Wall clock time and date at job start Sat Apr 11 2020 05:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30174 * 126.80276 * 2 1 4 4 O 1.20919 * 111.60376 * 179.97438 * 3 2 1 5 5 C 1.34035 * 111.56806 * 359.76448 * 4 3 2 6 6 C 1.35447 * 106.44763 * 0.37757 * 5 4 3 7 7 C 1.50699 * 128.00803 * 179.91190 * 6 5 4 8 8 N 1.46906 * 109.46990 * 259.68240 * 7 6 5 9 9 C 1.46902 * 110.99573 * 180.02562 * 8 7 6 10 10 C 1.53008 * 109.46622 * 179.97438 * 9 8 7 11 11 C 1.53786 * 113.61376 * 274.13482 * 10 9 8 12 12 C 1.53956 * 87.01734 * 220.04986 * 11 10 9 13 13 N 1.46496 * 113.53559 * 270.81257 * 12 11 10 14 14 C 1.34783 * 119.99940 * 252.49106 * 13 12 11 15 15 O 1.21285 * 119.99687 * 0.02562 * 14 13 12 16 16 C 1.50696 * 119.99959 * 180.02562 * 14 13 12 17 17 S 1.81003 * 109.46849 * 180.02562 * 16 14 13 18 18 C 1.76199 * 99.99863 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00051 * 0.02562 * 18 17 16 20 20 C 1.38802 * 120.00257 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99607 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00144 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47535 * 60.00078 * 22 20 18 24 24 H 1.48506 * 109.47121 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47215 * 299.99795 * 22 20 18 26 26 C 1.53778 * 87.11368 * 25.36539 * 12 11 10 27 27 H 1.09005 * 109.46701 * 270.02413 * 1 2 3 28 28 H 1.08997 * 109.47091 * 30.01832 * 1 2 3 29 29 H 1.08995 * 109.47344 * 150.02290 * 1 2 3 30 30 H 1.08005 * 126.77757 * 180.29173 * 5 4 3 31 31 H 1.09002 * 109.47064 * 139.68517 * 7 6 5 32 32 H 1.09000 * 109.47099 * 19.68243 * 7 6 5 33 33 H 1.00896 * 111.00309 * 56.04484 * 8 7 6 34 34 H 1.08990 * 109.47358 * 299.99539 * 9 8 7 35 35 H 1.09004 * 109.47457 * 60.00221 * 9 8 7 36 36 H 1.08994 * 112.85237 * 45.33193 * 10 9 8 37 37 H 1.09000 * 113.61298 * 334.56770 * 11 10 9 38 38 H 1.08998 * 113.60893 * 105.47080 * 11 10 9 39 39 H 1.09006 * 113.74118 * 139.94432 * 12 11 10 40 40 H 0.96994 * 120.00415 * 72.50110 * 13 12 11 41 41 H 1.08998 * 109.47024 * 300.00417 * 16 14 13 42 42 H 1.09000 * 109.46914 * 60.00689 * 16 14 13 43 43 H 0.96999 * 119.99832 * 180.02562 * 21 20 18 44 44 H 1.08998 * 113.61648 * 220.08766 * 26 12 11 45 45 H 1.09005 * 113.61549 * 89.18176 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 0.0005 5 6 3.6024 -0.6068 0.0060 6 6 2.3539 -1.1320 0.0006 7 6 1.9591 -2.5864 0.0016 8 7 1.5985 -2.9968 -1.3621 9 6 1.2066 -4.4120 -1.3996 10 6 0.8384 -4.8014 -2.8328 11 6 -0.6252 -4.5001 -3.1963 12 6 -0.6315 -5.8445 -3.9465 13 7 -0.2098 -5.7359 -5.3452 14 6 -1.1176 -5.8567 -6.3341 15 8 -2.2837 -6.0549 -6.0659 16 6 -0.6837 -5.7455 -7.7730 17 16 -2.1210 -5.9496 -8.8540 18 6 -1.3470 -5.7784 -10.4276 19 1 -0.2831 -5.6033 -10.4899 20 6 -2.1044 -5.8697 -11.5872 21 7 -3.4010 -6.0837 -11.5112 22 14 -1.2837 -5.6889 -13.2555 23 1 -0.2522 -6.7448 -13.4168 24 1 -2.3037 -5.8250 -14.3262 25 1 -0.6431 -4.3525 -13.3498 26 6 0.4928 -6.2909 -2.9970 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3634 -0.8901 -0.5134 30 1 4.5339 -1.1534 0.0121 31 1 1.1042 -2.7303 0.6623 32 1 2.7959 -3.1898 0.3533 33 1 2.3528 -2.8129 -2.0065 34 1 2.0378 -5.0284 -1.0575 35 1 0.3463 -4.5683 -0.7487 36 1 1.5550 -4.4358 -3.5681 37 1 -1.2932 -4.4775 -2.3352 38 1 -0.7438 -3.6347 -3.8482 39 1 -1.5554 -6.4102 -3.8256 40 1 0.7228 -5.5772 -5.5597 41 1 -0.2375 -4.7657 -7.9432 42 1 0.0495 -6.5217 -7.9923 43 1 -3.9302 -6.1479 -12.3216 44 1 1.2754 -6.8691 -3.4882 45 1 0.1310 -6.7587 -2.0813 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674520389.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:22 Heat of formation + Delta-G solvation = 39.500896 kcal Electronic energy + Delta-G solvation = -25432.543857 eV Core-core repulsion = 21580.099830 eV Total energy + Delta-G solvation = -3852.444027 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.30291 -40.17297 -38.30289 -36.88057 -34.76443 -33.14219 -32.42441 -32.19586 -29.46583 -29.00461 -28.01456 -25.88465 -25.51794 -25.13034 -22.39446 -21.87164 -21.67848 -20.79051 -19.31310 -17.95512 -17.86950 -17.80624 -16.56353 -16.19842 -16.00844 -15.43131 -15.30997 -14.86591 -14.80134 -14.74715 -14.40710 -13.92230 -13.80759 -13.60552 -13.27770 -13.13904 -12.94250 -12.80217 -12.64440 -12.55236 -12.32033 -12.21838 -11.71868 -11.45011 -11.16069 -11.04181 -11.03667 -10.76709 -10.66006 -10.40259 -10.19182 -9.92543 -9.81450 -9.39955 -9.05904 -8.91716 -8.82159 -8.23723 -6.49608 -6.21134 -3.91764 1.07542 1.80077 2.85268 3.02411 3.07620 3.23733 3.27745 3.31184 3.63723 3.70685 3.89395 4.13811 4.20875 4.33418 4.34864 4.43379 4.62797 4.66203 4.77463 4.95374 5.07315 5.08891 5.13832 5.14438 5.18140 5.19722 5.20711 5.28208 5.41556 5.48899 5.50832 5.56726 5.58492 5.81648 5.83483 5.88429 5.95479 5.99029 6.11013 6.14450 6.48418 6.73471 6.85817 7.59553 7.72204 7.91049 8.35334 8.62450 9.23956 10.86221 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015319 B = 0.001715 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.304464 B =16327.074163 C =17243.509288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.038 3.962 3 N -0.370 5.370 4 O 0.097 5.903 5 C -0.056 4.056 6 C -0.198 4.198 7 C 0.137 3.863 8 N -0.683 5.683 9 C 0.070 3.930 10 C -0.108 4.108 11 C -0.136 4.136 12 C 0.121 3.879 13 N -0.721 5.721 14 C 0.534 3.466 15 O -0.516 6.516 16 C -0.154 4.154 17 S -0.059 6.059 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C -0.141 4.141 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.214 0.786 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.343 0.657 34 H 0.031 0.969 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.072 0.928 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.632 5.681 27.195 31.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.121 4.121 3 N -0.076 5.076 4 O 0.033 5.967 5 C -0.139 4.139 6 C -0.203 4.203 7 C 0.008 3.992 8 N -0.314 5.314 9 C -0.058 4.058 10 C -0.126 4.126 11 C -0.175 4.175 12 C 0.015 3.985 13 N -0.374 5.374 14 C 0.321 3.679 15 O -0.390 6.390 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.180 4.180 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.110 0.890 30 H 0.230 0.770 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.161 0.839 34 H 0.049 0.951 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.119 0.881 40 H 0.231 0.769 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.091 0.909 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.626 6.865 27.586 31.105 hybrid contribution 3.330 -0.828 -1.390 3.702 sum 15.955 6.037 26.196 31.261 Atomic orbital electron populations 1.20209 0.85742 1.04526 1.03103 1.23539 0.99197 0.88017 1.01394 1.73882 0.89395 1.24294 1.20014 1.84836 1.21705 1.22816 1.67352 1.25830 1.00624 0.84012 1.03408 1.21183 0.92130 0.97506 1.09452 1.20082 0.99909 0.87699 0.91548 1.60418 1.44608 1.19883 1.06515 1.21996 0.99814 0.86955 0.97058 1.22574 0.98047 0.95952 0.96067 1.23413 0.95456 0.98318 1.00319 1.21786 0.98573 0.97417 0.80744 1.45694 1.11357 1.75540 1.04839 1.20321 0.85662 0.75158 0.86802 1.90699 1.17730 1.46510 1.84052 1.23533 1.07116 1.04914 0.94862 1.85399 1.06028 1.94304 0.97540 1.22828 0.96700 1.57352 0.91577 0.90991 1.24995 0.94839 0.94569 0.99197 1.70008 1.05140 1.45762 1.29355 0.86224 0.78894 0.78821 0.81553 1.19951 1.20809 1.19942 1.23350 0.98779 0.95931 0.99943 0.90487 0.90619 0.88999 0.76991 0.89527 0.93906 0.83921 0.95079 0.90552 0.89315 0.89419 0.90897 0.88083 0.76906 0.89233 0.89248 0.92127 0.90904 0.88899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.39 36.01 0.37 -0.18 16 2 C 0.04 0.34 7.33 -82.10 -0.60 -0.27 16 3 N -0.37 -3.88 12.07 33.42 0.40 -3.48 16 4 O 0.10 0.84 11.20 17.19 0.19 1.03 16 5 C -0.06 -0.31 12.26 29.74 0.36 0.05 16 6 C -0.20 -1.33 5.84 -104.42 -0.61 -1.94 16 7 C 0.14 0.70 6.17 -4.97 -0.03 0.67 16 8 N -0.68 -4.04 6.49 -115.05 -0.75 -4.79 16 9 C 0.07 0.39 5.51 -3.82 -0.02 0.37 16 10 C -0.11 -0.74 3.77 -89.80 -0.34 -1.08 16 11 C -0.14 -1.29 7.44 -25.82 -0.19 -1.48 16 12 C 0.12 1.34 4.33 -67.03 -0.29 1.05 16 13 N -0.72 -9.32 5.26 -52.93 -0.28 -9.60 16 14 C 0.53 9.86 7.85 -10.98 -0.09 9.78 16 15 O -0.52 -11.68 15.46 5.55 0.09 -11.59 16 16 C -0.15 -3.08 6.16 36.00 0.22 -2.86 16 17 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 18 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 19 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 22 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 C -0.14 -1.04 7.39 -25.92 -0.19 -1.23 16 27 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.21 0.30 8.06 -52.48 -0.42 -0.12 16 31 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.34 1.96 8.72 -39.29 -0.34 1.62 16 34 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 35 H 0.08 0.43 7.87 -51.93 -0.41 0.02 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.77 7.92 -51.93 -0.41 0.36 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.10 1.34 7.46 -51.93 -0.39 0.95 16 40 H 0.40 4.00 8.70 -40.82 -0.36 3.65 16 41 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 42 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.09 0.57 8.10 -51.93 -0.42 0.15 16 LS Contribution 397.09 15.07 5.98 5.98 Total: -1.00 -35.79 397.09 -9.01 -44.80 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -6.94 Total: 0.65 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -1.20 Total: -10.11 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.11 Total: -43.32 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.28 Total: -10.56 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.79 -9.01 -44.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674520389.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.296 kcal (2) G-P(sol) polarization free energy of solvation -35.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds