Wall clock time and date at job start Sat Apr 11 2020 05:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35451 * 126.77949 * 2 1 4 4 C 1.41379 * 103.98604 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.80371 * 180.02562 * 4 3 2 6 6 N 1.46906 * 109.47317 * 94.99577 * 5 4 3 7 7 C 1.47897 * 110.99555 * 69.87469 * 6 5 4 8 8 C 1.54000 * 107.05672 * 145.84575 * 7 6 5 9 9 C 1.54598 * 105.22213 * 358.72428 * 8 7 6 10 10 H 1.09003 * 110.72246 * 96.45403 * 9 8 7 11 11 C 1.53005 * 110.72373 * 219.73164 * 9 8 7 12 12 N 1.46502 * 109.46933 * 293.55216 * 11 9 8 13 13 C 1.34779 * 119.99570 * 180.02562 * 12 11 9 14 14 O 1.21280 * 120.00270 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00019 * 179.97438 * 13 12 11 16 16 S 1.80998 * 109.47334 * 179.97438 * 15 13 12 17 17 C 1.76194 * 100.00149 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00128 * 359.97438 * 17 16 15 19 19 C 1.38802 * 119.99994 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00109 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99921 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47101 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46824 * 120.00367 * 21 19 17 24 24 H 1.48493 * 109.47393 * 240.00721 * 21 19 17 25 25 C 1.48533 * 111.00245 * 187.27419 * 6 5 4 26 26 N 1.30179 * 106.39842 * 0.25862 * 4 3 2 27 27 O 1.20928 * 111.60059 * 359.53795 * 26 4 3 28 28 H 1.09006 * 109.46602 * 90.00271 * 1 2 3 29 29 H 1.09000 * 109.47351 * 210.00157 * 1 2 3 30 30 H 1.08996 * 109.46703 * 330.00733 * 1 2 3 31 31 H 1.08001 * 128.00632 * 0.02562 * 3 2 1 32 32 H 1.09004 * 109.46704 * 335.00004 * 5 4 3 33 33 H 1.08991 * 109.47304 * 214.99744 * 5 4 3 34 34 H 1.09000 * 109.91881 * 26.49521 * 7 6 5 35 35 H 1.09002 * 110.08496 * 265.28456 * 7 6 5 36 36 H 1.09002 * 110.31026 * 117.69182 * 8 7 6 37 37 H 1.09000 * 110.30915 * 239.76211 * 8 7 6 38 38 H 1.09000 * 109.46934 * 53.54799 * 11 9 8 39 39 H 1.08992 * 109.47087 * 173.54757 * 11 9 8 40 40 H 0.96998 * 120.00409 * 359.97438 * 12 11 9 41 41 H 1.09000 * 109.46823 * 299.99660 * 15 13 12 42 42 H 1.08999 * 109.46974 * 59.99571 * 15 13 12 43 43 H 0.97002 * 120.00268 * 179.97438 * 20 19 17 44 44 H 1.09003 * 110.66452 * 318.71648 * 25 6 5 45 45 H 1.08995 * 110.66642 * 81.67547 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5372 0.0006 5 6 4.9211 1.2998 0.0014 6 7 5.4038 1.4434 1.3815 7 6 5.8522 0.1427 1.9241 8 6 7.0394 0.4297 2.8621 9 6 7.2531 1.9591 2.7902 10 1 6.7519 2.4580 3.6197 11 6 8.7453 2.2972 2.7751 12 7 9.3428 1.9270 4.0604 13 6 10.6567 2.1350 4.2775 14 8 11.3443 2.6282 3.4087 15 6 11.2713 1.7548 5.5999 16 16 13.0365 2.1546 5.5819 17 6 13.4871 1.6230 7.2002 18 1 12.7411 1.2009 7.8572 19 6 14.8009 1.7466 7.6306 20 7 15.7101 2.2615 6.8301 21 14 15.2785 1.1837 9.3466 22 1 14.0816 0.6463 10.0423 23 1 16.3123 0.1221 9.2494 24 1 15.8212 2.3346 10.1120 25 6 6.5887 2.3371 1.4407 26 7 3.4764 -0.7565 -0.0047 27 8 2.3095 -1.0737 0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3632 0.8900 0.5137 31 1 2.0346 2.1270 0.0004 32 1 4.7633 2.2871 -0.4329 33 1 5.6608 0.7578 -0.5876 34 1 6.1708 -0.5090 1.1106 35 1 5.0434 -0.3288 2.4824 36 1 6.7974 0.1289 3.8815 37 1 7.9305 -0.0936 2.5154 38 1 9.2351 1.7437 1.9739 39 1 8.8738 3.3667 2.6092 40 1 8.7929 1.5329 4.7554 41 1 10.7812 2.3082 6.4008 42 1 11.1431 0.6852 5.7660 43 1 16.6282 2.3483 7.1310 44 1 7.2652 2.1346 0.6103 45 1 6.2821 3.3831 1.4391 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663561649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:51 Heat of formation + Delta-G solvation = -2.785120 kcal Electronic energy + Delta-G solvation = -25509.908428 eV Core-core repulsion = 21655.630741 eV Total energy + Delta-G solvation = -3854.277686 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.88987 -40.87155 -39.95583 -36.57454 -35.24578 -34.58746 -34.26933 -32.81964 -31.16831 -30.09495 -28.63418 -27.87194 -27.56988 -25.42628 -24.09494 -22.50723 -21.62570 -21.48954 -20.67589 -19.80136 -18.66192 -18.09973 -17.80945 -17.62079 -17.10055 -16.88363 -16.51658 -16.29141 -15.95599 -15.62307 -15.07058 -14.91014 -14.68731 -14.51841 -14.40111 -14.27405 -13.94790 -13.87183 -13.45133 -13.25912 -13.23735 -13.16047 -12.91466 -12.87793 -12.65981 -12.60265 -12.21814 -12.00039 -11.90821 -11.70731 -11.57968 -11.19112 -11.16074 -10.95083 -10.27459 -10.22466 -10.12179 -9.58470 -8.66877 -8.35077 -6.13047 0.54176 1.22715 1.27562 1.41299 1.47231 1.58382 1.61423 2.24489 2.27010 2.29598 2.90403 2.99307 3.22683 3.31528 3.43937 3.58025 3.68015 3.79320 4.01874 4.14002 4.15865 4.24247 4.28500 4.29688 4.33473 4.45671 4.51424 4.52714 4.63616 4.65088 4.67724 4.73816 4.75146 4.88742 4.93278 4.96227 5.05172 5.10205 5.21817 5.28677 5.41985 5.43608 5.72503 5.84129 6.19875 6.50094 7.06504 7.24193 7.32964 8.74456 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035367 B = 0.001511 C = 0.001475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.503558 B =18524.046345 C =18976.803757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.033 4.033 3 C -0.229 4.229 4 C 0.018 3.982 5 C 0.123 3.877 6 N -0.513 5.513 7 C 0.045 3.955 8 C -0.126 4.126 9 C -0.087 4.087 10 H 0.104 0.896 11 C 0.133 3.867 12 N -0.711 5.711 13 C 0.533 3.467 14 O -0.567 6.567 15 C -0.130 4.130 16 S -0.152 6.152 17 C -0.546 4.546 18 H 0.083 0.917 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.257 1.257 23 H -0.274 1.274 24 H -0.273 1.273 25 C 0.046 3.954 26 N -0.398 5.398 27 O 0.079 5.921 28 H 0.103 0.897 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.194 0.806 32 H 0.121 0.879 33 H 0.048 0.952 34 H 0.035 0.965 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.416 0.584 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.271 0.729 44 H 0.053 0.947 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.302 -2.532 -12.756 37.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.096 4.096 3 C -0.250 4.250 4 C -0.141 4.141 5 C -0.005 4.005 6 N -0.238 5.238 7 C -0.083 4.083 8 C -0.165 4.165 9 C -0.107 4.107 10 H 0.123 0.877 11 C 0.009 3.991 12 N -0.365 5.365 13 C 0.319 3.681 14 O -0.445 6.445 15 C -0.281 4.281 16 S 0.075 5.925 17 C -0.694 4.694 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.180 1.180 23 H -0.200 1.200 24 H -0.199 1.199 25 C -0.082 4.082 26 N -0.105 5.105 27 O 0.015 5.985 28 H 0.121 0.879 29 H 0.109 0.891 30 H 0.128 0.872 31 H 0.212 0.788 32 H 0.139 0.861 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.253 0.747 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -33.620 -2.504 -13.966 36.492 hybrid contribution 0.177 -0.738 1.462 1.647 sum -33.443 -3.242 -12.504 35.851 Atomic orbital electron populations 1.20562 0.81097 1.05956 1.05417 1.25288 0.97943 0.85343 1.01021 1.22717 0.90264 1.02244 1.09807 1.23661 0.98347 0.89727 1.02337 1.20597 0.89709 1.00007 0.90198 1.64745 1.31014 1.09849 1.18221 1.22741 0.96895 0.91100 0.97560 1.22510 0.97418 0.95655 1.00874 1.22212 0.92708 0.96175 0.99583 0.87742 1.21330 0.92378 1.00538 0.84893 1.45706 1.07969 1.64622 1.18171 1.20051 0.82567 0.77343 0.88118 1.90692 1.62347 1.44719 1.46762 1.23375 1.00472 1.05956 0.98316 1.85571 1.01978 1.83017 1.21955 1.23246 0.98125 1.47928 1.00120 0.89908 1.26120 0.95189 0.94621 1.03150 1.70187 1.03104 1.43286 1.38220 0.84904 0.78567 0.78028 0.76435 1.18042 1.19972 1.19880 1.23254 0.90155 0.98729 0.96027 1.73857 0.97868 1.17567 1.21199 1.84775 1.11329 1.34450 1.67943 0.87869 0.89145 0.87154 0.78848 0.86068 0.93402 0.94631 0.91718 0.89596 0.91598 0.92653 0.91519 0.74735 0.87121 0.87306 0.91989 0.92871 0.87499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.18 10.45 71.24 0.74 0.57 16 2 C -0.03 -0.38 7.49 25.04 0.19 -0.19 16 3 C -0.23 -2.83 11.06 22.40 0.25 -2.58 16 4 C 0.02 0.31 6.36 43.58 0.28 0.59 16 5 C 0.12 1.81 5.36 85.56 0.46 2.27 16 6 N -0.51 -8.04 5.26 -887.24 -4.66 -12.71 16 7 C 0.05 0.80 6.10 86.45 0.53 1.33 16 8 C -0.13 -1.98 6.19 31.48 0.19 -1.78 16 9 C -0.09 -1.28 3.13 -9.53 -0.03 -1.31 16 10 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 11 C 0.13 2.78 5.01 86.38 0.43 3.21 16 12 N -0.71 -17.33 5.40 -463.06 -2.50 -19.83 16 13 C 0.53 19.51 7.85 87.66 0.69 20.20 16 14 O -0.57 -26.25 15.86 -3.03 -0.05 -26.30 16 15 C -0.13 -5.13 6.16 71.24 0.44 -4.69 16 16 S -0.15 -8.50 20.57 -56.49 -1.16 -9.66 16 17 C -0.55 -31.32 9.50 67.96 0.65 -30.67 16 18 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 19 C 0.01 0.79 5.49 84.86 0.47 1.26 16 20 N -0.91 -56.19 13.22 21.65 0.29 -55.91 16 21 Si 1.00 43.73 29.55 68.60 2.03 45.75 16 22 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 C 0.05 0.62 5.99 86.70 0.52 1.14 16 26 N -0.40 -8.59 11.98 -49.55 -0.59 -9.18 16 27 O 0.08 1.48 11.20 71.58 0.80 2.28 16 28 H 0.10 -0.02 8.14 -2.38 -0.02 -0.04 16 29 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 30 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 31 H 0.19 1.27 8.06 -2.91 -0.02 1.24 16 32 H 0.12 1.18 8.11 -2.39 -0.02 1.17 16 33 H 0.05 0.78 7.81 -2.39 -0.02 0.76 16 34 H 0.04 0.72 7.57 -2.39 -0.02 0.70 16 35 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.07 1.17 7.80 -2.39 -0.02 1.15 16 38 H 0.06 1.32 8.08 -2.39 -0.02 1.30 16 39 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.42 7.40 8.33 -92.71 -0.77 6.63 16 41 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 42 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 43 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 44 H 0.05 0.73 7.93 -2.39 -0.02 0.71 16 45 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -81.27 391.72 0.17 -81.10 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.22 Total: 15.13 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: 5.80 Total: -10.67 kcal Atomic # 7 Polarization: -90.16 SS G_CDS: -7.47 Total: -97.63 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: 0.75 Total: -24.02 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.66 kcal Total: -81.27 0.17 -81.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663561649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.312 kcal (2) G-P(sol) polarization free energy of solvation -81.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds