Wall clock time and date at job start Sat Apr 11 2020 05:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35451 * 126.77949 * 2 1 4 4 C 1.41379 * 103.98604 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.80371 * 180.02562 * 4 3 2 6 6 N 1.46906 * 109.47317 * 94.99577 * 5 4 3 7 7 C 1.47897 * 110.99555 * 69.87469 * 6 5 4 8 8 C 1.54000 * 107.05672 * 145.84575 * 7 6 5 9 9 C 1.54598 * 105.22213 * 358.72428 * 8 7 6 10 10 H 1.09003 * 110.72246 * 96.45403 * 9 8 7 11 11 C 1.53005 * 110.72373 * 219.73164 * 9 8 7 12 12 N 1.46502 * 109.46933 * 293.55216 * 11 9 8 13 13 C 1.34779 * 119.99570 * 180.02562 * 12 11 9 14 14 O 1.21280 * 120.00270 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00019 * 179.97438 * 13 12 11 16 16 S 1.80998 * 109.47334 * 179.97438 * 15 13 12 17 17 C 1.76194 * 100.00149 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00128 * 359.97438 * 17 16 15 19 19 C 1.38802 * 119.99994 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00109 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99921 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47101 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46824 * 120.00367 * 21 19 17 24 24 H 1.48493 * 109.47393 * 240.00721 * 21 19 17 25 25 C 1.48533 * 111.00245 * 187.27419 * 6 5 4 26 26 N 1.30179 * 106.39842 * 0.25862 * 4 3 2 27 27 O 1.20928 * 111.60059 * 359.53795 * 26 4 3 28 28 H 1.09006 * 109.46602 * 90.00271 * 1 2 3 29 29 H 1.09000 * 109.47351 * 210.00157 * 1 2 3 30 30 H 1.08996 * 109.46703 * 330.00733 * 1 2 3 31 31 H 1.08001 * 128.00632 * 0.02562 * 3 2 1 32 32 H 1.09004 * 109.46704 * 335.00004 * 5 4 3 33 33 H 1.08991 * 109.47304 * 214.99744 * 5 4 3 34 34 H 1.09000 * 109.91881 * 26.49521 * 7 6 5 35 35 H 1.09002 * 110.08496 * 265.28456 * 7 6 5 36 36 H 1.09002 * 110.31026 * 117.69182 * 8 7 6 37 37 H 1.09000 * 110.30915 * 239.76211 * 8 7 6 38 38 H 1.09000 * 109.46934 * 53.54799 * 11 9 8 39 39 H 1.08992 * 109.47087 * 173.54757 * 11 9 8 40 40 H 0.96998 * 120.00409 * 359.97438 * 12 11 9 41 41 H 1.09000 * 109.46823 * 299.99660 * 15 13 12 42 42 H 1.08999 * 109.46974 * 59.99571 * 15 13 12 43 43 H 0.97002 * 120.00268 * 179.97438 * 20 19 17 44 44 H 1.09003 * 110.66452 * 318.71648 * 25 6 5 45 45 H 1.08995 * 110.66642 * 81.67547 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5372 0.0006 5 6 4.9211 1.2998 0.0014 6 7 5.4038 1.4434 1.3815 7 6 5.8522 0.1427 1.9241 8 6 7.0394 0.4297 2.8621 9 6 7.2531 1.9591 2.7902 10 1 6.7519 2.4580 3.6197 11 6 8.7453 2.2972 2.7751 12 7 9.3428 1.9270 4.0604 13 6 10.6567 2.1350 4.2775 14 8 11.3443 2.6282 3.4087 15 6 11.2713 1.7548 5.5999 16 16 13.0365 2.1546 5.5819 17 6 13.4871 1.6230 7.2002 18 1 12.7411 1.2009 7.8572 19 6 14.8009 1.7466 7.6306 20 7 15.7101 2.2615 6.8301 21 14 15.2785 1.1837 9.3466 22 1 14.0816 0.6463 10.0423 23 1 16.3123 0.1221 9.2494 24 1 15.8212 2.3346 10.1120 25 6 6.5887 2.3371 1.4407 26 7 3.4764 -0.7565 -0.0047 27 8 2.3095 -1.0737 0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3632 0.8900 0.5137 31 1 2.0346 2.1270 0.0004 32 1 4.7633 2.2871 -0.4329 33 1 5.6608 0.7578 -0.5876 34 1 6.1708 -0.5090 1.1106 35 1 5.0434 -0.3288 2.4824 36 1 6.7974 0.1289 3.8815 37 1 7.9305 -0.0936 2.5154 38 1 9.2351 1.7437 1.9739 39 1 8.8738 3.3667 2.6092 40 1 8.7929 1.5329 4.7554 41 1 10.7812 2.3082 6.4008 42 1 11.1431 0.6852 5.7660 43 1 16.6282 2.3483 7.1310 44 1 7.2652 2.1346 0.6103 45 1 6.2821 3.3831 1.4391 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663561649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:52 Heat of formation + Delta-G solvation = 23.304234 kcal Electronic energy + Delta-G solvation = -25508.777109 eV Core-core repulsion = 21655.630741 eV Total energy + Delta-G solvation = -3853.146367 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.28759 -39.84740 -38.81903 -35.67695 -34.40363 -33.73492 -32.42602 -31.90222 -30.08577 -28.99010 -28.25282 -27.03153 -25.50969 -24.49425 -23.50470 -21.75003 -20.85434 -20.21620 -20.03039 -18.03765 -17.83910 -17.52155 -16.74902 -16.39548 -16.05985 -15.47708 -15.23856 -14.98292 -14.80074 -14.47694 -14.23767 -13.92287 -13.78600 -13.76321 -13.69103 -13.15372 -13.10263 -12.87454 -12.61085 -12.54224 -12.19945 -12.04036 -11.84089 -11.53799 -11.33338 -11.14965 -11.06462 -11.01489 -10.86412 -10.75184 -10.56111 -9.80170 -9.71908 -9.40191 -9.07491 -8.92492 -8.86519 -8.22640 -6.49518 -6.21459 -3.91843 1.07717 1.79839 2.71223 3.02843 3.10884 3.21906 3.28328 3.32822 3.52130 3.72054 3.82818 3.96953 4.20754 4.29356 4.36616 4.53284 4.59700 4.70596 4.79657 4.85739 4.90086 4.99693 5.05671 5.10810 5.13135 5.13907 5.23635 5.24476 5.31286 5.38062 5.42030 5.55032 5.61703 5.63725 5.65222 5.77086 5.84084 5.90602 5.99029 6.14855 6.40182 6.48457 6.62550 7.60316 7.71477 7.90081 8.35845 8.62097 9.24081 10.86059 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035367 B = 0.001511 C = 0.001475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.503558 B =18524.046345 C =18976.803757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.036 4.036 3 C -0.220 4.220 4 C 0.030 3.970 5 C 0.123 3.877 6 N -0.512 5.512 7 C 0.039 3.961 8 C -0.129 4.129 9 C -0.101 4.101 10 H 0.092 0.908 11 C 0.131 3.869 12 N -0.738 5.738 13 C 0.531 3.469 14 O -0.518 6.518 15 C -0.153 4.153 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.044 3.956 26 N -0.361 5.361 27 O 0.098 5.902 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.171 0.829 32 H 0.099 0.901 33 H 0.057 0.943 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.398 0.602 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.053 0.947 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.617 -2.654 -13.992 35.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.100 4.100 3 C -0.242 4.242 4 C -0.130 4.130 5 C -0.005 4.005 6 N -0.237 5.237 7 C -0.088 4.088 8 C -0.167 4.167 9 C -0.120 4.120 10 H 0.110 0.890 11 C 0.006 3.994 12 N -0.392 5.392 13 C 0.317 3.683 14 O -0.393 6.393 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.083 4.083 26 N -0.065 5.065 27 O 0.031 5.969 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.188 0.812 32 H 0.117 0.883 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -30.854 -2.603 -15.207 34.496 hybrid contribution -0.485 -0.694 1.939 2.116 sum -31.339 -3.297 -13.267 34.191 Atomic orbital electron populations 1.20337 0.84028 1.04725 1.04067 1.24515 0.96407 0.86194 1.02871 1.22377 0.91183 1.00975 1.09618 1.23318 0.97123 0.89835 1.02676 1.20512 0.90266 0.99093 0.90664 1.64740 1.30886 1.10320 1.17714 1.22858 0.97168 0.90817 0.97988 1.22530 0.98081 0.95637 1.00470 1.22324 0.94887 0.96283 0.98533 0.88975 1.21229 0.90823 1.00816 0.86500 1.45963 1.09815 1.66478 1.16968 1.20309 0.81143 0.77527 0.89271 1.90701 1.60795 1.42157 1.45617 1.23529 1.05881 1.04540 0.96447 1.85394 0.94958 1.82132 1.20964 1.22914 0.97422 1.47912 1.00090 0.90873 1.24991 0.95339 0.94836 0.98404 1.70027 1.02579 1.41934 1.35758 0.86116 0.78549 0.78424 0.82405 1.19619 1.20571 1.20558 1.23213 0.90452 0.98037 0.96644 1.73862 0.96966 1.16414 1.19273 1.84826 1.11299 1.33240 1.67497 0.89440 0.89817 0.89001 0.81188 0.88262 0.92526 0.93290 0.90634 0.90667 0.90704 0.91629 0.91332 0.76808 0.89214 0.89252 0.92240 0.92832 0.89165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.17 10.45 36.01 0.38 0.20 16 2 C -0.04 -0.23 7.49 -35.30 -0.26 -0.50 16 3 C -0.22 -1.52 11.06 -39.38 -0.44 -1.96 16 4 C 0.03 0.27 6.36 -82.10 -0.52 -0.26 16 5 C 0.12 0.96 5.36 -4.97 -0.03 0.93 16 6 N -0.51 -4.37 5.26 -231.79 -1.22 -5.59 16 7 C 0.04 0.36 6.10 -2.75 -0.02 0.35 16 8 C -0.13 -1.11 6.19 -25.37 -0.16 -1.26 16 9 C -0.10 -0.85 3.13 -88.67 -0.28 -1.13 16 10 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 11 C 0.13 1.47 5.01 -4.04 -0.02 1.45 16 12 N -0.74 -9.70 5.40 -60.29 -0.33 -10.03 16 13 C 0.53 9.92 7.85 -10.98 -0.09 9.84 16 14 O -0.52 -11.84 15.86 5.56 0.09 -11.75 16 15 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 16 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 17 C -0.54 -15.33 9.50 30.94 0.29 -15.04 16 18 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.28 13.22 55.49 0.73 -25.54 16 21 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 25 C 0.04 0.34 5.99 -1.81 -0.01 0.33 16 26 N -0.36 -3.82 11.98 33.42 0.40 -3.42 16 27 O 0.10 0.91 11.20 17.16 0.19 1.10 16 28 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 29 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.09 0.10 8.14 -51.93 -0.42 -0.33 16 31 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.10 0.58 8.11 -51.93 -0.42 0.16 16 33 H 0.06 0.46 7.81 -51.93 -0.41 0.05 16 34 H 0.05 0.49 7.57 -51.93 -0.39 0.09 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.70 7.80 -51.93 -0.41 0.30 16 38 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.40 4.14 8.33 -40.82 -0.34 3.80 16 41 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 42 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.05 0.41 7.93 -51.93 -0.41 0.00 16 45 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 391.72 15.07 5.90 5.90 Total: -1.00 -36.12 391.72 -9.47 -45.60 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -6.99 Total: -0.96 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -1.02 Total: -7.91 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: -0.41 Total: -44.58 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.28 Total: -10.65 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.12 -9.47 -45.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663561649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.903 kcal (2) G-P(sol) polarization free energy of solvation -36.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds