Wall clock time and date at job start Sat Apr 11 2020 05:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.37476 * 122.44498 * 2 1 4 4 C 1.36647 * 113.29097 * 180.02562 * 3 2 1 5 5 C 1.46588 * 125.45349 * 180.02562 * 4 3 2 6 6 O 1.21700 * 120.00047 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99641 * 179.97438 * 5 4 3 8 8 C 1.46502 * 119.99691 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.46827 * 179.97438 * 8 7 5 10 10 N 1.46905 * 109.46770 * 179.97438 * 9 8 7 11 11 C 1.46903 * 110.99927 * 66.05248 * 10 9 8 12 12 C 1.46901 * 111.00143 * 189.99927 * 10 9 8 13 13 C 1.50698 * 109.47421 * 170.00140 * 12 10 9 14 14 O 1.21297 * 119.99762 * 0.02562 * 13 12 10 15 15 N 1.34776 * 120.00031 * 180.02562 * 13 12 10 16 16 C 1.37096 * 119.99706 * 180.02562 * 15 13 12 17 17 H 1.07999 * 120.00356 * 359.97438 * 16 15 13 18 18 C 1.38955 * 119.99676 * 179.97438 * 16 15 13 19 19 N 1.31411 * 120.00136 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99834 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47179 * 60.00190 * 20 18 16 22 22 H 1.48497 * 109.46984 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47285 * 300.00342 * 20 18 16 24 24 S 1.75825 * 109.08825 * 359.97438 * 4 3 2 25 25 C 1.33815 * 122.44997 * 180.02562 * 2 1 3 26 26 C 1.50694 * 124.52169 * 0.24390 * 25 2 1 27 27 H 1.09002 * 109.46863 * 269.97606 * 1 2 3 28 28 H 1.08996 * 109.47233 * 29.97958 * 1 2 3 29 29 H 1.09000 * 109.46765 * 149.97791 * 1 2 3 30 30 H 1.08003 * 123.35093 * 359.97438 * 3 2 1 31 31 H 0.96996 * 119.99934 * 359.97438 * 7 5 4 32 32 H 1.08998 * 109.47324 * 300.00258 * 8 7 5 33 33 H 1.09003 * 109.47055 * 59.99603 * 8 7 5 34 34 H 1.08992 * 109.47401 * 299.99979 * 9 8 7 35 35 H 1.08997 * 109.47167 * 60.00490 * 9 8 7 36 36 H 1.08995 * 109.47157 * 59.99527 * 11 10 9 37 37 H 1.08997 * 109.47476 * 179.97438 * 11 10 9 38 38 H 1.09002 * 109.47090 * 299.99681 * 11 10 9 39 39 H 1.09000 * 109.47554 * 290.00978 * 12 10 9 40 40 H 1.09012 * 109.46745 * 50.00284 * 12 10 9 41 41 H 0.96998 * 119.99855 * 359.97438 * 15 13 12 42 42 H 0.97000 * 120.00043 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.47026 * 179.71922 * 26 25 2 44 44 H 1.08999 * 109.47790 * 299.72306 * 26 25 2 45 45 H 1.09002 * 109.47337 * 59.72579 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2446 1.1602 0.0000 4 6 3.5937 0.9428 -0.0006 5 6 4.6231 1.9864 -0.0002 6 8 4.3001 3.1597 0.0012 7 7 5.9273 1.6464 -0.0003 8 6 6.9561 2.6894 -0.0004 9 6 8.3412 2.0394 0.0001 10 7 9.3728 3.0853 -0.0007 11 6 9.3461 3.8520 1.2521 12 6 10.7041 2.5115 -0.2383 13 6 11.6946 3.6219 -0.4765 14 8 11.3277 4.7778 -0.4503 15 7 12.9881 3.3308 -0.7185 16 6 13.8892 4.3411 -0.9347 17 1 13.5626 5.3702 -0.9114 18 6 15.2229 4.0409 -1.1837 19 7 15.6203 2.7887 -1.2125 20 14 16.4507 5.4174 -1.4789 21 1 16.4986 6.3021 -0.2871 22 1 17.7965 4.8374 -1.7185 23 1 16.0331 6.2073 -2.6651 24 16 3.8970 -0.7891 -0.0003 25 6 2.2251 -1.1292 -0.0005 26 6 1.6356 -2.5161 -0.0064 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8901 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 1.8019 2.1453 -0.0004 31 1 6.1847 0.7112 -0.0002 32 1 6.8454 3.3089 -0.8904 33 1 6.8455 3.3090 0.8895 34 1 8.4516 1.4203 0.8903 35 1 8.4520 1.4197 -0.8896 36 1 9.5284 3.1818 2.0922 37 1 10.1200 4.6191 1.2252 38 1 8.3704 4.3237 1.3687 39 1 11.0106 1.9316 0.6323 40 1 10.6689 1.8621 -1.1132 41 1 13.2815 2.4065 -0.7391 42 1 16.5513 2.5791 -1.3860 43 1 2.4393 -3.2524 -0.0106 44 1 1.0213 -2.6537 0.8834 45 1 1.0199 -2.6454 -0.8965 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663331567.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:43 Heat of formation + Delta-G solvation = -39.723975 kcal Electronic energy + Delta-G solvation = -25509.224579 eV Core-core repulsion = 21653.345103 eV Total energy + Delta-G solvation = -3855.879475 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.04189 -38.82634 -38.51289 -36.78147 -34.70178 -33.80728 -32.72011 -31.25121 -30.25927 -29.55495 -27.74040 -26.49183 -25.24066 -24.21647 -23.20972 -21.29565 -20.88307 -19.17419 -19.05446 -18.26929 -17.84910 -16.70856 -16.26445 -15.98187 -15.79752 -15.23111 -15.10276 -14.79641 -14.59657 -14.37401 -14.07599 -13.96259 -13.57957 -13.48615 -13.32130 -13.28434 -13.06994 -12.99409 -12.25191 -12.18730 -12.17220 -12.12130 -11.87062 -11.52066 -11.40688 -11.29418 -11.26571 -11.05886 -10.92152 -10.43400 -10.31550 -10.20727 -9.46561 -9.33731 -9.01005 -8.77972 -8.48133 -7.98799 -7.89174 -6.41320 -3.82053 0.12812 1.05376 1.45726 1.96061 2.79766 2.95987 3.20843 3.26478 3.31122 3.90362 4.03813 4.26092 4.29921 4.46110 4.62562 4.74827 4.83797 4.95030 4.97144 5.02913 5.11883 5.14525 5.21144 5.24918 5.37895 5.37953 5.47868 5.53701 5.62950 5.68775 5.81794 5.86736 5.90486 5.92995 6.00067 6.04393 6.15649 6.27633 6.55856 7.14539 7.22472 7.31685 7.55656 7.91453 8.06566 8.62238 9.18577 9.54578 10.06593 10.76331 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033167 B = 0.001603 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.009933 B =17465.557984 C =18077.553167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.125 4.125 3 C -0.046 4.046 4 C -0.266 4.266 5 C 0.591 3.409 6 O -0.526 6.526 7 N -0.725 5.725 8 C 0.122 3.878 9 C 0.044 3.956 10 N -0.514 5.514 11 C 0.017 3.983 12 C 0.047 3.953 13 C 0.443 3.557 14 O -0.576 6.576 15 N -0.564 5.564 16 C -0.299 4.299 17 H 0.103 0.897 18 C 0.023 3.977 19 N -0.902 5.902 20 Si 0.931 3.069 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.273 1.273 24 S 0.196 5.804 25 C -0.198 4.198 26 C -0.083 4.083 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.153 0.847 31 H 0.396 0.604 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.037 0.963 35 H 0.080 0.920 36 H 0.016 0.984 37 H 0.098 0.902 38 H 0.063 0.937 39 H 0.049 0.951 40 H 0.089 0.911 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.279 -15.091 3.877 31.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.138 4.138 3 C -0.080 4.080 4 C -0.386 4.386 5 C 0.376 3.624 6 O -0.404 6.404 7 N -0.377 5.377 8 C -0.001 4.001 9 C -0.085 4.085 10 N -0.239 5.239 11 C -0.130 4.130 12 C -0.084 4.084 13 C 0.229 3.771 14 O -0.460 6.460 15 N -0.200 5.200 16 C -0.429 4.429 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.544 5.544 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 S 0.465 5.535 25 C -0.318 4.318 26 C -0.142 4.142 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.171 0.829 31 H 0.230 0.770 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.055 0.945 35 H 0.098 0.902 36 H 0.034 0.966 37 H 0.117 0.883 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.107 0.893 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -26.278 -14.104 3.471 30.025 hybrid contribution -0.067 -0.205 0.473 0.520 sum -26.345 -14.309 3.944 30.238 Atomic orbital electron populations 1.20502 0.89332 1.02921 1.02396 1.18682 0.97952 0.91191 1.05951 1.20641 0.90953 0.99948 0.96419 1.24507 0.98024 0.96906 1.19176 1.16889 0.81509 0.87406 0.76563 1.90857 1.81577 1.18165 1.49767 1.45799 1.05605 1.10429 1.75817 1.21396 0.85131 0.89699 1.03848 1.22256 0.91170 0.93819 1.01292 1.61446 1.02944 1.23142 1.36323 1.22638 1.03851 0.98742 0.87800 1.21873 0.88827 0.96502 1.01228 1.19698 0.83102 0.89753 0.84577 1.90495 1.78405 1.20925 1.56190 1.41849 1.06211 1.09796 1.62194 1.19660 0.88108 0.89902 1.45231 0.87931 1.25254 0.97958 0.97312 0.97371 1.69602 1.17912 1.17259 1.49603 0.85916 0.78829 0.80337 0.79123 1.19932 1.21004 1.19879 1.82943 1.03575 0.98251 1.68701 1.24036 0.98298 1.00380 1.09049 1.20370 1.00923 0.89570 1.03289 0.91132 0.91258 0.91451 0.82923 0.77014 0.89855 0.90809 0.94473 0.90192 0.96589 0.88316 0.91813 0.93319 0.89297 0.77504 0.91845 0.91252 0.90249 0.90197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.47 9.84 36.01 0.35 -0.12 16 2 C -0.13 -0.95 5.78 -106.45 -0.62 -1.57 16 3 C -0.05 -0.44 9.80 -40.43 -0.40 -0.84 16 4 C -0.27 -2.73 6.45 -36.79 -0.24 -2.97 16 5 C 0.59 7.49 7.78 -12.89 -0.10 7.39 16 6 O -0.53 -8.63 16.84 5.19 0.09 -8.54 16 7 N -0.72 -7.79 5.55 -61.65 -0.34 -8.13 16 8 C 0.12 1.52 5.60 -4.04 -0.02 1.50 16 9 C 0.04 0.53 5.07 -3.82 -0.02 0.51 16 10 N -0.51 -8.45 4.50 -244.37 -1.10 -9.55 16 11 C 0.02 0.28 8.96 60.07 0.54 0.82 16 12 C 0.05 0.82 5.45 -4.98 -0.03 0.79 16 13 C 0.44 10.39 7.47 -10.99 -0.08 10.31 16 14 O -0.58 -15.47 13.91 5.54 0.08 -15.40 16 15 N -0.56 -14.19 5.29 -10.96 -0.06 -14.24 16 16 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 17 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 18 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 19 N -0.90 -24.42 13.05 55.50 0.72 -23.69 16 20 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 S 0.20 1.43 22.08 -107.50 -2.37 -0.95 16 25 C -0.20 -1.37 6.28 -35.86 -0.23 -1.59 16 26 C -0.08 -0.34 9.38 36.00 0.34 -0.01 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.33 8.13 -51.93 -0.42 -0.09 16 29 H 0.07 0.26 7.26 -51.93 -0.38 -0.11 16 30 H 0.15 1.43 8.06 -52.48 -0.42 1.01 16 31 H 0.40 3.22 7.59 -40.82 -0.31 2.91 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.07 0.98 6.55 -51.93 -0.34 0.64 16 34 H 0.04 0.40 8.12 -51.93 -0.42 -0.02 16 35 H 0.08 0.87 7.93 -51.93 -0.41 0.46 16 36 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.10 1.96 5.82 -51.93 -0.30 1.66 16 38 H 0.06 0.94 6.47 -51.93 -0.34 0.60 16 39 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 40 H 0.09 1.38 7.93 -51.92 -0.41 0.97 16 41 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 42 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.07 0.24 8.11 -51.93 -0.42 -0.18 16 44 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.08 0.26 7.88 -51.93 -0.41 -0.15 16 LS Contribution 389.04 15.07 5.86 5.86 Total: -1.00 -33.67 389.04 -9.41 -43.08 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -6.53 Total: 9.26 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -0.74 Total: 6.27 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -0.78 Total: -55.62 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: 0.16 Total: -23.94 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.37 Total: -0.95 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.67 -9.41 -43.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663331567.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.361 kcal (2) G-P(sol) polarization free energy of solvation -33.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds