Wall clock time and date at job start Sat Apr 11 2020 05:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.37476 * 122.44498 * 2 1 4 4 C 1.36647 * 113.29097 * 180.02562 * 3 2 1 5 5 C 1.46588 * 125.45349 * 180.02562 * 4 3 2 6 6 O 1.21700 * 120.00047 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99641 * 179.97438 * 5 4 3 8 8 C 1.46502 * 119.99691 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.46827 * 179.97438 * 8 7 5 10 10 N 1.46905 * 109.46770 * 179.97438 * 9 8 7 11 11 C 1.46903 * 110.99927 * 66.05248 * 10 9 8 12 12 C 1.46901 * 111.00143 * 189.99927 * 10 9 8 13 13 C 1.50698 * 109.47421 * 170.00140 * 12 10 9 14 14 O 1.21297 * 119.99762 * 0.02562 * 13 12 10 15 15 N 1.34776 * 120.00031 * 180.02562 * 13 12 10 16 16 C 1.37096 * 119.99706 * 180.02562 * 15 13 12 17 17 H 1.07999 * 120.00356 * 359.97438 * 16 15 13 18 18 C 1.38955 * 119.99676 * 179.97438 * 16 15 13 19 19 N 1.31411 * 120.00136 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99834 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47179 * 60.00190 * 20 18 16 22 22 H 1.48497 * 109.46984 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47285 * 300.00342 * 20 18 16 24 24 S 1.75825 * 109.08825 * 359.97438 * 4 3 2 25 25 C 1.33815 * 122.44997 * 180.02562 * 2 1 3 26 26 C 1.50694 * 124.52169 * 0.24390 * 25 2 1 27 27 H 1.09002 * 109.46863 * 269.97606 * 1 2 3 28 28 H 1.08996 * 109.47233 * 29.97958 * 1 2 3 29 29 H 1.09000 * 109.46765 * 149.97791 * 1 2 3 30 30 H 1.08003 * 123.35093 * 359.97438 * 3 2 1 31 31 H 0.96996 * 119.99934 * 359.97438 * 7 5 4 32 32 H 1.08998 * 109.47324 * 300.00258 * 8 7 5 33 33 H 1.09003 * 109.47055 * 59.99603 * 8 7 5 34 34 H 1.08992 * 109.47401 * 299.99979 * 9 8 7 35 35 H 1.08997 * 109.47167 * 60.00490 * 9 8 7 36 36 H 1.08995 * 109.47157 * 59.99527 * 11 10 9 37 37 H 1.08997 * 109.47476 * 179.97438 * 11 10 9 38 38 H 1.09002 * 109.47090 * 299.99681 * 11 10 9 39 39 H 1.09000 * 109.47554 * 290.00978 * 12 10 9 40 40 H 1.09012 * 109.46745 * 50.00284 * 12 10 9 41 41 H 0.96998 * 119.99855 * 359.97438 * 15 13 12 42 42 H 0.97000 * 120.00043 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.47026 * 179.71922 * 26 25 2 44 44 H 1.08999 * 109.47790 * 299.72306 * 26 25 2 45 45 H 1.09002 * 109.47337 * 59.72579 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2446 1.1602 0.0000 4 6 3.5937 0.9428 -0.0006 5 6 4.6231 1.9864 -0.0002 6 8 4.3001 3.1597 0.0012 7 7 5.9273 1.6464 -0.0003 8 6 6.9561 2.6894 -0.0004 9 6 8.3412 2.0394 0.0001 10 7 9.3728 3.0853 -0.0007 11 6 9.3461 3.8520 1.2521 12 6 10.7041 2.5115 -0.2383 13 6 11.6946 3.6219 -0.4765 14 8 11.3277 4.7778 -0.4503 15 7 12.9881 3.3308 -0.7185 16 6 13.8892 4.3411 -0.9347 17 1 13.5626 5.3702 -0.9114 18 6 15.2229 4.0409 -1.1837 19 7 15.6203 2.7887 -1.2125 20 14 16.4507 5.4174 -1.4789 21 1 16.4986 6.3021 -0.2871 22 1 17.7965 4.8374 -1.7185 23 1 16.0331 6.2073 -2.6651 24 16 3.8970 -0.7891 -0.0003 25 6 2.2251 -1.1292 -0.0005 26 6 1.6356 -2.5161 -0.0064 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8901 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 1.8019 2.1453 -0.0004 31 1 6.1847 0.7112 -0.0002 32 1 6.8454 3.3089 -0.8904 33 1 6.8455 3.3090 0.8895 34 1 8.4516 1.4203 0.8903 35 1 8.4520 1.4197 -0.8896 36 1 9.5284 3.1818 2.0922 37 1 10.1200 4.6191 1.2252 38 1 8.3704 4.3237 1.3687 39 1 11.0106 1.9316 0.6323 40 1 10.6689 1.8621 -1.1132 41 1 13.2815 2.4065 -0.7391 42 1 16.5513 2.5791 -1.3860 43 1 2.4393 -3.2524 -0.0106 44 1 1.0213 -2.6537 0.8834 45 1 1.0199 -2.6454 -0.8965 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663331567.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:43 Heat of formation + Delta-G solvation = -64.560375 kcal Electronic energy + Delta-G solvation = -25510.301566 eV Core-core repulsion = 21653.345103 eV Total energy + Delta-G solvation = -3856.956463 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.98734 -40.35228 -39.33403 -38.16658 -36.04754 -35.57180 -33.32629 -33.25323 -31.02274 -30.35456 -29.13847 -27.36330 -26.70975 -25.37776 -24.14412 -22.40724 -21.77911 -20.96558 -19.84790 -19.72240 -19.01404 -17.78272 -17.53409 -16.99730 -16.93293 -16.55470 -16.36230 -16.16361 -15.67597 -15.56266 -15.25188 -15.03919 -14.91605 -14.58106 -14.40504 -14.07800 -13.77916 -13.61112 -13.46228 -13.43077 -13.03715 -12.99055 -12.76137 -12.71659 -12.63394 -12.58184 -12.54687 -12.40976 -12.18708 -12.10149 -11.84558 -11.44569 -11.33697 -10.33606 -10.27906 -9.98353 -9.63878 -9.33908 -9.25510 -8.45065 -5.93330 -0.55333 0.43985 0.85399 1.29097 1.40486 1.42385 1.52910 1.85125 2.07713 2.07891 2.30785 2.87522 3.21948 3.42598 3.66840 3.81728 3.87677 4.02277 4.15066 4.24333 4.25023 4.35246 4.43586 4.53333 4.57662 4.62097 4.63011 4.69812 4.72735 4.79846 4.87620 4.88435 4.94265 5.04907 5.11598 5.18674 5.20571 5.37693 5.42523 5.52447 5.84465 6.04419 6.14458 6.32189 6.63006 7.00142 7.15098 7.58782 8.15334 8.71983 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033167 B = 0.001603 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.009933 B =17465.557984 C =18077.553167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.141 4.141 3 C -0.052 4.052 4 C -0.303 4.303 5 C 0.588 3.412 6 O -0.576 6.576 7 N -0.711 5.711 8 C 0.130 3.870 9 C 0.052 3.948 10 N -0.538 5.538 11 C 0.023 3.977 12 C 0.060 3.940 13 C 0.439 3.561 14 O -0.616 6.616 15 N -0.573 5.573 16 C -0.334 4.334 17 H 0.078 0.922 18 C -0.011 4.011 19 N -0.919 5.919 20 Si 0.991 3.009 21 H -0.273 1.273 22 H -0.270 1.270 23 H -0.274 1.274 24 S 0.238 5.762 25 C -0.191 4.191 26 C -0.086 4.086 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.142 0.858 31 H 0.411 0.589 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.036 0.964 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.115 0.885 41 H 0.397 0.603 42 H 0.277 0.723 43 H 0.079 0.921 44 H 0.092 0.908 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.044 -18.181 4.009 33.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.153 4.153 3 C -0.086 4.086 4 C -0.423 4.423 5 C 0.376 3.624 6 O -0.457 6.457 7 N -0.363 5.363 8 C 0.006 3.994 9 C -0.076 4.076 10 N -0.263 5.263 11 C -0.125 4.125 12 C -0.071 4.071 13 C 0.227 3.773 14 O -0.502 6.502 15 N -0.211 5.211 16 C -0.464 4.464 17 H 0.096 0.904 18 C -0.211 4.211 19 N -0.560 5.560 20 Si 0.815 3.185 21 H -0.198 1.198 22 H -0.194 1.194 23 H -0.199 1.199 24 S 0.508 5.492 25 C -0.311 4.311 26 C -0.144 4.144 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.160 0.840 31 H 0.248 0.752 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.118 0.882 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.133 0.867 41 H 0.231 0.769 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.111 0.889 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -27.035 -17.263 3.608 32.279 hybrid contribution 0.059 0.682 0.442 0.815 sum -26.976 -16.581 4.051 31.923 Atomic orbital electron populations 1.20553 0.87652 1.03705 1.03101 1.18864 0.99238 0.90612 1.06541 1.20795 0.91185 1.00487 0.96135 1.24366 0.97617 0.98457 1.21889 1.17274 0.82274 0.87339 0.75538 1.90820 1.82369 1.20324 1.52229 1.45605 1.04781 1.10901 1.75011 1.21180 0.85987 0.89949 1.02291 1.22249 0.89057 0.92836 1.03460 1.61326 1.03301 1.25057 1.36641 1.22481 1.02897 0.98319 0.88753 1.21745 0.87707 0.94208 1.03418 1.20817 0.83322 0.90829 0.82363 1.90478 1.79120 1.23338 1.57283 1.41906 1.06768 1.09461 1.62978 1.19615 0.89547 0.89680 1.47511 0.90449 1.25990 0.98949 0.99663 0.96513 1.69657 1.18556 1.18409 1.49401 0.85018 0.77032 0.77672 0.78781 1.19817 1.19433 1.19889 1.82692 1.03756 0.95094 1.67699 1.24530 0.98202 1.01611 1.06784 1.20537 1.01585 0.87755 1.04536 0.90425 0.91366 0.89823 0.83982 0.75218 0.92118 0.91909 0.91893 0.88189 0.94547 0.92410 0.90881 0.90817 0.86661 0.76934 0.91327 0.90189 0.88912 0.88851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.78 9.84 71.24 0.70 -0.08 16 2 C -0.14 -1.95 5.78 -21.05 -0.12 -2.07 16 3 C -0.05 -0.99 9.80 21.72 0.21 -0.78 16 4 C -0.30 -6.15 6.45 24.08 0.16 -6.00 16 5 C 0.59 15.18 7.78 86.42 0.67 15.85 16 6 O -0.58 -19.92 16.84 -4.35 -0.07 -20.00 16 7 N -0.71 -14.68 5.55 -467.17 -2.59 -17.27 16 8 C 0.13 3.16 5.60 86.38 0.48 3.64 16 9 C 0.05 1.13 5.07 86.30 0.44 1.57 16 10 N -0.54 -17.02 4.50 -927.05 -4.17 -21.20 16 11 C 0.02 0.76 8.96 127.69 1.14 1.90 16 12 C 0.06 2.00 5.45 85.56 0.47 2.46 16 13 C 0.44 20.78 7.47 87.66 0.66 21.43 16 14 O -0.62 -34.22 13.91 -3.08 -0.04 -34.26 16 15 N -0.57 -29.23 5.29 -306.98 -1.62 -30.85 16 16 C -0.33 -19.00 9.68 84.04 0.81 -18.18 16 17 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 18 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 19 N -0.92 -49.30 13.05 21.66 0.28 -49.02 16 20 Si 0.99 43.11 29.55 68.60 2.03 45.14 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 22 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 S 0.24 2.96 22.08 -56.49 -1.25 1.71 16 25 C -0.19 -2.17 6.28 24.68 0.15 -2.01 16 26 C -0.09 -0.41 9.38 71.23 0.67 0.26 16 27 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.07 0.59 8.13 -2.39 -0.02 0.57 16 29 H 0.08 0.43 7.26 -2.39 -0.02 0.41 16 30 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 31 H 0.41 5.83 7.59 -92.71 -0.70 5.13 16 32 H 0.06 1.76 8.14 -2.39 -0.02 1.75 16 33 H 0.06 1.67 6.55 -2.39 -0.02 1.66 16 34 H 0.06 1.11 8.12 -2.39 -0.02 1.09 16 35 H 0.10 1.82 7.93 -2.39 -0.02 1.80 16 36 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 2.36 5.82 -2.39 -0.01 2.35 16 38 H 0.07 2.17 6.47 -2.39 -0.02 2.16 16 39 H 0.07 2.12 8.12 -2.39 -0.02 2.10 16 40 H 0.12 3.25 7.93 -2.38 -0.02 3.23 16 41 H 0.40 19.01 7.90 -92.71 -0.73 18.28 16 42 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 43 H 0.08 0.24 8.11 -2.39 -0.02 0.22 16 44 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 45 H 0.09 0.26 7.88 -2.39 -0.02 0.24 16 Total: -1.00 -75.97 389.04 -0.93 -76.91 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: -0.40 Total: 30.98 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: 6.91 Total: 17.86 kcal Atomic # 7 Polarization: -110.23 SS G_CDS: -8.11 Total: -118.34 kcal Atomic # 8 Polarization: -54.14 SS G_CDS: -0.12 Total: -54.26 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -1.25 Total: 1.71 kcal Total: -75.97 -0.93 -76.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663331567.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.349 kcal (2) G-P(sol) polarization free energy of solvation -75.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds