Wall clock time and date at job start Sat Apr 11 2020 05:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34332 * 126.44290 * 2 1 4 4 N 1.34480 * 107.66453 * 180.02562 * 3 2 1 5 5 C 1.30250 * 108.70325 * 0.02562 * 4 3 2 6 6 C 1.50703 * 125.61814 * 179.97438 * 5 4 3 7 7 N 1.46901 * 109.47233 * 90.02113 * 6 5 4 8 8 C 1.48553 * 111.00061 * 279.99070 * 7 6 5 9 9 C 1.54386 * 104.59362 * 200.95854 * 8 7 6 10 10 C 1.54259 * 105.05855 * 23.85583 * 9 8 7 11 11 C 1.48560 * 110.99879 * 164.56765 * 7 6 5 12 12 H 1.09007 * 110.50830 * 40.21888 * 11 7 6 13 13 C 1.52993 * 110.41767 * 277.82207 * 11 7 6 14 14 N 1.46503 * 109.47521 * 179.69609 * 13 11 7 15 15 C 1.34776 * 119.99837 * 174.98473 * 14 13 11 16 16 O 1.21278 * 120.00361 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99427 * 180.02562 * 15 14 13 18 18 S 1.81001 * 109.46618 * 179.97438 * 17 15 14 19 19 C 1.76212 * 99.99833 * 179.97438 * 18 17 15 20 20 H 1.07996 * 119.99599 * 359.97438 * 19 18 17 21 21 C 1.38794 * 119.99993 * 179.97438 * 19 18 17 22 22 N 1.31628 * 120.00039 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99967 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47101 * 60.00361 * 23 21 19 25 25 H 1.48506 * 109.47308 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47483 * 300.00415 * 23 21 19 27 27 O 1.33968 * 108.76181 * 0.22798 * 5 4 3 28 28 H 1.08992 * 109.47203 * 89.97323 * 1 2 3 29 29 H 1.08997 * 109.47152 * 209.97681 * 1 2 3 30 30 H 1.08997 * 109.46801 * 329.97312 * 1 2 3 31 31 H 1.08001 * 126.16455 * 0.06100 * 3 2 1 32 32 H 1.09000 * 109.47036 * 330.01843 * 6 5 4 33 33 H 1.09000 * 109.46978 * 210.02320 * 6 5 4 34 34 H 1.09002 * 110.41502 * 82.18445 * 8 7 6 35 35 H 1.08998 * 110.51186 * 319.78978 * 8 7 6 36 36 H 1.08993 * 110.32533 * 264.95832 * 9 8 7 37 37 H 1.09000 * 110.40678 * 142.79208 * 9 8 7 38 38 H 1.09002 * 110.32113 * 241.10318 * 10 9 8 39 39 H 1.08999 * 110.32203 * 118.89953 * 10 9 8 40 40 H 1.09009 * 109.47262 * 59.69359 * 13 11 7 41 41 H 1.08997 * 109.46875 * 299.69981 * 13 11 7 42 42 H 0.97000 * 119.99724 * 354.98522 * 14 13 11 43 43 H 1.08996 * 109.47218 * 59.99711 * 17 15 14 44 44 H 1.08995 * 109.46870 * 299.99527 * 17 15 14 45 45 H 0.97001 * 120.00001 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 -0.0006 5 6 3.5765 -0.6548 -0.0015 6 6 4.8005 -1.5340 -0.0029 7 7 5.1988 -1.8211 1.3816 8 6 5.9558 -0.6836 1.9646 9 6 6.7434 -1.3020 3.1397 10 6 6.8720 -2.7994 2.7921 11 6 6.1513 -2.9599 1.4363 12 1 6.8667 -2.8991 0.6161 13 6 5.3966 -4.2898 1.3873 14 7 6.3547 -5.3971 1.4351 15 6 5.9124 -6.6683 1.5060 16 8 4.7213 -6.8955 1.5308 17 6 6.8980 -7.8072 1.5558 18 16 6.0016 -9.3770 1.6476 19 6 7.3576 -10.5014 1.6920 20 1 8.3703 -10.1275 1.6611 21 6 7.1241 -11.8676 1.7666 22 7 5.8898 -12.3232 1.8038 23 14 8.5615 -13.0596 1.8129 24 1 9.4033 -12.7740 3.0025 25 1 8.0485 -14.4510 1.8914 26 1 9.3756 -12.9015 0.5810 27 8 2.3075 -1.0840 -0.0065 28 1 -0.3633 0.0005 -1.0276 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8897 0.5142 31 1 1.9822 2.1113 0.0009 32 1 5.6145 -1.0227 -0.5166 33 1 4.5760 -2.4683 -0.5176 34 1 5.2710 0.0828 2.3275 35 1 6.6402 -0.2628 1.2279 36 1 6.1933 -1.1757 4.0721 37 1 7.7300 -0.8454 3.2180 38 1 6.3850 -3.4080 3.5540 39 1 7.9218 -3.0774 2.6982 40 1 4.8208 -4.3471 0.4635 41 1 4.7217 -4.3562 2.2407 42 1 7.3073 -5.2154 1.4157 43 1 7.5332 -7.6999 2.4350 44 1 7.5152 -7.7929 0.6576 45 1 5.7266 -13.2780 1.8555 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663470441.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:48 Heat of formation + Delta-G solvation = -10.231768 kcal Electronic energy + Delta-G solvation = -26105.160469 eV Core-core repulsion = 22250.559871 eV Total energy + Delta-G solvation = -3854.600597 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.57612 -39.92859 -38.75570 -35.05094 -34.60778 -33.68928 -32.42350 -32.10647 -30.73770 -28.69053 -28.18585 -25.63178 -25.42903 -24.65945 -22.51718 -21.78721 -21.04566 -20.64629 -20.23833 -17.87632 -17.37497 -17.13584 -16.51315 -16.35459 -15.88462 -15.28359 -15.20459 -14.96932 -14.79982 -14.71048 -14.36177 -13.89810 -13.75211 -13.64565 -13.48558 -13.12911 -13.01970 -12.72840 -12.60558 -12.51520 -12.22843 -11.86731 -11.73382 -11.61790 -11.52573 -11.17414 -11.04076 -11.03402 -10.82367 -10.81723 -10.76140 -9.82098 -9.41137 -9.13933 -9.05872 -8.91054 -8.87575 -8.23096 -6.49305 -6.20893 -3.91562 1.12892 2.27673 2.39671 2.96985 3.11570 3.23735 3.25751 3.29266 3.47840 3.72978 3.93096 4.19180 4.21035 4.30050 4.43503 4.57626 4.68247 4.69947 4.81146 4.83508 4.96435 5.00985 5.06871 5.13145 5.14094 5.18839 5.22405 5.31446 5.46799 5.56174 5.60247 5.63152 5.68605 5.75995 5.79695 5.85469 5.90538 5.90672 6.00849 6.14153 6.36274 6.40100 6.63947 7.45730 7.59686 7.70199 8.35529 8.62548 9.24157 10.86443 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019135 B = 0.001943 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.905947 B =14409.860835 C =15536.873466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.045 4.045 3 C -0.047 4.047 4 N -0.479 5.479 5 C 0.204 3.796 6 C 0.136 3.864 7 N -0.501 5.501 8 C 0.038 3.962 9 C -0.124 4.124 10 C -0.120 4.120 11 C 0.055 3.945 12 H 0.065 0.935 13 C 0.135 3.865 14 N -0.738 5.738 15 C 0.532 3.468 16 O -0.515 6.515 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 O -0.191 6.191 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.182 0.818 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.079 0.921 42 H 0.397 0.603 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.002 29.271 -2.418 29.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.099 4.099 3 C -0.186 4.186 4 N -0.209 5.209 5 C -0.003 4.003 6 C 0.007 3.993 7 N -0.227 5.227 8 C -0.090 4.090 9 C -0.162 4.162 10 C -0.159 4.159 11 C -0.053 4.053 12 H 0.083 0.917 13 C 0.010 3.990 14 N -0.393 5.393 15 C 0.318 3.682 16 O -0.389 6.389 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.200 1.200 27 O -0.077 6.077 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.199 0.801 32 H 0.104 0.896 33 H 0.124 0.876 34 H 0.102 0.898 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.230 0.770 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.099 28.928 -2.089 29.291 hybrid contribution 2.759 -0.451 -0.532 2.846 sum -1.340 28.477 -2.621 28.628 Atomic orbital electron populations 1.20290 0.84005 1.04544 1.03826 1.23530 0.95177 0.84623 1.06527 1.23032 0.87807 1.00266 1.07506 1.70400 1.23206 1.09144 1.18104 1.25830 0.84188 0.89820 1.00508 1.20545 0.89276 0.97816 0.91660 1.65066 1.36956 1.04648 1.15999 1.23167 0.95986 0.93317 0.96498 1.22304 1.00121 0.95214 0.98601 1.22384 1.00459 0.96825 0.96192 1.22843 0.92926 0.90973 0.98594 0.91710 1.21101 0.91566 0.83288 1.03041 1.45903 1.09789 1.05650 1.77976 1.20284 0.89763 0.82905 0.75210 1.90715 1.16892 1.83934 1.47369 1.23525 1.01944 0.99988 1.04899 1.85420 1.10419 0.91086 1.96414 1.22827 0.93524 0.93211 1.58864 0.90979 1.24993 0.96589 0.97464 0.94564 1.70008 1.19010 1.14606 1.46647 0.86225 0.81273 0.79218 0.78778 1.19945 1.20820 1.19959 1.84432 1.17724 1.36394 1.69139 0.89773 0.90080 0.88987 0.80117 0.89612 0.87555 0.89774 0.93035 0.90824 0.91017 0.90101 0.90709 0.91894 0.90300 0.76954 0.89207 0.89251 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.43 36.01 0.38 0.01 16 2 C -0.04 -0.42 7.39 -35.68 -0.26 -0.68 16 3 C -0.05 -0.44 11.80 -17.77 -0.21 -0.65 16 4 N -0.48 -5.39 11.29 -11.10 -0.13 -5.52 16 5 C 0.20 2.24 7.68 -12.95 -0.10 2.14 16 6 C 0.14 1.20 5.45 -4.97 -0.03 1.17 16 7 N -0.50 -4.60 4.97 -223.57 -1.11 -5.72 16 8 C 0.04 0.30 6.26 -2.18 -0.01 0.29 16 9 C -0.12 -0.88 7.00 -25.35 -0.18 -1.06 16 10 C -0.12 -0.93 6.23 -25.35 -0.16 -1.09 16 11 C 0.05 0.46 2.32 -66.07 -0.15 0.31 16 12 H 0.06 0.46 8.00 -51.92 -0.42 0.05 16 13 C 0.13 1.58 5.22 -4.04 -0.02 1.55 16 14 N -0.74 -9.42 5.35 -60.29 -0.32 -9.75 16 15 C 0.53 9.79 7.85 -10.99 -0.09 9.71 16 16 O -0.52 -11.75 15.86 5.56 0.09 -11.67 16 17 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 18 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 19 C -0.54 -15.22 9.50 30.94 0.29 -14.93 16 20 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 23 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 O -0.19 -2.25 10.78 5.36 0.06 -2.19 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.18 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.09 0.62 7.65 -51.93 -0.40 0.23 16 33 H 0.11 0.87 7.07 -51.93 -0.37 0.51 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.37 7.68 -51.93 -0.40 -0.02 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.74 7.82 -51.93 -0.41 0.33 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.79 7.26 -51.92 -0.38 0.41 16 41 H 0.08 1.09 8.08 -51.93 -0.42 0.67 16 42 H 0.40 3.81 8.36 -40.82 -0.34 3.47 16 43 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 44 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 45 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 391.05 15.07 5.89 5.89 Total: -1.00 -36.46 391.05 -9.33 -45.79 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.89 Total: 0.14 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -0.41 Total: -4.04 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: -0.83 Total: -46.42 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.15 Total: -13.85 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.46 -9.33 -45.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663470441.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.559 kcal (2) G-P(sol) polarization free energy of solvation -36.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds