Wall clock time and date at job start Sat Apr 11 2020 05:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.41380 * 126.80347 * 2 1 4 4 C 1.35451 * 103.98649 * 179.77327 * 3 2 1 5 5 C 1.50706 * 126.77668 * 180.22754 * 4 3 2 6 6 N 1.46895 * 109.47186 * 90.00426 * 5 4 3 7 7 C 1.46902 * 111.00059 * 180.02562 * 6 5 4 8 8 H 1.09002 * 110.63985 * 328.14184 * 7 6 5 9 9 C 1.55156 * 110.71854 * 91.47637 * 7 6 5 10 10 C 1.54904 * 101.58293 * 153.86577 * 9 7 6 11 11 N 1.47428 * 104.83086 * 322.99105 * 10 9 7 12 12 C 1.34772 * 125.65082 * 204.16175 * 11 10 9 13 13 O 1.21282 * 120.00462 * 179.97438 * 12 11 10 14 14 C 1.50705 * 119.99894 * 359.95716 * 12 11 10 15 15 S 1.81004 * 109.47269 * 179.97438 * 14 12 11 16 16 C 1.76200 * 100.00121 * 180.02562 * 15 14 12 17 17 H 1.07997 * 119.99756 * 359.97438 * 16 15 14 18 18 C 1.38797 * 119.99713 * 180.02562 * 16 15 14 19 19 N 1.31621 * 120.00243 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99633 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47107 * 89.99578 * 20 18 16 22 22 H 1.48498 * 109.47461 * 210.00030 * 20 18 16 23 23 H 1.48503 * 109.47276 * 330.00191 * 20 18 16 24 24 C 1.47020 * 108.70432 * 24.12651 * 11 10 9 25 25 H 1.08994 * 109.88414 * 239.52640 * 24 11 10 26 26 C 1.53005 * 109.88312 * 118.35498 * 24 11 10 27 27 O 1.34041 * 106.44823 * 0.22995 * 4 3 2 28 28 N 1.20916 * 111.56681 * 359.97438 * 27 4 3 29 29 H 1.08995 * 109.47264 * 89.99830 * 1 2 3 30 30 H 1.09002 * 109.46590 * 209.99262 * 1 2 3 31 31 H 1.08996 * 109.47172 * 329.99409 * 1 2 3 32 32 H 1.08002 * 128.00820 * 0.04548 * 3 2 1 33 33 H 1.09003 * 109.46799 * 210.00794 * 5 4 3 34 34 H 1.09005 * 109.46817 * 330.00360 * 5 4 3 35 35 H 1.00902 * 111.00062 * 56.04135 * 6 5 4 36 36 H 1.08997 * 111.00730 * 271.93803 * 9 7 6 37 37 H 1.08997 * 111.00580 * 35.79189 * 9 7 6 38 38 H 1.08999 * 110.37125 * 204.15644 * 10 9 7 39 39 H 1.09000 * 110.46255 * 81.87149 * 10 9 7 40 40 H 1.08998 * 109.47322 * 299.99803 * 14 12 11 41 41 H 1.09000 * 109.47177 * 60.00363 * 14 12 11 42 42 H 0.97007 * 120.00101 * 179.97438 * 19 18 16 43 43 H 1.08995 * 109.47311 * 302.19744 * 26 24 11 44 44 H 1.09004 * 109.46409 * 62.19793 * 26 24 11 45 45 H 1.08997 * 109.46982 * 182.19014 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6024 0.6068 0.0052 5 6 4.9022 1.3695 0.0123 6 7 5.3180 1.6155 1.3995 7 6 6.5840 2.3592 1.4456 8 1 7.2118 2.1025 0.5923 9 6 6.3213 3.8874 1.4987 10 6 7.6014 4.3988 2.2053 11 7 7.9192 3.3637 3.2059 12 6 8.6333 3.5537 4.3330 13 8 8.8337 2.6256 5.0876 14 6 9.1831 4.9193 4.6555 15 16 10.0873 4.8511 6.2221 16 6 10.6045 6.5306 6.3501 17 1 10.3374 7.2382 5.5792 18 6 11.3561 6.9440 7.4413 19 7 11.6821 6.0815 8.3806 20 14 11.9051 8.7244 7.5767 21 1 10.8741 9.5062 8.3054 22 1 13.1912 8.7910 8.3160 23 1 12.0863 9.2914 6.2162 24 6 7.3274 2.0901 2.7710 25 1 6.6253 1.7314 3.5236 26 6 8.4302 1.0532 2.5477 27 8 3.4538 -0.7254 0.0027 28 7 2.2869 -1.0424 -0.0027 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3632 -0.8901 0.5137 31 1 -0.3633 0.8899 0.5139 32 1 2.0710 2.1743 0.0007 33 1 5.6684 0.7865 -0.4988 34 1 4.7674 2.3217 -0.5009 35 1 5.3872 0.7509 1.9150 36 1 6.2360 4.3043 0.4953 37 1 5.4331 4.1109 2.0897 38 1 7.4089 5.3533 2.6951 39 1 8.4177 4.4981 1.4899 40 1 9.8573 5.2366 3.8600 41 1 8.3618 5.6307 4.7411 42 1 12.2077 6.3703 9.1431 43 1 9.1376 1.4287 1.8084 44 1 8.9505 0.8683 3.4875 45 1 7.9879 0.1241 2.1884 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676627788.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:37 Heat of formation + Delta-G solvation = 29.485267 kcal Electronic energy + Delta-G solvation = -26171.708175 eV Core-core repulsion = 22318.829838 eV Total energy + Delta-G solvation = -3852.878338 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.27661 -40.20111 -37.89464 -35.78884 -35.11896 -32.71280 -32.43345 -31.60262 -30.58355 -29.08059 -28.50213 -26.60176 -25.48901 -24.47254 -23.45363 -22.84538 -20.98080 -20.47461 -19.05039 -18.00371 -17.65128 -17.61265 -16.88166 -16.31627 -16.16489 -15.17616 -14.97986 -14.82699 -14.78122 -14.03886 -13.93145 -13.91912 -13.77432 -13.73808 -13.54005 -13.42392 -12.94972 -12.81159 -12.67098 -12.54248 -12.42079 -11.90859 -11.77032 -11.56253 -11.51373 -11.24327 -11.06690 -11.02383 -10.88903 -10.76294 -10.36893 -9.85903 -9.81488 -9.36021 -9.06971 -9.02919 -8.52916 -8.23475 -6.50424 -6.21894 -3.92536 1.03917 1.85164 2.62631 2.86757 3.06561 3.21982 3.24872 3.29730 3.56371 3.77701 3.82158 3.98213 4.13414 4.20562 4.36430 4.56069 4.67036 4.76386 4.84624 4.97394 4.99372 5.04298 5.08184 5.11283 5.13292 5.18286 5.25733 5.33753 5.37718 5.38651 5.48694 5.51761 5.60741 5.66237 5.72452 5.85258 5.88888 5.96381 6.13105 6.19436 6.42812 6.51613 6.74084 7.59114 7.66992 7.90248 8.34848 8.56469 9.23356 10.85509 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027777 B = 0.001811 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.791173 B =15459.422667 C =15719.896645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.012 3.988 3 C -0.208 4.208 4 C -0.031 4.031 5 C 0.142 3.858 6 N -0.674 5.674 7 C 0.078 3.922 8 H 0.070 0.930 9 C -0.121 4.121 10 C 0.100 3.900 11 N -0.620 5.620 12 C 0.550 3.450 13 O -0.513 6.513 14 C -0.147 4.147 15 S -0.060 6.060 16 C -0.535 4.535 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.137 3.863 25 H 0.082 0.918 26 C -0.166 4.166 27 O 0.098 5.902 28 N -0.365 5.365 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.172 0.828 33 H 0.058 0.942 34 H 0.108 0.892 35 H 0.351 0.649 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.268 0.732 43 H 0.057 0.943 44 H 0.077 0.923 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.288 -7.824 -22.390 29.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.146 4.146 3 C -0.230 4.230 4 C -0.094 4.094 5 C 0.012 3.988 6 N -0.307 5.307 7 C -0.032 4.032 8 H 0.088 0.912 9 C -0.160 4.160 10 C -0.024 4.024 11 N -0.358 5.358 12 C 0.339 3.661 13 O -0.387 6.387 14 C -0.297 4.297 15 S 0.166 5.834 16 C -0.684 4.684 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.197 1.197 24 C 0.032 3.968 25 H 0.100 0.900 26 C -0.224 4.224 27 O 0.031 5.969 28 N -0.070 5.070 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.190 0.810 33 H 0.076 0.924 34 H 0.126 0.874 35 H 0.170 0.830 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.096 0.904 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.442 -9.997 -20.945 29.643 hybrid contribution 0.613 2.436 -1.063 2.727 sum -17.829 -7.561 -22.008 29.315 Atomic orbital electron populations 1.20172 0.85906 1.03944 1.03345 1.23660 0.99150 0.88885 1.02934 1.22433 0.91010 1.01159 1.08433 1.24313 0.98279 0.83570 1.03284 1.20381 0.88985 0.98122 0.91277 1.60557 1.31491 1.26934 1.11709 1.22677 0.88710 0.94865 0.96988 0.91240 1.22854 0.98241 0.93675 1.01236 1.22313 0.96512 0.92535 0.91043 1.48481 1.55016 1.09846 1.22464 1.20013 0.76765 0.90650 0.78708 1.90697 1.56973 1.43609 1.47431 1.23511 1.03768 0.95653 1.06782 1.85403 1.65351 1.14500 1.18116 1.22858 1.39746 0.94901 1.10849 0.90935 1.24987 0.95208 0.98640 0.94723 1.70016 1.36017 1.34325 1.09890 0.86172 0.78153 0.82855 0.78341 1.20266 1.20747 1.19701 1.21525 0.94810 0.85529 0.94896 0.89991 1.22196 0.98880 0.97707 1.03656 1.84816 1.21720 1.22849 1.67475 1.73866 0.89284 1.24168 1.19636 0.90201 0.90540 0.89871 0.81007 0.92353 0.87404 0.82957 0.90141 0.89326 0.90040 0.91422 0.89339 0.89308 0.92179 0.92430 0.90353 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.47 36.00 0.38 -0.03 16 2 C 0.01 0.10 7.33 -82.10 -0.60 -0.50 16 3 C -0.21 -1.50 11.06 -39.38 -0.44 -1.94 16 4 C -0.03 -0.23 7.00 -35.30 -0.25 -0.47 16 5 C 0.14 0.75 6.11 -4.98 -0.03 0.72 16 6 N -0.67 -4.64 6.33 -106.05 -0.67 -5.31 16 7 C 0.08 0.58 2.81 -65.88 -0.19 0.40 16 8 H 0.07 0.45 7.53 -51.93 -0.39 0.06 16 9 C -0.12 -0.89 6.77 -24.59 -0.17 -1.06 16 10 C 0.10 0.99 6.69 -2.53 -0.02 0.97 16 11 N -0.62 -8.59 3.06 -163.02 -0.50 -9.09 16 12 C 0.55 10.42 7.66 -10.99 -0.08 10.34 16 13 O -0.51 -11.65 14.91 5.56 0.08 -11.57 16 14 C -0.15 -2.98 5.16 36.01 0.19 -2.79 16 15 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 16 C -0.54 -15.20 9.50 30.94 0.29 -14.90 16 17 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 18 C 0.07 2.10 5.49 -17.44 -0.10 2.00 16 19 N -0.87 -26.11 13.22 55.49 0.73 -25.37 16 20 Si 0.92 21.31 29.55 -169.99 -5.02 16.28 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 C 0.14 1.55 2.97 -66.95 -0.20 1.35 16 25 H 0.08 1.04 7.90 -51.93 -0.41 0.63 16 26 C -0.17 -1.89 9.09 37.16 0.34 -1.55 16 27 O 0.10 0.95 11.20 17.17 0.19 1.15 16 28 N -0.36 -3.89 12.07 33.43 0.40 -3.49 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.06 0.26 8.08 -51.93 -0.42 -0.16 16 34 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.35 2.55 8.31 -39.29 -0.33 2.22 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.81 7.48 -51.93 -0.39 0.42 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 41 H 0.09 1.68 7.85 -51.92 -0.41 1.27 16 42 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.08 1.16 6.91 -51.93 -0.36 0.80 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 390.00 15.07 5.88 5.88 Total: -1.00 -35.39 390.00 -8.88 -44.27 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -6.90 Total: -1.43 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -0.87 Total: -7.46 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: -0.03 Total: -43.26 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.28 Total: -10.42 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.39 -8.88 -44.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676627788.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.752 kcal (2) G-P(sol) polarization free energy of solvation -35.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds