Wall clock time and date at job start Sat Apr 11 2020 05:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 S 1.75505 * 124.71203 * 2 1 4 4 C 1.70444 * 92.44545 * 180.08168 * 3 2 1 5 5 C 1.36014 * 110.81789 * 359.70088 * 4 3 2 6 6 C 1.47190 * 123.46278 * 180.24944 * 5 4 3 7 7 O 1.21635 * 119.99941 * 179.97438 * 6 5 4 8 8 N 1.34769 * 119.99768 * 359.97438 * 6 5 4 9 9 C 1.46503 * 119.99689 * 179.97438 * 8 6 5 10 10 C 1.53009 * 109.46929 * 179.97438 * 9 8 6 11 11 N 1.46899 * 109.46810 * 180.02562 * 10 9 8 12 12 C 1.46899 * 110.99922 * 66.04775 * 11 10 9 13 13 C 1.46899 * 110.99873 * 190.00340 * 11 10 9 14 14 C 1.50700 * 109.47178 * 170.00152 * 13 11 10 15 15 O 1.21295 * 120.00015 * 359.97438 * 14 13 11 16 16 N 1.34776 * 120.00074 * 179.97438 * 14 13 11 17 17 C 1.37093 * 120.00357 * 179.97438 * 16 14 13 18 18 H 1.08003 * 120.00030 * 0.02562 * 17 16 14 19 19 C 1.38953 * 120.00426 * 180.02562 * 17 16 14 20 20 N 1.31411 * 119.99668 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00225 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46931 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47201 * 119.99491 * 21 19 17 24 24 H 1.48502 * 109.46887 * 239.99695 * 21 19 17 25 25 C 1.32763 * 124.70938 * 179.75360 * 2 1 3 26 26 C 1.50698 * 123.46421 * 359.97312 * 25 2 1 27 27 H 1.08995 * 109.47070 * 270.24891 * 1 2 3 28 28 H 1.09001 * 109.46803 * 30.25075 * 1 2 3 29 29 H 1.08995 * 109.46829 * 150.24647 * 1 2 3 30 30 H 1.08002 * 124.59503 * 179.97438 * 4 3 2 31 31 H 0.97004 * 120.00627 * 0.02562 * 8 6 5 32 32 H 1.08996 * 109.47255 * 299.99583 * 9 8 6 33 33 H 1.08998 * 109.46830 * 60.00441 * 9 8 6 34 34 H 1.08996 * 109.46880 * 299.99897 * 10 9 8 35 35 H 1.08998 * 109.46935 * 60.00590 * 10 9 8 36 36 H 1.08999 * 109.47456 * 60.00086 * 12 11 10 37 37 H 1.09011 * 109.46727 * 179.97438 * 12 11 10 38 38 H 1.08997 * 109.47115 * 299.99509 * 12 11 10 39 39 H 1.09000 * 109.46808 * 289.99707 * 13 11 10 40 40 H 1.08990 * 109.47347 * 49.99802 * 13 11 10 41 41 H 0.97001 * 119.99907 * 0.02562 * 16 14 13 42 42 H 0.96997 * 119.99931 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.47215 * 270.03127 * 26 25 2 44 44 H 1.08995 * 109.46944 * 30.02462 * 26 25 2 45 45 H 1.09003 * 109.47387 * 150.02651 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.5065 1.4427 0.0000 4 6 3.9477 0.5328 -0.0024 5 6 3.6778 -0.8003 0.0034 6 6 4.7202 -1.8395 0.0084 7 8 4.4072 -3.0148 0.0140 8 7 6.0214 -1.4886 0.0067 9 6 7.0589 -2.5229 0.0122 10 6 8.4386 -1.8613 0.0083 11 7 9.4789 -2.8985 0.0132 12 6 9.4581 -3.6708 -1.2362 13 6 10.8053 -2.3124 0.2479 14 6 11.8052 -3.4136 0.4904 15 8 11.4479 -4.5725 0.4703 16 7 13.0965 -3.1106 0.7297 17 6 14.0060 -4.1122 0.9509 18 1 13.6879 -5.1442 0.9330 19 6 15.3372 -3.7998 1.1982 20 7 15.7244 -2.5442 1.2195 21 14 16.5766 -5.1647 1.4988 22 1 15.8925 -6.4804 1.4215 23 1 17.6439 -5.1000 0.4684 24 1 17.1786 -4.9986 2.8462 25 6 2.2630 -1.0914 0.0047 26 6 1.7028 -2.4903 0.0113 27 1 -0.3633 0.0045 1.0276 28 1 -0.3633 0.8877 -0.5177 29 1 -0.3633 -0.8922 -0.5100 30 1 4.9408 0.9572 -0.0036 31 1 6.2710 -0.5512 0.0026 32 1 6.9534 -3.1386 0.9054 33 1 6.9535 -3.1479 -0.8746 34 1 8.5438 -1.2459 -0.8851 35 1 8.5442 -1.2361 0.8948 36 1 9.6345 -3.0029 -2.0793 37 1 10.2385 -4.4314 -1.2062 38 1 8.4863 -4.1512 -1.3503 39 1 11.1066 -1.7340 -0.6255 40 1 10.7651 -1.6597 1.1198 41 1 13.3822 -2.1837 0.7462 42 1 16.6537 -2.3262 1.3918 43 1 1.5675 -2.8227 1.0406 44 1 0.7415 -2.4991 -0.5025 45 1 2.3939 -3.1610 -0.4993 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663189575.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:41 Heat of formation + Delta-G solvation = -63.532507 kcal Electronic energy + Delta-G solvation = -25779.904338 eV Core-core repulsion = 21922.992447 eV Total energy + Delta-G solvation = -3856.911891 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.11413 -40.36651 -38.67099 -38.00630 -36.04701 -35.59610 -33.44789 -33.26135 -30.71824 -30.22568 -29.10696 -27.18410 -26.49360 -25.73894 -24.57736 -22.37319 -21.43074 -20.95122 -19.85231 -19.55299 -18.51902 -18.05510 -17.66044 -17.02907 -16.92285 -16.56867 -16.27618 -15.97098 -15.66518 -15.46637 -15.13299 -15.08564 -14.95136 -14.52174 -14.32845 -13.94676 -13.78401 -13.62722 -13.49112 -13.44276 -13.05035 -13.01260 -12.90460 -12.79362 -12.58242 -12.56108 -12.55204 -12.39133 -12.15951 -12.09495 -11.75114 -11.46050 -10.92229 -10.29081 -10.20650 -9.98680 -9.60358 -9.25739 -9.24892 -8.46018 -5.94096 -0.23617 0.58858 0.92489 0.94535 1.36729 1.42163 1.56013 1.96404 2.07029 2.29442 2.30763 2.90399 3.21172 3.42558 3.68217 3.80881 3.95122 4.05018 4.12011 4.25050 4.33035 4.35546 4.43558 4.45538 4.52950 4.60348 4.63257 4.63341 4.70258 4.80146 4.83657 4.86213 4.93531 5.01104 5.10933 5.20253 5.32106 5.35379 5.42504 5.61532 5.84813 6.04601 6.15663 6.48627 6.62347 7.14766 7.17821 7.58240 8.14768 8.71561 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033591 B = 0.001604 C = 0.001552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.352243 B =17448.591703 C =18036.983113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.216 4.216 3 S 0.236 5.764 4 C -0.207 4.207 5 C -0.177 4.177 6 C 0.572 3.428 7 O -0.573 6.573 8 N -0.709 5.709 9 C 0.132 3.868 10 C 0.053 3.947 11 N -0.539 5.539 12 C 0.024 3.976 13 C 0.061 3.939 14 C 0.439 3.561 15 O -0.616 6.616 16 N -0.574 5.574 17 C -0.332 4.332 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.920 5.920 21 Si 0.991 3.009 22 H -0.275 1.275 23 H -0.271 1.271 24 H -0.271 1.271 25 C -0.087 4.087 26 C -0.095 4.095 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.197 0.803 31 H 0.414 0.586 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.036 0.964 37 H 0.056 0.944 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.115 0.885 41 H 0.397 0.603 42 H 0.277 0.723 43 H 0.065 0.935 44 H 0.082 0.918 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.462 15.927 -4.096 32.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.333 4.333 3 S 0.504 5.496 4 C -0.345 4.345 5 C -0.196 4.196 6 C 0.359 3.641 7 O -0.455 6.455 8 N -0.362 5.362 9 C 0.007 3.993 10 C -0.075 4.075 11 N -0.264 5.264 12 C -0.124 4.124 13 C -0.070 4.070 14 C 0.227 3.773 15 O -0.502 6.502 16 N -0.212 5.212 17 C -0.462 4.462 18 H 0.095 0.905 19 C -0.212 4.212 20 N -0.561 5.561 21 Si 0.815 3.185 22 H -0.200 1.200 23 H -0.196 1.196 24 H -0.196 1.196 25 C -0.097 4.097 26 C -0.154 4.154 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.214 0.786 31 H 0.251 0.749 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.133 0.867 41 H 0.231 0.769 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.101 0.899 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -29.114 15.672 -3.690 33.270 hybrid contribution 1.939 -1.126 -0.406 2.278 sum -27.176 14.546 -4.097 31.095 Atomic orbital electron populations 1.20457 0.85789 1.04187 1.03707 1.24524 1.01839 0.95786 1.11127 1.82840 0.92023 1.06494 1.68214 1.25962 1.06871 0.96762 1.04943 1.20023 0.93590 0.92861 1.13093 1.17971 0.82629 0.87941 0.75595 1.90747 1.82468 1.20546 1.51689 1.45585 1.04697 1.10982 1.74936 1.21110 0.85933 0.90297 1.01921 1.22244 0.89053 0.92862 1.03321 1.61318 1.03187 1.25043 1.36860 1.22470 1.02868 0.98235 0.88801 1.21737 0.87761 0.94182 1.03360 1.20833 0.83373 0.90780 0.82332 1.90480 1.79486 1.22972 1.57266 1.41920 1.06768 1.09494 1.63002 1.19681 0.89444 0.89776 1.47251 0.90479 1.25992 0.99044 0.99564 0.96568 1.69669 1.18807 1.18019 1.49598 0.84893 0.77597 0.77710 0.78273 1.19992 1.19593 1.19643 1.19844 0.90618 0.97228 1.01970 1.20564 1.01004 0.91458 1.02379 0.89798 0.89780 0.89952 0.78627 0.74857 0.92513 0.92266 0.91973 0.88250 0.94602 0.92491 0.90900 0.90867 0.86683 0.76941 0.91342 0.91624 0.89945 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.04 71.24 0.72 0.05 16 2 C -0.22 -2.93 6.44 24.51 0.16 -2.77 16 3 S 0.24 2.30 23.00 -56.49 -1.30 1.00 16 4 C -0.21 -2.53 10.38 67.30 0.70 -1.83 16 5 C -0.18 -3.45 5.98 -19.87 -0.12 -3.57 16 6 C 0.57 14.05 7.79 86.60 0.67 14.72 16 7 O -0.57 -18.83 14.21 -4.14 -0.06 -18.89 16 8 N -0.71 -13.52 5.52 -466.59 -2.58 -16.10 16 9 C 0.13 3.11 5.60 86.38 0.48 3.59 16 10 C 0.05 1.12 5.07 86.31 0.44 1.56 16 11 N -0.54 -16.92 4.50 -927.05 -4.17 -21.10 16 12 C 0.02 0.78 8.96 127.69 1.14 1.92 16 13 C 0.06 2.00 5.45 85.56 0.47 2.46 16 14 C 0.44 20.76 7.47 87.66 0.66 21.41 16 15 O -0.62 -34.22 13.91 -3.08 -0.04 -34.27 16 16 N -0.57 -29.23 5.29 -306.98 -1.62 -30.86 16 17 C -0.33 -18.88 9.68 84.04 0.81 -18.07 16 18 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 19 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 20 N -0.92 -49.30 13.05 21.66 0.28 -49.02 16 21 Si 0.99 43.12 29.55 68.60 2.03 45.15 16 22 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 23 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 24 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 25 C -0.09 -1.65 6.01 -19.46 -0.12 -1.76 16 26 C -0.10 -1.87 9.27 71.24 0.66 -1.21 16 27 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.08 0.61 6.66 -2.39 -0.02 0.60 16 30 H 0.20 1.12 7.01 -2.91 -0.02 1.10 16 31 H 0.41 4.74 6.97 -92.71 -0.65 4.10 16 32 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.06 1.56 6.55 -2.39 -0.02 1.54 16 34 H 0.06 1.05 8.12 -2.39 -0.02 1.03 16 35 H 0.10 1.74 7.93 -2.39 -0.02 1.72 16 36 H 0.04 0.98 8.14 -2.39 -0.02 0.97 16 37 H 0.06 2.33 5.83 -2.38 -0.01 2.31 16 38 H 0.07 2.16 6.47 -2.39 -0.02 2.15 16 39 H 0.07 2.09 8.12 -2.39 -0.02 2.07 16 40 H 0.12 3.22 7.93 -2.39 -0.02 3.20 16 41 H 0.40 18.99 7.90 -92.71 -0.73 18.26 16 42 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 43 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.08 1.18 6.64 -2.39 -0.02 1.17 16 45 H 0.06 1.62 6.02 -2.39 -0.01 1.61 16 Total: -1.00 -76.27 382.32 -0.66 -76.93 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: -0.33 Total: 30.82 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: 7.14 Total: 16.32 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -8.09 Total: -117.07 kcal Atomic # 8 Polarization: -53.05 SS G_CDS: -0.10 Total: -53.15 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -1.30 Total: 1.00 kcal Total: -76.27 -0.66 -76.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663189575.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.396 kcal (2) G-P(sol) polarization free energy of solvation -76.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds