Wall clock time and date at job start Sat Apr 11 2020 05:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33817 * 122.45200 * 2 1 4 4 S 1.70622 * 110.95370 * 179.74487 * 3 2 1 5 5 C 1.75833 * 91.56400 * 0.35548 * 4 3 2 6 6 C 1.46578 * 125.45949 * 179.91595 * 5 4 3 7 7 O 1.21702 * 120.00328 * 179.69791 * 6 5 4 8 8 N 1.34782 * 119.99930 * 359.69010 * 6 5 4 9 9 C 1.46496 * 120.00190 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47051 * 325.00055 * 9 8 6 11 11 C 1.53002 * 109.47291 * 85.00024 * 9 8 6 12 12 C 1.52999 * 109.47535 * 205.00315 * 9 8 6 13 13 H 1.09001 * 109.47362 * 64.99309 * 12 9 8 14 14 C 1.53006 * 109.46623 * 304.99861 * 12 9 8 15 15 N 1.46898 * 109.47548 * 185.00048 * 12 9 8 16 16 C 1.46900 * 110.99922 * 204.99872 * 15 12 9 17 17 C 1.50704 * 109.46782 * 179.97438 * 16 15 12 18 18 O 1.21294 * 120.00249 * 359.97438 * 17 16 15 19 19 N 1.34772 * 119.99818 * 179.97438 * 17 16 15 20 20 C 1.37100 * 120.00065 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99863 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00027 * 180.02562 * 20 19 17 23 23 N 1.31413 * 119.99713 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99836 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47470 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47051 * 119.99844 * 24 22 20 27 27 H 1.48503 * 109.47130 * 239.99985 * 24 22 20 28 28 C 1.36651 * 109.08113 * 359.64657 * 5 4 3 29 29 H 1.08996 * 109.47198 * 269.97872 * 1 2 3 30 30 H 1.09002 * 109.46807 * 29.97548 * 1 2 3 31 31 H 1.08993 * 109.46910 * 149.97576 * 1 2 3 32 32 H 1.07997 * 124.52275 * 0.05512 * 3 2 1 33 33 H 0.97000 * 119.99983 * 0.02562 * 8 6 5 34 34 H 1.09000 * 109.47048 * 60.00029 * 11 9 8 35 35 H 1.08994 * 109.47199 * 180.02562 * 11 9 8 36 36 H 1.09001 * 109.46743 * 300.00298 * 11 9 8 37 37 H 1.09001 * 109.47002 * 179.97438 * 14 12 9 38 38 H 1.08993 * 109.46955 * 300.00075 * 14 12 9 39 39 H 1.09000 * 109.47050 * 59.99904 * 14 12 9 40 40 H 1.00893 * 111.00120 * 81.04124 * 15 12 9 41 41 H 1.08996 * 109.46839 * 299.99510 * 16 15 12 42 42 H 1.09003 * 109.47177 * 60.00055 * 16 15 12 43 43 H 0.97002 * 120.00090 * 359.97438 * 19 17 16 44 44 H 0.97005 * 119.99207 * 180.02562 * 23 22 20 45 45 H 1.08000 * 123.35064 * 180.28333 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 16 3.8970 0.7891 0.0071 5 6 3.5937 -0.9429 -0.0008 6 6 4.6230 -1.9864 -0.0013 7 8 4.3001 -3.1598 -0.0015 8 7 5.9273 -1.6465 -0.0016 9 6 6.9561 -2.6894 -0.0026 10 1 6.6122 -3.5396 0.5864 11 6 7.2242 -3.1400 -1.4400 12 6 8.2452 -2.1348 0.6068 13 1 8.0774 -1.8963 1.6571 14 6 8.6602 -0.8678 -0.1438 15 7 9.3108 -3.1400 0.4971 16 6 10.3337 -2.9379 1.5319 17 6 11.4073 -3.9857 1.3883 18 8 11.3279 -4.8191 0.5106 19 7 12.4557 -3.9967 2.2351 20 6 13.4327 -4.9496 2.1041 21 1 13.3620 -5.6917 1.3226 22 6 14.5134 -4.9612 2.9775 23 7 14.5991 -4.0585 3.9287 24 14 15.8441 -6.2599 2.7995 25 1 15.5151 -7.1529 1.6596 26 1 17.1505 -5.5992 2.5502 27 1 15.9246 -7.0606 4.0476 28 6 2.2446 -1.1601 -0.0004 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8897 -0.5142 32 1 1.8026 2.1231 0.0009 33 1 6.1847 -0.7113 -0.0012 34 1 7.5681 -2.2898 -2.0291 35 1 7.9893 -3.9162 -1.4407 36 1 6.3057 -3.5351 -1.8742 37 1 9.5784 -0.4724 0.2906 38 1 8.8280 -1.1062 -1.1940 39 1 7.8695 -0.1219 -0.0624 40 1 9.7219 -3.1321 -0.4242 41 1 10.7745 -1.9476 1.4184 42 1 9.8751 -3.0208 2.5173 43 1 12.5195 -3.3300 2.9367 44 1 15.3538 -4.0665 4.5382 45 1 1.8018 -2.1452 -0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674661672.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:27 Heat of formation + Delta-G solvation = -68.870513 kcal Electronic energy + Delta-G solvation = -26055.950830 eV Core-core repulsion = 22198.807466 eV Total energy + Delta-G solvation = -3857.143364 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.17595 -40.20180 -39.24176 -38.37901 -36.06377 -35.41752 -33.28634 -32.68121 -31.44433 -30.06440 -28.68793 -27.99257 -26.26058 -25.89532 -24.49215 -21.86504 -21.15922 -20.93770 -19.94874 -19.89503 -19.50715 -17.81895 -17.27048 -17.09803 -16.84410 -16.43238 -16.25874 -16.13954 -15.65715 -15.57262 -15.18309 -14.79029 -14.72073 -14.68382 -14.15528 -14.05708 -13.90410 -13.51087 -13.35514 -13.22446 -13.14066 -13.06282 -12.90038 -12.88632 -12.79669 -12.57930 -12.39775 -12.11493 -11.95678 -11.88351 -11.85250 -11.50644 -11.23961 -10.39211 -10.27291 -10.00448 -9.83683 -9.34633 -9.31733 -8.46421 -5.94756 -0.52498 0.47227 0.90716 1.33410 1.36868 1.42344 1.56343 1.93225 2.06446 2.10992 2.30333 2.97436 3.21211 3.53750 3.65433 3.79458 3.88506 4.06631 4.18191 4.20518 4.29802 4.38977 4.42374 4.46718 4.52512 4.62257 4.68719 4.69832 4.81623 4.84874 4.87895 4.94708 5.00697 5.05651 5.18516 5.37574 5.39700 5.40968 5.42261 5.47005 5.88459 6.09386 6.37579 6.40509 6.60980 7.05995 7.13652 7.57390 8.12908 8.71123 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032129 B = 0.001745 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.273816 B =16040.818808 C =16315.341321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.131 4.131 3 C -0.226 4.226 4 S 0.244 5.756 5 C -0.298 4.298 6 C 0.587 3.413 7 O -0.574 6.574 8 N -0.706 5.706 9 C 0.160 3.840 10 H 0.067 0.933 11 C -0.156 4.156 12 C 0.084 3.916 13 H 0.091 0.909 14 C -0.186 4.186 15 N -0.675 5.675 16 C 0.067 3.933 17 C 0.437 3.563 18 O -0.623 6.623 19 N -0.573 5.573 20 C -0.333 4.333 21 H 0.078 0.922 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.992 3.008 25 H -0.274 1.274 26 H -0.270 1.270 27 H -0.272 1.272 28 C -0.060 4.060 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.198 0.802 33 H 0.408 0.592 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.042 0.958 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.350 0.650 41 H 0.074 0.926 42 H 0.102 0.898 43 H 0.397 0.603 44 H 0.277 0.723 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.848 19.178 -6.591 32.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.143 4.143 3 C -0.363 4.363 4 S 0.513 5.487 5 C -0.418 4.418 6 C 0.375 3.625 7 O -0.455 6.455 8 N -0.360 5.360 9 C 0.055 3.945 10 H 0.085 0.915 11 C -0.215 4.215 12 C -0.027 4.027 13 H 0.109 0.891 14 C -0.244 4.244 15 N -0.308 5.308 16 C -0.065 4.065 17 C 0.225 3.775 18 O -0.509 6.509 19 N -0.211 5.211 20 C -0.463 4.463 21 H 0.096 0.904 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.816 3.184 25 H -0.199 1.199 26 H -0.195 1.195 27 H -0.197 1.197 28 C -0.094 4.094 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.215 0.785 33 H 0.246 0.754 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.170 0.830 41 H 0.092 0.908 42 H 0.120 0.880 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -23.942 18.280 -6.650 30.848 hybrid contribution 0.045 -0.409 0.102 0.424 sum -23.897 17.872 -6.548 30.550 Atomic orbital electron populations 1.20572 0.87730 1.03764 1.03180 1.18971 0.99259 0.90933 1.05156 1.25580 0.98271 1.04458 1.08011 1.82717 1.04330 0.94883 1.66770 1.24534 0.97660 0.98852 1.20784 1.17310 0.82438 0.87341 0.75444 1.90823 1.82355 1.20291 1.52027 1.45893 1.04593 1.10707 1.74760 1.20723 0.86515 0.89865 0.97433 0.91460 1.22098 1.01517 1.02223 0.95633 1.21702 0.90101 0.90121 1.00767 0.89076 1.22581 1.02815 0.97549 1.01491 1.59932 1.12699 1.50585 1.07560 1.21550 0.91281 0.95942 0.97721 1.20906 0.84359 0.88493 0.83752 1.90501 1.79315 1.43330 1.37798 1.41924 1.19999 1.29280 1.29854 1.19703 1.01287 1.09812 1.15507 0.90397 1.26015 1.00295 0.99972 0.94935 1.69677 1.32636 1.35642 1.18109 0.84881 0.77562 0.77731 0.78220 1.19911 1.19485 1.19743 1.20843 0.91267 1.00611 0.96715 0.90456 0.89835 0.91289 0.78474 0.75372 0.90654 0.91387 0.93854 0.91468 0.91308 0.90045 0.82986 0.90828 0.87976 0.76932 0.91330 0.84001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.75 10.13 71.24 0.72 -0.03 16 2 C -0.13 -1.68 5.78 -21.05 -0.12 -1.81 16 3 C -0.23 -2.19 10.67 66.81 0.71 -1.48 16 4 S 0.24 2.69 22.16 -56.49 -1.25 1.44 16 5 C -0.30 -5.79 6.45 24.08 0.16 -5.64 16 6 C 0.59 14.78 7.75 86.42 0.67 15.45 16 7 O -0.57 -19.56 16.50 -4.36 -0.07 -19.63 16 8 N -0.71 -14.24 4.98 -446.60 -2.23 -16.47 16 9 C 0.16 3.86 2.63 44.99 0.12 3.98 16 10 H 0.07 2.09 7.58 -2.39 -0.02 2.07 16 11 C -0.16 -3.81 8.86 71.98 0.64 -3.18 16 12 C 0.08 1.82 2.64 44.92 0.12 1.94 16 13 H 0.09 1.88 7.80 -2.39 -0.02 1.86 16 14 C -0.19 -2.91 8.68 71.98 0.62 -2.28 16 15 N -0.67 -20.31 5.23 -495.56 -2.59 -22.90 16 16 C 0.07 2.21 5.97 85.56 0.51 2.72 16 17 C 0.44 20.60 7.82 87.66 0.69 21.28 16 18 O -0.62 -34.50 15.78 -3.07 -0.05 -34.55 16 19 N -0.57 -29.24 5.29 -306.98 -1.62 -30.86 16 20 C -0.33 -19.00 9.68 84.04 0.81 -18.18 16 21 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 22 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 23 N -0.92 -49.45 13.05 21.66 0.28 -49.17 16 24 Si 0.99 43.12 29.55 68.60 2.03 45.15 16 25 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 27 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 28 C -0.06 -1.10 9.80 21.72 0.21 -0.89 16 29 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.08 0.40 8.12 -2.39 -0.02 0.38 16 31 H 0.07 0.56 8.13 -2.39 -0.02 0.54 16 32 H 0.20 0.71 8.06 -2.91 -0.02 0.69 16 33 H 0.41 5.73 5.69 -92.71 -0.53 5.20 16 34 H 0.07 1.48 6.56 -2.39 -0.02 1.46 16 35 H 0.07 1.88 7.13 -2.39 -0.02 1.86 16 36 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.07 1.07 7.45 -2.39 -0.02 1.05 16 38 H 0.07 1.09 6.55 -2.39 -0.02 1.07 16 39 H 0.08 0.85 6.29 -2.39 -0.02 0.84 16 40 H 0.35 10.94 7.39 -89.70 -0.66 10.28 16 41 H 0.07 2.02 7.44 -2.39 -0.02 2.01 16 42 H 0.10 3.07 8.06 -2.39 -0.02 3.05 16 43 H 0.40 19.10 7.90 -92.71 -0.73 18.37 16 44 H 0.28 13.92 8.31 -92.70 -0.77 13.15 16 45 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -74.70 386.17 -0.05 -74.75 By element: Atomic # 1 Polarization: 41.42 SS G_CDS: -0.87 Total: 40.55 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 6.33 Total: 11.69 kcal Atomic # 7 Polarization: -113.24 SS G_CDS: -6.16 Total: -119.40 kcal Atomic # 8 Polarization: -54.05 SS G_CDS: -0.12 Total: -54.17 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: 2.69 SS G_CDS: -1.25 Total: 1.44 kcal Total: -74.70 -0.05 -74.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674661672.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.879 kcal (2) G-P(sol) polarization free energy of solvation -74.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds