Wall clock time and date at job start Sat Apr 11 2020 05:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35446 * 126.77487 * 2 1 4 4 C 1.41380 * 103.98338 * 180.10222 * 3 2 1 5 5 C 1.50704 * 126.79969 * 179.89010 * 4 3 2 6 6 N 1.46903 * 109.47306 * 94.70715 * 5 4 3 7 7 C 1.46899 * 111.00341 * 179.97438 * 6 5 4 8 8 C 1.52994 * 109.47380 * 185.03458 * 7 6 5 9 9 H 1.09008 * 109.99927 * 305.62397 * 8 7 6 10 10 C 1.54321 * 109.77403 * 66.77260 * 8 7 6 11 11 C 1.55154 * 102.86121 * 141.88503 * 10 8 7 12 12 C 1.54906 * 101.58523 * 324.30432 * 11 10 8 13 13 N 1.47022 * 109.88327 * 184.52215 * 8 7 6 14 14 C 1.34775 * 125.64672 * 61.68274 * 13 8 7 15 15 O 1.21278 * 120.00122 * 354.78724 * 14 13 8 16 16 C 1.50700 * 119.99652 * 174.79228 * 14 13 8 17 17 S 1.81001 * 109.46915 * 179.97438 * 16 14 13 18 18 C 1.76200 * 100.00236 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99889 * 359.97438 * 18 17 16 20 20 C 1.38800 * 120.00202 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00009 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99871 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47157 * 90.00134 * 22 20 18 24 24 H 1.48504 * 109.46827 * 209.99947 * 22 20 18 25 25 H 1.48496 * 109.47299 * 329.99840 * 22 20 18 26 26 N 1.30176 * 106.39616 * 359.61941 * 4 3 2 27 27 O 1.20918 * 111.60070 * 0.25080 * 26 4 3 28 28 H 1.09004 * 109.47244 * 180.30090 * 1 2 3 29 29 H 1.09005 * 109.47228 * 300.29835 * 1 2 3 30 30 H 1.08997 * 109.47479 * 60.30270 * 1 2 3 31 31 H 1.07999 * 128.01035 * 359.95994 * 3 2 1 32 32 H 1.08990 * 109.47419 * 334.70594 * 5 4 3 33 33 H 1.09004 * 109.46967 * 214.70222 * 5 4 3 34 34 H 1.00904 * 111.00034 * 303.95597 * 6 5 4 35 35 H 1.08999 * 109.46744 * 65.03760 * 7 6 5 36 36 H 1.09000 * 109.47110 * 305.03753 * 7 6 5 37 37 H 1.08998 * 110.92129 * 23.47006 * 10 8 7 38 38 H 1.08997 * 110.74285 * 260.22049 * 10 8 7 39 39 H 1.09003 * 110.99962 * 206.22861 * 11 10 8 40 40 H 1.09000 * 111.03850 * 82.39648 * 11 10 8 41 41 H 1.09001 * 110.36858 * 278.17674 * 12 11 10 42 42 H 1.08996 * 110.46130 * 155.89537 * 12 11 10 43 43 H 1.08999 * 109.47607 * 60.00099 * 16 14 13 44 44 H 1.08999 * 109.47519 * 299.99356 * 16 14 13 45 45 H 0.96994 * 120.00223 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5372 -0.0024 5 6 4.9210 1.3001 -0.0058 6 7 5.4039 1.4509 1.3734 7 6 6.6723 2.1909 1.4091 8 6 7.2061 2.2191 2.8427 9 1 6.4469 2.6181 3.5154 10 6 7.6018 0.7932 3.2806 11 6 8.8861 1.0329 4.1176 12 6 9.5448 2.2048 3.3480 13 7 8.4184 3.0484 2.9086 14 6 8.4872 4.3632 2.6208 15 8 7.5145 4.9397 2.1823 16 6 9.7729 5.1170 2.8438 17 16 9.5480 6.8482 2.3658 18 6 11.1562 7.4749 2.7200 19 1 11.9175 6.8174 3.1129 20 6 11.4443 8.8139 2.4951 21 7 10.5163 9.6155 2.0166 22 14 13.1495 9.4781 2.8699 23 1 14.0075 9.3476 1.6649 24 1 13.0498 10.9091 3.2541 25 1 13.7467 8.7057 3.9888 26 7 3.4763 -0.7564 0.0047 27 8 2.3094 -1.0736 0.0060 28 1 -0.3634 -1.0277 0.0054 29 1 -0.3634 0.5185 0.8873 30 1 -0.3634 0.5091 -0.8926 31 1 2.0344 2.1270 -0.0006 32 1 4.7632 2.2849 -0.4452 33 1 5.6607 0.7549 -0.5921 34 1 4.7085 1.8963 1.9533 35 1 6.5076 3.2111 1.0627 36 1 7.3980 1.6997 0.7608 37 1 7.8168 0.1660 2.4155 38 1 6.8193 0.3467 3.8940 39 1 9.5272 0.1514 4.1106 40 1 8.6390 1.3256 5.1381 41 1 10.0967 1.8299 2.4860 42 1 10.2067 2.7683 4.0055 43 1 10.5638 4.6733 2.2391 44 1 10.0476 5.0634 3.8972 45 1 10.7177 10.5511 1.8591 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671270931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:08 Heat of formation + Delta-G solvation = 26.511428 kcal Electronic energy + Delta-G solvation = -26110.119571 eV Core-core repulsion = 22257.112278 eV Total energy + Delta-G solvation = -3853.007293 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.17609 -40.02513 -37.44173 -36.50026 -34.21475 -33.46886 -32.44395 -31.73891 -30.37313 -28.62280 -28.13544 -26.63853 -25.50800 -24.17718 -23.18160 -22.48091 -21.11437 -20.45470 -18.95229 -17.89287 -17.68601 -17.43429 -16.84320 -16.43404 -15.71150 -15.08305 -14.88731 -14.81776 -14.63021 -14.35953 -14.14102 -14.05657 -13.78173 -13.67171 -13.36720 -13.21932 -12.90711 -12.84074 -12.55919 -12.41025 -12.23650 -12.01106 -11.62496 -11.35016 -11.29789 -11.07577 -11.03351 -10.96260 -10.82875 -10.76741 -10.46713 -9.82680 -9.60530 -9.42484 -9.07956 -8.69473 -8.46875 -8.25054 -6.51794 -6.23125 -3.93755 1.19284 1.91114 2.82121 2.88155 3.03270 3.21284 3.24647 3.29194 3.56830 3.85730 4.05809 4.18958 4.29415 4.46576 4.50219 4.72812 4.76157 4.83328 4.94651 4.95476 4.99804 5.11910 5.12326 5.19761 5.21467 5.26087 5.32397 5.43464 5.50422 5.53565 5.61106 5.65078 5.70365 5.75961 5.82808 5.86106 5.87078 5.97921 6.13229 6.16621 6.43874 6.69986 7.08394 7.58258 7.68613 8.03992 8.33914 8.54358 9.22248 10.84331 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018516 B = 0.002003 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.823820 B =13977.762705 C =15183.180129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.036 4.036 3 C -0.231 4.231 4 C 0.024 3.976 5 C 0.138 3.862 6 N -0.679 5.679 7 C 0.046 3.954 8 C 0.145 3.855 9 H 0.072 0.928 10 C -0.112 4.112 11 C -0.137 4.137 12 C 0.101 3.899 13 N -0.622 5.622 14 C 0.549 3.451 15 O -0.516 6.516 16 C -0.147 4.147 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 N -0.348 5.348 27 O 0.099 5.901 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.170 0.830 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.343 0.657 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.933 -22.123 -0.733 26.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.099 4.099 3 C -0.253 4.253 4 C -0.135 4.135 5 C 0.008 3.992 6 N -0.311 5.311 7 C -0.083 4.083 8 C 0.041 3.959 9 H 0.090 0.910 10 C -0.150 4.150 11 C -0.175 4.175 12 C -0.023 4.023 13 N -0.360 5.360 14 C 0.338 3.662 15 O -0.390 6.390 16 C -0.298 4.298 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 N -0.051 5.051 27 O 0.031 5.969 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.188 0.812 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.161 0.839 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.233 -22.621 -1.455 27.311 hybrid contribution 1.646 1.506 0.551 2.298 sum -13.588 -21.115 -0.904 25.125 Atomic orbital electron populations 1.20340 0.84051 1.04643 1.04147 1.24496 0.96399 0.86223 1.02804 1.22465 0.91493 1.01121 1.10245 1.23418 0.96842 0.90050 1.03202 1.20139 0.90253 0.97393 0.91396 1.60351 1.06074 1.55559 1.09138 1.22366 0.90940 0.97704 0.97321 1.21361 0.87835 0.90861 0.95866 0.90991 1.22554 0.97318 0.94975 1.00159 1.22826 0.97331 0.98009 0.99312 1.22301 0.89606 0.91839 0.98522 1.48576 1.10055 1.08103 1.69246 1.20035 0.90157 0.79549 0.76453 1.90677 1.38069 1.66934 1.43369 1.23518 0.97018 1.04337 1.04912 1.85363 1.18372 0.95012 1.84708 1.22859 0.97543 0.97475 1.50420 0.90931 1.24993 0.98185 0.95769 0.94639 1.70016 1.33007 1.05535 1.41747 0.86164 0.82456 0.78129 0.78738 1.20262 1.20737 1.19683 1.73861 0.96515 1.16424 1.18339 1.84847 1.11438 1.33277 1.67323 0.89915 0.89135 0.89185 0.81213 0.92434 0.89237 0.83905 0.92460 0.90787 0.90334 0.90178 0.89978 0.90668 0.91435 0.90308 0.89354 0.89277 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.26 10.45 36.00 0.38 0.11 16 2 C -0.04 -0.28 7.49 -35.31 -0.26 -0.54 16 3 C -0.23 -1.99 11.06 -39.38 -0.44 -2.42 16 4 C 0.02 0.26 6.84 -82.10 -0.56 -0.30 16 5 C 0.14 1.43 6.27 -4.97 -0.03 1.40 16 6 N -0.68 -7.36 6.25 -115.06 -0.72 -8.08 16 7 C 0.05 0.58 5.07 -3.83 -0.02 0.56 16 8 C 0.15 1.80 3.13 -66.96 -0.21 1.59 16 9 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 10 C -0.11 -1.07 6.27 -24.90 -0.16 -1.23 16 11 C -0.14 -1.19 7.08 -24.59 -0.17 -1.36 16 12 C 0.10 1.11 6.74 -2.53 -0.02 1.09 16 13 N -0.62 -9.02 3.07 -163.02 -0.50 -9.52 16 14 C 0.55 10.52 7.69 -10.99 -0.08 10.43 16 15 O -0.52 -11.61 14.66 5.56 0.08 -11.53 16 16 C -0.15 -3.03 5.09 36.01 0.18 -2.85 16 17 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 18 C -0.53 -15.25 9.50 30.94 0.29 -14.95 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 22 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 N -0.35 -4.23 12.07 33.42 0.40 -3.82 16 27 O 0.10 1.03 11.20 17.19 0.19 1.22 16 28 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.34 3.59 8.78 -39.29 -0.34 3.24 16 35 H 0.06 0.89 6.56 -51.93 -0.34 0.55 16 36 H 0.07 0.92 8.02 -51.93 -0.42 0.50 16 37 H 0.08 0.76 7.78 -51.93 -0.40 0.35 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 0.85 7.47 -51.93 -0.39 0.47 16 43 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 44 H 0.09 1.72 7.95 -51.92 -0.41 1.30 16 45 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 390.35 15.07 5.88 5.88 Total: -1.00 -35.06 390.35 -9.28 -44.34 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -6.92 Total: 0.87 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -1.20 Total: -6.47 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: -0.08 Total: -46.83 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.27 Total: -10.30 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.06 -9.28 -44.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671270931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.855 kcal (2) G-P(sol) polarization free energy of solvation -35.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds