Wall clock time and date at job start Sat Apr 11 2020 05:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33814 * 122.45084 * 2 1 4 4 S 1.70615 * 110.95565 * 179.74744 * 3 2 1 5 5 C 1.75837 * 91.56252 * 0.35634 * 4 3 2 6 6 C 1.46582 * 125.45842 * 179.91260 * 5 4 3 7 7 O 1.21697 * 119.99801 * 179.69474 * 6 5 4 8 8 N 1.34777 * 119.99792 * 359.69424 * 6 5 4 9 9 C 1.46507 * 119.99542 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.46822 * 35.00535 * 9 8 6 11 11 C 1.52997 * 109.47235 * 275.00190 * 9 8 6 12 12 C 1.53002 * 109.46688 * 155.00029 * 9 8 6 13 13 H 1.09002 * 109.47070 * 60.00104 * 12 9 8 14 14 C 1.53000 * 109.47233 * 299.99730 * 12 9 8 15 15 N 1.46901 * 109.46860 * 180.02562 * 12 9 8 16 16 C 1.46903 * 110.99880 * 205.00557 * 15 12 9 17 17 C 1.50697 * 109.46959 * 180.02562 * 16 15 12 18 18 O 1.21293 * 120.00499 * 359.97438 * 17 16 15 19 19 N 1.34782 * 119.99745 * 179.97438 * 17 16 15 20 20 C 1.37102 * 120.00042 * 179.97438 * 19 17 16 21 21 H 1.08002 * 119.99673 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00330 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99357 * 0.02562 * 22 20 19 24 24 Si 1.86791 * 120.00081 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47219 * 90.00465 * 24 22 20 26 26 H 1.48503 * 109.47268 * 210.00097 * 24 22 20 27 27 H 1.48501 * 109.47353 * 330.00067 * 24 22 20 28 28 C 1.36642 * 109.07838 * 359.65109 * 5 4 3 29 29 H 1.09003 * 109.46812 * 269.97786 * 1 2 3 30 30 H 1.09005 * 109.47484 * 29.97321 * 1 2 3 31 31 H 1.08994 * 109.47322 * 149.97334 * 1 2 3 32 32 H 1.07997 * 124.52594 * 0.06241 * 3 2 1 33 33 H 0.96997 * 120.00436 * 0.02562 * 8 6 5 34 34 H 1.08998 * 109.47171 * 59.99556 * 11 9 8 35 35 H 1.09000 * 109.47140 * 180.02562 * 11 9 8 36 36 H 1.09002 * 109.47045 * 300.00215 * 11 9 8 37 37 H 1.09001 * 109.47194 * 179.97438 * 14 12 9 38 38 H 1.08992 * 109.47399 * 300.00166 * 14 12 9 39 39 H 1.09004 * 109.46724 * 60.00652 * 14 12 9 40 40 H 1.00892 * 111.00435 * 81.04393 * 15 12 9 41 41 H 1.09003 * 109.46525 * 299.99167 * 16 15 12 42 42 H 1.08991 * 109.47692 * 59.99249 * 16 15 12 43 43 H 0.97000 * 119.99778 * 359.97438 * 19 17 16 44 44 H 0.97003 * 119.99448 * 179.97438 * 23 22 20 45 45 H 1.08010 * 123.35006 * 180.28644 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 16 3.8969 0.7892 0.0070 5 6 3.5936 -0.9428 -0.0009 6 6 4.6231 -1.9863 -0.0015 7 8 4.3000 -3.1597 -0.0017 8 7 5.9272 -1.6463 -0.0019 9 6 6.9561 -2.6894 -0.0020 10 1 6.6118 -3.5392 -0.5913 11 6 7.2250 -3.1405 1.4350 12 6 8.2448 -2.1344 -0.6120 13 1 8.5891 -1.2844 -0.0228 14 6 7.9758 -1.6833 -2.0490 15 7 9.2762 -3.1804 -0.6126 16 6 10.6224 -2.5922 -0.6129 17 6 11.6515 -3.6931 -0.6142 18 8 11.2984 -4.8535 -0.6143 19 7 12.9644 -3.3883 -0.6152 20 6 13.9007 -4.3898 -0.6158 21 1 13.5862 -5.4230 -0.6151 22 6 15.2542 -4.0756 -0.6173 23 7 15.6367 -2.8184 -0.6177 24 14 16.5298 -5.4401 -0.6189 25 1 16.8663 -5.8016 -2.0193 26 1 17.7544 -4.9738 0.0798 27 1 15.9829 -6.6298 0.0817 28 6 2.2446 -1.1600 -0.0006 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8897 -0.5142 32 1 1.8026 2.1231 0.0010 33 1 6.1847 -0.7112 -0.0014 34 1 6.3069 -3.5358 1.8696 35 1 7.9908 -3.9162 1.4350 36 1 7.5693 -2.2906 2.0243 37 1 8.8938 -1.2875 -2.4835 38 1 7.6316 -2.5332 -2.6382 39 1 7.2104 -0.9073 -2.0489 40 1 9.1553 -3.8071 -1.3940 41 1 10.7493 -1.9758 -1.5029 42 1 10.7500 -1.9761 0.2770 43 1 13.2468 -2.4603 -0.6154 44 1 16.5816 -2.5990 -0.6184 45 1 1.8018 -2.1452 -0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674661673.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:30 Heat of formation + Delta-G solvation = -48.024419 kcal Electronic energy + Delta-G solvation = -26043.208371 eV Core-core repulsion = 22186.968962 eV Total energy + Delta-G solvation = -3856.239410 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.18880 -38.71521 -38.27233 -37.11293 -34.55114 -33.81584 -31.82001 -31.23736 -30.45626 -29.57918 -28.20628 -26.34504 -25.09617 -24.18994 -23.00423 -20.90031 -20.81077 -19.41693 -19.22916 -18.65833 -17.90487 -16.64969 -16.33672 -15.89235 -15.40115 -15.25071 -15.05650 -14.57283 -14.29481 -14.20882 -13.88514 -13.85653 -13.76181 -13.56607 -13.49519 -13.06578 -12.62520 -12.49157 -12.41890 -12.30646 -12.19427 -12.08396 -11.59749 -11.55365 -11.46729 -11.35052 -11.28269 -11.03770 -10.70102 -10.39228 -10.24693 -10.21217 -9.51106 -9.39428 -9.17488 -8.82115 -8.47442 -8.07330 -7.96131 -6.42083 -3.82756 0.13418 1.07382 1.47429 1.97428 2.83931 2.96979 3.17991 3.26800 3.33037 3.90422 4.10723 4.33365 4.42709 4.52590 4.63819 4.77411 4.88796 4.90755 5.11480 5.13398 5.17363 5.18403 5.26308 5.41967 5.45003 5.49026 5.53389 5.64516 5.68139 5.82037 5.87867 5.89170 5.98068 5.98723 6.04370 6.08713 6.23722 6.35758 6.55291 7.14468 7.24520 7.55207 7.61132 7.95095 8.06084 8.60876 9.17804 9.53906 10.05341 10.75637 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.036420 B = 0.001741 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.615442 B =16075.533834 C =16499.862456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.116 4.116 3 C -0.236 4.236 4 S 0.198 5.802 5 C -0.260 4.260 6 C 0.591 3.409 7 O -0.525 6.525 8 N -0.719 5.719 9 C 0.154 3.846 10 H 0.092 0.908 11 C -0.153 4.153 12 C 0.077 3.923 13 H 0.082 0.918 14 C -0.185 4.185 15 N -0.657 5.657 16 C 0.053 3.947 17 C 0.440 3.560 18 O -0.582 6.582 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 C -0.054 4.054 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.168 0.832 33 H 0.394 0.606 34 H 0.051 0.949 35 H 0.088 0.912 36 H 0.050 0.950 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.353 0.647 41 H 0.044 0.956 42 H 0.086 0.914 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.313 13.817 0.532 29.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.130 4.130 3 C -0.373 4.373 4 S 0.466 5.534 5 C -0.381 4.381 6 C 0.376 3.624 7 O -0.403 6.403 8 N -0.370 5.370 9 C 0.050 3.950 10 H 0.110 0.890 11 C -0.211 4.211 12 C -0.034 4.034 13 H 0.100 0.900 14 C -0.244 4.244 15 N -0.289 5.289 16 C -0.080 4.080 17 C 0.226 3.774 18 O -0.466 6.466 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.087 4.087 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.186 0.814 33 H 0.228 0.772 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.174 0.826 41 H 0.062 0.938 42 H 0.104 0.896 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -25.217 13.073 1.226 28.431 hybrid contribution -0.247 0.181 -0.939 0.988 sum -25.465 13.254 0.287 28.709 Atomic orbital electron populations 1.20524 0.89306 1.02980 1.02536 1.18804 0.98039 0.91495 1.04628 1.25134 0.98461 1.03404 1.10341 1.82995 1.04171 0.98265 1.67958 1.24669 0.98089 0.97179 1.18127 1.16889 0.81628 0.87366 0.76477 1.90851 1.81563 1.18117 1.49785 1.45955 1.05421 1.10286 1.75346 1.20943 0.85759 0.90017 0.98277 0.88985 1.22047 1.02224 1.02297 0.94556 1.21754 0.91899 0.94553 0.95231 0.90015 1.22549 1.02022 1.02084 0.97752 1.59987 1.00390 1.17045 1.51513 1.21691 0.88748 0.96369 1.01193 1.19794 0.83343 0.89749 0.84530 1.90535 1.80311 1.20447 1.55285 1.41859 1.04072 1.09705 1.64412 1.19711 0.85635 0.89992 1.47543 0.87901 1.25256 0.98097 0.97258 0.97323 1.69613 1.17280 1.16789 1.50664 0.85854 0.79489 0.80570 0.78363 1.20445 1.20939 1.19391 1.20686 0.91030 1.00051 0.96978 0.91049 0.91463 0.91176 0.81439 0.77171 0.93005 0.89294 0.93114 0.92093 0.92060 0.92320 0.82647 0.93765 0.89567 0.77494 0.91900 0.82859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.46 10.13 36.00 0.36 -0.10 16 2 C -0.12 -0.84 5.78 -106.46 -0.62 -1.46 16 3 C -0.24 -1.50 10.67 29.18 0.31 -1.19 16 4 S 0.20 1.34 22.16 -107.50 -2.38 -1.05 16 5 C -0.26 -2.55 6.45 -36.80 -0.24 -2.79 16 6 C 0.59 7.16 7.75 -12.90 -0.10 7.06 16 7 O -0.53 -8.29 16.50 5.19 0.09 -8.21 16 8 N -0.72 -7.36 4.38 -55.14 -0.24 -7.61 16 9 C 0.15 1.85 2.34 -67.93 -0.16 1.69 16 10 H 0.09 1.28 7.58 -51.93 -0.39 0.89 16 11 C -0.15 -1.97 9.33 37.16 0.35 -1.62 16 12 C 0.08 0.88 2.22 -67.71 -0.15 0.73 16 13 H 0.08 0.86 7.80 -51.93 -0.41 0.45 16 14 C -0.19 -1.89 9.00 37.16 0.33 -1.56 16 15 N -0.66 -9.98 5.11 -107.99 -0.55 -10.53 16 16 C 0.05 0.88 5.97 -4.98 -0.03 0.85 16 17 C 0.44 10.19 7.82 -10.98 -0.09 10.10 16 18 O -0.58 -15.61 15.78 5.55 0.09 -15.52 16 19 N -0.56 -14.10 5.29 -10.96 -0.06 -14.16 16 20 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 21 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.38 13.05 55.50 0.72 -23.65 16 24 Si 0.93 21.03 29.55 -169.99 -5.02 16.00 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 C -0.05 -0.49 9.79 -40.44 -0.40 -0.89 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.25 8.12 -51.93 -0.42 -0.17 16 31 H 0.07 0.32 8.13 -51.93 -0.42 -0.11 16 32 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.39 3.12 7.50 -40.82 -0.31 2.81 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.09 1.31 7.60 -51.93 -0.39 0.92 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.63 7.45 -51.93 -0.39 0.24 16 38 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 39 H 0.06 0.51 7.45 -51.93 -0.39 0.12 16 40 H 0.35 5.71 8.17 -39.30 -0.32 5.38 16 41 H 0.04 0.67 7.44 -51.93 -0.39 0.28 16 42 H 0.09 1.32 8.05 -51.93 -0.42 0.91 16 43 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 44 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 45 H 0.15 1.38 8.06 -52.48 -0.42 0.96 16 LS Contribution 392.89 15.07 5.92 5.92 Total: -1.00 -32.85 392.89 -8.71 -41.56 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -6.61 Total: 14.38 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -0.66 Total: 2.87 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: -0.13 Total: -55.95 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: 0.17 Total: -23.73 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -2.38 Total: -1.05 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.85 -8.71 -41.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674661673.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.467 kcal (2) G-P(sol) polarization free energy of solvation -32.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds