.99917 0.91060 0.94047 1.20970 0.82386 0.82800 0.91430 1.90487 1.50749 1.69173 1.40619 1.41945 1.55010 1.11845 1.12371 1.19659 1.40030 0.96262 0.90436 0.90465 1.26050 0.95937 0.97086 1.02306 1.69676 1.41175 1.14725 1.30516 0.84927 0.78286 0.77755 0.77353 1.19837 1.19293 1.19740 1.20847 0.91398 1.00610 0.96929 0.90571 0.89606 0.91385 0.78248 0.75282 0.92459 0.93186 0.90520 0.87876 0.93138 0.89718 0.92052 0.83583 0.88407 0.91362 0.76995 0.91297 0.84348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.92 10.13 71.24 0.72 -0.20 16 2 C -0.13 -1.96 5.78 -21.05 -0.12 -2.08 16 3 C -0.23 -2.49 10.67 66.81 0.71 -1.78 16 4 S 0.25 3.12 22.16 -56.49 -1.25 1.87 16 5 C -0.30 -6.62 6.45 24.07 0.16 -6.46 16 6 C 0.58 16.60 7.78 86.42 0.67 17.28 16 7 O -0.58 -22.54 16.84 -4.36 -0.07 -22.61 16 8 N -0.71 -15.91 5.55 -467.17 -2.59 -18.50 16 9 C 0.13 3.19 5.56 86.38 0.48 3.67 16 10 C -0.10 -1.81 5.01 30.60 0.15 -1.66 16 11 C 0.08 1.74 2.59 44.92 0.12 1.86 16 12 H 0.08 1.71 7.80 -2.39 -0.02 1.69 16 13 C -0.18 -2.88 9.16 71.98 0.66 -2.22 16 14 N -0.68 -20.91 5.33 -495.56 -2.64 -23.55 16 15 C 0.07 2.33 5.97 85.56 0.51 2.84 16 16 C 0.44 21.46 7.82 87.66 0.69 22.15 16 17 O -0.62 -35.73 15.78 -3.05 -0.05 -35.77 16 18 N -0.57 -30.46 5.29 -306.99 -1.62 -32.09 16 19 C -0.33 -19.60 9.68 84.04 0.81 -18.79 16 20 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 21 C -0.01 -0.78 5.50 84.92 0.47 -0.31 16 22 N -0.92 -50.80 13.05 21.66 0.28 -50.52 16 23 Si 0.99 44.20 29.55 68.60 2.03 46.23 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 26 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 27 C -0.06 -1.34 9.80 21.72 0.21 -1.13 16 28 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.09 0.51 8.12 -2.39 -0.02 0.49 16 30 H 0.07 0.69 8.13 -2.39 -0.02 0.67 16 31 H 0.20 0.89 8.06 -2.91 -0.02 0.86 16 32 H 0.41 6.15 7.59 -92.71 -0.70 5.44 16 33 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.05 1.70 7.75 -2.39 -0.02 1.69 16 35 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.05 0.93 7.45 -2.39 -0.02 0.91 16 38 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.06 0.99 8.13 -2.39 -0.02 0.98 16 40 H 0.34 11.12 8.17 -89.69 -0.73 10.39 16 41 H 0.10 3.19 8.05 -2.39 -0.02 3.18 16 42 H 0.07 2.06 7.44 -2.39 -0.02 2.04 16 43 H 0.40 19.91 7.90 -92.71 -0.73 19.18 16 44 H 0.28 14.32 8.31 -92.70 -0.77 13.55 16 45 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -79.44 395.58 -0.81 -80.25 By element: Atomic # 1 Polarization: 42.64 SS G_CDS: -1.13 Total: 41.50 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: 6.24 Total: 13.18 kcal Atomic # 7 Polarization: -118.08 SS G_CDS: -6.57 Total: -124.65 kcal Atomic # 8 Polarization: -58.26 SS G_CDS: -0.12 Total: -58.38 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -1.25 Total: 1.87 kcal Total: -79.44 -0.81 -80.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662915153.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.081 kcal (2) G-P(sol) polarization free energy of solvation -79.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds