Wall clock time and date at job start Sat Apr 11 2020 05:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35446 * 126.77487 * 2 1 4 4 C 1.41380 * 103.98338 * 180.10222 * 3 2 1 5 5 C 1.50704 * 126.79969 * 179.89010 * 4 3 2 6 6 N 1.46903 * 109.47306 * 94.70715 * 5 4 3 7 7 C 1.46899 * 111.00341 * 179.97438 * 6 5 4 8 8 C 1.52994 * 109.47380 * 185.03458 * 7 6 5 9 9 H 1.09008 * 109.99927 * 305.62397 * 8 7 6 10 10 C 1.54321 * 109.77403 * 66.77260 * 8 7 6 11 11 C 1.55154 * 102.86121 * 141.88503 * 10 8 7 12 12 C 1.54906 * 101.58523 * 324.30432 * 11 10 8 13 13 N 1.47022 * 109.88327 * 184.52215 * 8 7 6 14 14 C 1.34775 * 125.64672 * 61.68274 * 13 8 7 15 15 O 1.21278 * 120.00122 * 354.78724 * 14 13 8 16 16 C 1.50700 * 119.99652 * 174.79228 * 14 13 8 17 17 S 1.81001 * 109.46915 * 179.97438 * 16 14 13 18 18 C 1.76200 * 100.00236 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99889 * 359.97438 * 18 17 16 20 20 C 1.38800 * 120.00202 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00009 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99871 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47157 * 90.00134 * 22 20 18 24 24 H 1.48504 * 109.46827 * 209.99947 * 22 20 18 25 25 H 1.48496 * 109.47299 * 329.99840 * 22 20 18 26 26 N 1.30176 * 106.39616 * 359.61941 * 4 3 2 27 27 O 1.20918 * 111.60070 * 0.25080 * 26 4 3 28 28 H 1.09004 * 109.47244 * 180.30090 * 1 2 3 29 29 H 1.09005 * 109.47228 * 300.29835 * 1 2 3 30 30 H 1.08997 * 109.47479 * 60.30270 * 1 2 3 31 31 H 1.07999 * 128.01035 * 359.95994 * 3 2 1 32 32 H 1.08990 * 109.47419 * 334.70594 * 5 4 3 33 33 H 1.09004 * 109.46967 * 214.70222 * 5 4 3 34 34 H 1.00904 * 111.00034 * 303.95597 * 6 5 4 35 35 H 1.08999 * 109.46744 * 65.03760 * 7 6 5 36 36 H 1.09000 * 109.47110 * 305.03753 * 7 6 5 37 37 H 1.08998 * 110.92129 * 23.47006 * 10 8 7 38 38 H 1.08997 * 110.74285 * 260.22049 * 10 8 7 39 39 H 1.09003 * 110.99962 * 206.22861 * 11 10 8 40 40 H 1.09000 * 111.03850 * 82.39648 * 11 10 8 41 41 H 1.09001 * 110.36858 * 278.17674 * 12 11 10 42 42 H 1.08996 * 110.46130 * 155.89537 * 12 11 10 43 43 H 1.08999 * 109.47607 * 60.00099 * 16 14 13 44 44 H 1.08999 * 109.47519 * 299.99356 * 16 14 13 45 45 H 0.96994 * 120.00223 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5372 -0.0024 5 6 4.9210 1.3001 -0.0058 6 7 5.4039 1.4509 1.3734 7 6 6.6723 2.1909 1.4091 8 6 7.2061 2.2191 2.8427 9 1 6.4469 2.6181 3.5154 10 6 7.6018 0.7932 3.2806 11 6 8.8861 1.0329 4.1176 12 6 9.5448 2.2048 3.3480 13 7 8.4184 3.0484 2.9086 14 6 8.4872 4.3632 2.6208 15 8 7.5145 4.9397 2.1823 16 6 9.7729 5.1170 2.8438 17 16 9.5480 6.8482 2.3658 18 6 11.1562 7.4749 2.7200 19 1 11.9175 6.8174 3.1129 20 6 11.4443 8.8139 2.4951 21 7 10.5163 9.6155 2.0166 22 14 13.1495 9.4781 2.8699 23 1 14.0075 9.3476 1.6649 24 1 13.0498 10.9091 3.2541 25 1 13.7467 8.7057 3.9888 26 7 3.4763 -0.7564 0.0047 27 8 2.3094 -1.0736 0.0060 28 1 -0.3634 -1.0277 0.0054 29 1 -0.3634 0.5185 0.8873 30 1 -0.3634 0.5091 -0.8926 31 1 2.0344 2.1270 -0.0006 32 1 4.7632 2.2849 -0.4452 33 1 5.6607 0.7549 -0.5921 34 1 4.7085 1.8963 1.9533 35 1 6.5076 3.2111 1.0627 36 1 7.3980 1.6997 0.7608 37 1 7.8168 0.1660 2.4155 38 1 6.8193 0.3467 3.8940 39 1 9.5272 0.1514 4.1106 40 1 8.6390 1.3256 5.1381 41 1 10.0967 1.8299 2.4860 42 1 10.2067 2.7683 4.0055 43 1 10.5638 4.6733 2.2391 44 1 10.0476 5.0634 3.8972 45 1 10.7177 10.5511 1.8591 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671270931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:07 Heat of formation + Delta-G solvation = 2.604238 kcal Electronic energy + Delta-G solvation = -26111.156264 eV Core-core repulsion = 22257.112278 eV Total energy + Delta-G solvation = -3854.043986 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.93348 -41.25292 -38.71077 -37.44198 -34.95213 -34.60454 -34.15101 -32.94628 -31.35485 -30.05182 -28.63304 -27.68784 -27.49822 -25.16507 -23.95536 -23.53373 -22.03514 -21.23645 -20.33581 -19.47911 -18.66980 -18.21858 -18.13954 -17.51214 -16.90079 -16.75797 -16.39870 -16.06643 -15.83742 -15.55975 -15.20481 -14.87948 -14.73713 -14.58889 -14.19329 -14.05977 -13.98117 -13.94709 -13.54521 -13.40518 -13.33679 -13.16120 -13.01319 -12.90839 -12.71389 -12.62198 -12.10167 -12.06525 -11.85881 -11.73624 -11.60823 -11.25215 -11.15899 -10.94158 -10.30592 -10.25281 -9.78453 -9.56473 -8.69553 -8.36480 -6.15004 0.51973 1.14593 1.23389 1.41372 1.43620 1.53627 1.54905 2.04179 2.24103 2.25700 2.97660 3.01169 3.20108 3.27637 3.52673 3.60040 3.65434 3.86227 3.95942 4.11863 4.15948 4.19898 4.25200 4.28028 4.30850 4.41173 4.45538 4.53357 4.59604 4.64395 4.72857 4.74879 4.85053 4.91728 4.98847 5.00494 5.04211 5.14609 5.26113 5.34581 5.39959 5.41546 5.72009 6.16335 6.18004 6.39242 7.04690 7.09875 7.31660 8.72787 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018516 B = 0.002003 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.823820 B =13977.762705 C =15183.180129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.025 4.025 3 C -0.244 4.244 4 C 0.012 3.988 5 C 0.140 3.860 6 N -0.670 5.670 7 C 0.059 3.941 8 C 0.140 3.860 9 H 0.063 0.937 10 C -0.101 4.101 11 C -0.124 4.124 12 C 0.088 3.912 13 N -0.613 5.613 14 C 0.547 3.453 15 O -0.561 6.561 16 C -0.121 4.121 17 S -0.148 6.148 18 C -0.547 4.547 19 H 0.082 0.918 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.268 1.268 24 H -0.277 1.277 25 H -0.258 1.258 26 N -0.381 5.381 27 O 0.088 5.912 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.188 0.812 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.346 0.654 35 H 0.022 0.978 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.110 0.890 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.278 -24.091 0.341 28.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.089 4.089 3 C -0.266 4.266 4 C -0.146 4.146 5 C 0.011 3.989 6 N -0.303 5.303 7 C -0.071 4.071 8 C 0.037 3.963 9 H 0.081 0.919 10 C -0.139 4.139 11 C -0.162 4.162 12 C -0.034 4.034 13 N -0.348 5.348 14 C 0.335 3.665 15 O -0.439 6.439 16 C -0.272 4.272 17 S 0.079 5.921 18 C -0.694 4.694 19 H 0.100 0.900 20 C -0.191 4.191 21 N -0.547 5.547 22 Si 0.821 3.179 23 H -0.193 1.193 24 H -0.202 1.202 25 H -0.182 1.182 26 N -0.086 5.086 27 O 0.022 5.978 28 H 0.113 0.887 29 H 0.125 0.875 30 H 0.125 0.875 31 H 0.205 0.795 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.163 0.837 35 H 0.040 0.960 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.129 0.871 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.581 -24.658 -0.364 28.649 hybrid contribution 1.326 1.988 0.211 2.399 sum -13.255 -22.670 -0.154 26.261 Atomic orbital electron populations 1.20583 0.80874 1.05959 1.05656 1.25251 0.97959 0.85144 1.00506 1.22729 0.90700 1.02297 1.10873 1.23550 0.97592 0.90068 1.03421 1.20098 0.90397 0.97454 0.90987 1.60357 1.05601 1.54754 1.09557 1.22163 0.91792 0.95819 0.97370 1.21552 0.86907 0.92298 0.95582 0.91923 1.22505 0.98233 0.92537 1.00631 1.22824 0.96739 0.97858 0.98755 1.22674 0.88841 0.92239 0.99604 1.48534 1.12183 1.06875 1.67252 1.19762 0.88984 0.81043 0.76708 1.90662 1.39120 1.68396 1.45709 1.23320 0.98517 0.99548 1.05825 1.85533 1.19674 1.01239 1.85649 1.23192 0.97568 0.98170 1.50507 0.89971 1.26135 1.02914 0.95994 0.94082 1.70180 1.35624 1.05977 1.42949 0.84946 0.76493 0.77423 0.79079 1.19283 1.20222 1.18172 1.73844 0.97586 1.17135 1.20020 1.84799 1.11291 1.34243 1.67453 0.88744 0.87549 0.87469 0.79512 0.92240 0.89640 0.83651 0.95982 0.90680 0.89945 0.89007 0.87119 0.90243 0.90036 0.89804 0.87742 0.87675 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.45 71.24 0.74 0.40 16 2 C -0.03 -0.36 7.49 25.04 0.19 -0.17 16 3 C -0.24 -4.02 11.06 22.40 0.25 -3.77 16 4 C 0.01 0.27 6.84 43.58 0.30 0.57 16 5 C 0.14 2.98 6.27 85.56 0.54 3.52 16 6 N -0.67 -14.59 6.25 -517.94 -3.24 -17.83 16 7 C 0.06 1.49 5.07 86.30 0.44 1.93 16 8 C 0.14 3.38 3.13 45.34 0.14 3.52 16 9 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 10 C -0.10 -1.68 6.27 31.78 0.20 -1.48 16 11 C -0.12 -1.72 7.08 31.98 0.23 -1.49 16 12 C 0.09 1.72 6.74 86.85 0.59 2.30 16 13 N -0.61 -17.28 3.07 -788.07 -2.42 -19.70 16 14 C 0.55 21.20 7.69 87.66 0.67 21.88 16 15 O -0.56 -26.35 14.66 -3.02 -0.04 -26.40 16 16 C -0.12 -4.98 5.09 71.24 0.36 -4.61 16 17 S -0.15 -8.32 20.57 -56.49 -1.16 -9.49 16 18 C -0.55 -31.42 9.50 67.95 0.65 -30.77 16 19 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 20 C 0.01 0.77 5.49 84.86 0.47 1.24 16 21 N -0.91 -56.10 13.22 21.65 0.29 -55.81 16 22 Si 1.00 43.65 29.55 68.60 2.03 45.68 16 23 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 24 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 25 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 26 N -0.38 -9.27 12.07 -49.57 -0.60 -9.86 16 27 O 0.09 1.81 11.20 71.69 0.80 2.61 16 28 H 0.09 0.26 8.14 -2.38 -0.02 0.24 16 29 H 0.11 0.23 8.14 -2.38 -0.02 0.21 16 30 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.19 2.26 8.06 -2.91 -0.02 2.24 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.35 7.31 8.78 -89.69 -0.79 6.52 16 35 H 0.02 0.72 6.56 -2.39 -0.02 0.70 16 36 H 0.07 1.86 8.02 -2.39 -0.02 1.85 16 37 H 0.08 1.36 7.78 -2.39 -0.02 1.34 16 38 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.08 1.59 7.47 -2.39 -0.02 1.57 16 43 H 0.10 3.93 8.14 -2.40 -0.02 3.91 16 44 H 0.11 3.96 7.95 -2.40 -0.02 3.94 16 45 H 0.27 15.49 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -79.56 390.35 1.62 -77.93 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.21 Total: 19.82 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 5.75 Total: -6.96 kcal Atomic # 7 Polarization: -97.24 SS G_CDS: -5.96 Total: -103.21 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: 0.76 Total: -23.79 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.16 Total: -9.49 kcal Total: -79.56 1.62 -77.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671270931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.536 kcal (2) G-P(sol) polarization free energy of solvation -79.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds