Wall clock time and date at job start Sat Apr 11 2020 05:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30255 * 125.61467 * 2 1 4 4 C 1.34477 * 108.69949 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.16649 * 179.97438 * 4 3 2 6 6 C 1.34326 * 107.67246 * 0.02562 * 4 3 2 7 7 C 1.50701 * 126.44829 * 179.97438 * 6 4 3 8 8 N 1.46896 * 109.47102 * 89.99808 * 7 6 4 9 9 C 1.46898 * 111.00098 * 181.47555 * 8 7 6 10 10 C 1.53001 * 115.55163 * 82.07124 * 9 8 7 11 11 N 1.46501 * 109.47196 * 35.36671 * 10 9 8 12 12 C 1.34771 * 119.99685 * 185.05251 * 11 10 9 13 13 O 1.21277 * 120.00655 * 0.02562 * 12 11 10 14 14 C 1.50708 * 119.99812 * 179.97438 * 12 11 10 15 15 S 1.80995 * 109.47105 * 180.02562 * 14 12 11 16 16 C 1.76200 * 100.00000 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99900 * 0.02562 * 16 15 14 18 18 C 1.38798 * 120.00212 * 179.97438 * 16 15 14 19 19 N 1.31631 * 120.00069 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00007 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47335 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47167 * 120.00300 * 20 18 16 23 23 H 1.48504 * 109.47282 * 240.00228 * 20 18 16 24 24 C 1.53002 * 117.49577 * 296.40235 * 9 8 7 25 25 C 1.53006 * 60.03184 * 252.49617 * 24 9 8 26 26 O 1.33966 * 125.62586 * 180.34298 * 2 1 3 27 27 H 1.08996 * 109.47165 * 89.97781 * 1 2 3 28 28 H 1.09005 * 109.46421 * 209.97001 * 1 2 3 29 29 H 1.08993 * 109.47416 * 329.97151 * 1 2 3 30 30 H 1.09003 * 109.47563 * 270.00658 * 5 4 3 31 31 H 1.08998 * 109.46906 * 30.00585 * 5 4 3 32 32 H 1.08994 * 109.47357 * 150.00177 * 5 4 3 33 33 H 1.09001 * 109.47081 * 329.99677 * 7 6 4 34 34 H 1.09000 * 109.46919 * 209.99657 * 7 6 4 35 35 H 1.00901 * 111.00158 * 57.51309 * 8 7 6 36 36 H 1.08998 * 109.46777 * 155.36924 * 10 9 8 37 37 H 1.09005 * 109.46959 * 275.36704 * 10 9 8 38 38 H 0.96993 * 119.99732 * 5.05673 * 11 10 9 39 39 H 1.08996 * 109.47247 * 300.00493 * 14 12 11 40 40 H 1.09003 * 109.46903 * 60.00288 * 14 12 11 41 41 H 0.97001 * 120.00317 * 179.97438 * 19 18 16 42 42 H 1.08998 * 117.50023 * 359.97438 * 24 9 8 43 43 H 1.08992 * 117.49869 * 144.99787 * 24 9 8 44 44 H 1.08999 * 117.49789 * 107.49854 * 25 24 9 45 45 H 1.08997 * 117.50011 * 252.52433 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2655 1.0589 0.0000 4 6 3.5521 0.6676 -0.0006 5 6 4.7570 1.5729 -0.0013 6 6 3.5699 -0.6755 -0.0015 7 6 4.7938 -1.5547 -0.0029 8 7 5.1925 -1.8413 1.3816 9 6 6.4054 -2.6691 1.4195 10 6 7.7257 -1.9130 1.2582 11 7 7.6223 -0.6051 1.9101 12 6 8.6337 0.2799 1.8092 13 8 9.6293 -0.0062 1.1783 14 6 8.5272 1.6255 2.4793 15 16 10.0325 2.5788 2.1614 16 6 9.6470 4.0599 3.0344 17 1 8.7029 4.1521 3.5509 18 6 10.5568 5.1077 3.0593 19 7 11.7076 4.9952 2.4303 20 14 10.1477 6.6782 3.9843 21 1 8.8028 6.5533 4.6013 22 1 11.1600 6.9049 5.0469 23 1 10.1553 7.8248 3.0407 24 6 6.3195 -4.0758 0.8239 25 6 6.3987 -3.8916 2.3408 26 8 2.2874 -1.0889 -0.0065 27 1 -0.3633 0.0004 -1.0276 28 1 -0.3632 -0.8903 0.5134 29 1 -0.3634 0.8897 0.5142 30 1 5.0469 1.7911 -1.0292 31 1 4.5131 2.5027 0.5126 32 1 5.5823 1.0797 0.5121 33 1 5.6078 -1.0435 -0.5170 34 1 4.5693 -2.4892 -0.5172 35 1 4.4398 -2.2790 1.8914 36 1 8.5309 -2.4858 1.7183 37 1 7.9380 -1.7748 0.1980 38 1 6.8260 -0.3763 2.4144 39 1 7.6665 2.1627 2.0810 40 1 8.4041 1.4877 3.5536 41 1 12.3434 5.7277 2.4473 42 1 5.3629 -4.3871 0.4043 43 1 7.2036 -4.4626 0.3172 44 1 5.4942 -4.0816 2.9187 45 1 7.3349 -4.1568 2.8318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670746185.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:02 Heat of formation + Delta-G solvation = 8.686024 kcal Electronic energy + Delta-G solvation = -26749.298444 eV Core-core repulsion = 22895.518184 eV Total energy + Delta-G solvation = -3853.780260 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.56497 -39.71402 -38.44638 -35.38377 -34.65950 -33.84646 -32.38316 -32.30295 -29.71559 -29.52003 -27.86212 -26.32145 -25.35946 -24.32628 -22.79808 -21.96425 -20.76338 -20.24838 -20.04719 -17.79875 -17.19617 -16.97969 -16.50020 -16.36085 -16.02090 -15.15998 -14.98903 -14.77180 -14.75434 -14.48601 -14.16092 -13.80774 -13.55037 -13.33878 -13.25813 -13.23803 -13.05313 -13.00393 -12.81858 -12.51950 -12.24786 -12.00545 -11.96904 -11.72727 -11.29209 -11.04397 -11.03477 -10.96967 -10.72408 -10.69069 -10.42784 -9.75853 -9.34366 -9.03683 -9.03339 -8.77031 -8.68446 -8.17404 -6.44563 -6.17576 -3.87233 1.13566 2.33080 2.44575 3.01205 3.18323 3.24673 3.25095 3.33115 3.41744 3.60341 3.77468 3.83098 4.24925 4.29162 4.34472 4.43682 4.50053 4.66831 4.70637 4.96175 5.01772 5.06725 5.17784 5.19168 5.22014 5.23343 5.33386 5.46009 5.53918 5.56429 5.58157 5.61290 5.66310 5.68294 5.82407 5.84579 5.95967 5.97957 6.21486 6.27955 6.36350 6.71110 6.82875 7.54821 7.64727 7.90340 8.40226 8.72542 9.28226 10.89893 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010194 B = 0.002911 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.941204 B = 9614.889897 C =11870.079643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.189 3.811 3 N -0.481 5.481 4 C 0.024 3.976 5 C -0.078 4.078 6 C -0.063 4.063 7 C 0.154 3.846 8 N -0.645 5.645 9 C 0.037 3.963 10 C 0.171 3.829 11 N -0.724 5.724 12 C 0.530 3.470 13 O -0.524 6.524 14 C -0.151 4.151 15 S -0.062 6.062 16 C -0.533 4.533 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.917 3.083 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.202 4.202 25 C -0.166 4.166 26 O -0.206 6.206 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.110 0.890 34 H 0.052 0.948 35 H 0.349 0.651 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.407 0.593 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.267 0.733 42 H 0.095 0.905 43 H 0.104 0.896 44 H 0.097 0.903 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.585 -18.392 -3.908 28.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.018 4.018 3 N -0.212 5.212 4 C -0.097 4.097 5 C -0.136 4.136 6 C -0.116 4.116 7 C 0.026 3.974 8 N -0.276 5.276 9 C -0.055 4.055 10 C 0.046 3.954 11 N -0.380 5.380 12 C 0.316 3.684 13 O -0.399 6.399 14 C -0.302 4.302 15 S 0.165 5.835 16 C -0.681 4.681 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.504 5.504 20 Si 0.744 3.256 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.242 4.242 25 C -0.203 4.203 26 O -0.093 6.093 27 H 0.110 0.890 28 H 0.105 0.895 29 H 0.120 0.880 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.128 0.872 34 H 0.070 0.930 35 H 0.168 0.832 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.243 0.757 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.077 0.923 42 H 0.114 0.886 43 H 0.122 0.878 44 H 0.116 0.884 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -19.669 -17.615 -4.934 26.861 hybrid contribution -2.038 -0.162 1.300 2.423 sum -21.708 -17.777 -3.635 28.292 Atomic orbital electron populations 1.20244 0.81375 1.05086 1.04599 1.26228 0.96341 0.78746 1.00439 1.70418 1.01890 1.30221 1.18665 1.21613 0.93204 0.92118 1.02753 1.20231 0.91856 0.98281 1.03186 1.22876 0.83018 0.94983 1.10684 1.20190 0.90063 0.96614 0.90522 1.60108 1.06140 1.48395 1.12908 1.21921 0.92029 0.85924 1.05654 1.20619 0.92287 0.84068 0.98422 1.45814 1.21132 1.15206 1.55839 1.20306 0.82383 0.85509 0.80207 1.90696 1.30266 1.78069 1.40884 1.23511 1.07573 0.96090 1.03030 1.85368 1.15968 1.12393 1.69757 1.22914 1.06324 1.01100 1.37747 0.90891 1.24985 0.94487 0.98591 0.95551 1.70030 1.07327 1.32495 1.40533 0.86134 0.78499 0.81725 0.79254 1.19588 1.20636 1.20591 1.23544 1.03926 1.00121 0.96577 1.23373 1.04287 0.99620 0.93035 1.84331 1.16692 1.37818 1.70498 0.89019 0.89485 0.88040 0.90603 0.90250 0.89776 0.87239 0.93003 0.83208 0.91120 0.91187 0.75675 0.89257 0.89373 0.92307 0.88637 0.87769 0.88422 0.87483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.30 10.51 36.01 0.38 0.08 16 2 C 0.19 1.97 8.34 -12.95 -0.11 1.86 16 3 N -0.48 -6.27 11.29 -7.36 -0.08 -6.35 16 4 C 0.02 0.30 7.11 -82.81 -0.59 -0.29 16 5 C -0.08 -0.93 10.04 36.01 0.36 -0.57 16 6 C -0.06 -0.68 6.91 -35.69 -0.25 -0.93 16 7 C 0.15 1.32 5.66 -4.98 -0.03 1.29 16 8 N -0.64 -5.16 5.62 -101.18 -0.57 -5.73 16 9 C 0.04 0.29 2.14 -131.56 -0.28 0.01 16 10 C 0.17 1.90 5.86 -4.04 -0.02 1.87 16 11 N -0.72 -9.62 5.40 -60.29 -0.33 -9.94 16 12 C 0.53 9.77 7.85 -10.98 -0.09 9.69 16 13 O -0.52 -11.74 15.86 5.56 0.09 -11.65 16 14 C -0.15 -3.07 6.16 36.01 0.22 -2.84 16 15 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 16 C -0.53 -15.24 9.50 30.94 0.29 -14.95 16 17 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 18 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.32 13.22 55.49 0.73 -25.59 16 20 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C -0.20 -1.29 9.59 -26.73 -0.26 -1.54 16 25 C -0.17 -1.08 9.87 -26.69 -0.26 -1.35 16 26 O -0.21 -2.21 10.77 5.37 0.06 -2.15 16 27 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.08 0.98 7.79 -51.93 -0.40 0.58 16 33 H 0.11 1.01 7.79 -51.93 -0.40 0.60 16 34 H 0.05 0.39 7.40 -51.93 -0.38 0.01 16 35 H 0.35 2.54 8.50 -39.29 -0.33 2.21 16 36 H 0.07 0.81 7.91 -51.93 -0.41 0.40 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.41 4.82 7.77 -40.82 -0.32 4.50 16 39 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 40 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 41 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.10 0.55 7.75 -51.93 -0.40 0.15 16 43 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.10 0.55 8.07 -51.93 -0.42 0.13 16 45 H 0.11 0.71 8.06 -51.93 -0.42 0.29 16 LS Contribution 399.05 15.07 6.01 6.01 Total: -1.00 -35.83 399.05 -8.88 -44.72 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -6.84 Total: 3.64 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -0.72 Total: -5.68 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: -0.24 Total: -47.60 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.15 Total: -13.80 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.83 -8.88 -44.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670746185.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.403 kcal (2) G-P(sol) polarization free energy of solvation -35.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds