Wall clock time and date at job start Sat Apr 11 2020 05:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35448 * 126.77201 * 2 1 4 4 C 1.41384 * 103.98528 * 179.74051 * 3 2 1 5 5 C 1.50699 * 126.80680 * 180.24419 * 4 3 2 6 6 N 1.46899 * 109.46863 * 95.00266 * 5 4 3 7 7 C 1.46904 * 110.99968 * 180.02562 * 6 5 4 8 8 H 1.08998 * 110.88225 * 322.56890 * 7 6 5 9 9 C 1.55160 * 111.00339 * 198.65030 * 7 6 5 10 10 C 1.54324 * 102.94022 * 206.42087 * 9 7 6 11 11 H 1.08998 * 110.01183 * 141.67851 * 10 9 7 12 12 C 1.53003 * 109.88296 * 262.77625 * 10 9 7 13 13 N 1.47024 * 107.26948 * 22.19276 * 10 9 7 14 14 C 1.34779 * 125.64854 * 181.09541 * 13 10 9 15 15 O 1.21290 * 119.99826 * 359.97438 * 14 13 10 16 16 C 1.50697 * 120.00429 * 179.97438 * 14 13 10 17 17 S 1.80998 * 109.47460 * 179.97438 * 16 14 13 18 18 C 1.76195 * 100.00178 * 179.97438 * 17 16 14 19 19 H 1.08007 * 119.99961 * 0.02562 * 18 17 16 20 20 C 1.38797 * 120.00415 * 179.97438 * 18 17 16 21 21 N 1.31640 * 119.99479 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00447 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47001 * 60.00247 * 22 20 18 24 24 H 1.48502 * 109.47458 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47269 * 300.00342 * 22 20 18 26 26 C 1.47425 * 108.70680 * 1.06008 * 13 10 9 27 27 N 1.30176 * 106.39294 * 0.22557 * 4 3 2 28 28 O 1.20926 * 111.60451 * 359.97438 * 27 4 3 29 29 H 1.09001 * 109.47036 * 90.00406 * 1 2 3 30 30 H 1.09002 * 109.46832 * 209.99998 * 1 2 3 31 31 H 1.08992 * 109.47367 * 330.00141 * 1 2 3 32 32 H 1.08002 * 128.01287 * 0.02562 * 3 2 1 33 33 H 1.08997 * 109.47075 * 214.99738 * 5 4 3 34 34 H 1.08996 * 109.46905 * 335.00435 * 5 4 3 35 35 H 1.00907 * 111.00112 * 303.95401 * 6 5 4 36 36 H 1.08995 * 110.71966 * 324.77991 * 9 7 6 37 37 H 1.08995 * 110.72137 * 88.05870 * 9 7 6 38 38 H 1.08999 * 109.47280 * 179.26197 * 12 10 9 39 39 H 1.08997 * 109.46635 * 299.26411 * 12 10 9 40 40 H 1.09001 * 109.46924 * 59.26049 * 12 10 9 41 41 H 1.09010 * 109.46576 * 299.99585 * 16 14 13 42 42 H 1.09000 * 109.47516 * 59.99483 * 16 14 13 43 43 H 0.96996 * 119.99735 * 180.02562 * 21 20 18 44 44 H 1.08999 * 110.36624 * 217.03410 * 26 13 10 45 45 H 1.08996 * 110.46377 * 94.75453 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6214 0.5374 0.0062 5 6 4.9211 1.3001 0.0140 6 7 5.3972 1.4421 1.3964 7 6 6.6649 2.1829 1.4432 8 1 7.2999 1.9200 0.5972 9 6 7.4005 1.9419 2.7879 10 6 8.2475 3.2214 2.9526 11 1 8.2627 3.5265 3.9989 12 6 9.6749 2.9671 2.4640 13 7 7.6185 4.2694 2.1354 14 6 8.0691 5.5317 1.9941 15 8 9.0766 5.8840 2.5703 16 6 7.3214 6.5054 1.1201 17 16 8.1694 8.1044 1.1356 18 6 7.1126 9.0216 0.0649 19 1 6.2445 8.5496 -0.3712 20 6 7.3949 10.3509 -0.2171 21 7 8.4527 10.9263 0.3149 22 14 6.2741 11.3236 -1.3516 23 1 4.9038 11.3613 -0.7804 24 1 6.7906 12.7090 -1.4893 25 1 6.2362 10.6738 -2.6863 26 6 6.4136 3.7106 1.4955 27 7 3.4764 -0.7563 0.0043 28 8 2.3095 -1.0736 -0.0015 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 2.0344 2.1271 0.0004 33 1 5.6636 0.7587 -0.5721 34 1 4.7652 2.2878 -0.4199 35 1 4.6990 1.8838 1.9758 36 1 6.6868 1.8440 3.6058 37 1 8.0401 1.0616 2.7252 38 1 10.2634 3.8783 2.5711 39 1 10.1256 2.1716 3.0573 40 1 9.6525 2.6702 1.4154 41 1 7.2842 6.1233 0.0998 42 1 6.3069 6.6289 1.4990 43 1 8.6498 11.8554 0.1181 44 1 6.2989 4.1108 0.4881 45 1 5.5286 3.9292 2.0929 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676709005.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:45 Heat of formation + Delta-G solvation = 28.150805 kcal Electronic energy + Delta-G solvation = -26322.507189 eV Core-core repulsion = 22469.570984 eV Total energy + Delta-G solvation = -3852.936204 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.25712 -40.20528 -37.90663 -36.08189 -34.15735 -33.41477 -32.45698 -32.19382 -29.88954 -28.74360 -28.19937 -26.17109 -25.81214 -25.49995 -23.35356 -22.48423 -21.07853 -20.40910 -19.01840 -17.98610 -17.73057 -17.53556 -16.80109 -16.45389 -15.89727 -15.11453 -14.84646 -14.81131 -14.63548 -14.31908 -14.05019 -13.96010 -13.86528 -13.71283 -13.36565 -13.13229 -13.04453 -12.92805 -12.64110 -12.49678 -12.43238 -12.07785 -11.80969 -11.59269 -11.40995 -11.13159 -11.06782 -11.05643 -10.79543 -10.78966 -10.52431 -9.85584 -9.68286 -9.42093 -9.08768 -8.90528 -8.53056 -8.26851 -6.53283 -6.24215 -3.95223 1.11713 1.81449 2.74401 2.85133 3.03725 3.20623 3.22227 3.26377 3.51044 3.69224 3.88013 4.08305 4.17283 4.30536 4.40348 4.64113 4.68583 4.76245 4.85056 4.90799 4.96298 5.02076 5.07049 5.10639 5.11901 5.13443 5.30003 5.35051 5.40591 5.46272 5.51942 5.58143 5.63363 5.67078 5.70949 5.78424 5.84828 6.06609 6.08710 6.29526 6.47584 6.55635 6.84958 7.55841 7.65200 7.95243 8.31841 8.54602 9.20674 10.83153 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009892 B = 0.002520 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2829.794042 B =11107.431268 C =13649.073228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.033 4.033 3 C -0.232 4.232 4 C 0.021 3.979 5 C 0.134 3.866 6 N -0.668 5.668 7 C 0.077 3.923 8 H 0.099 0.901 9 C -0.114 4.114 10 C 0.135 3.865 11 H 0.075 0.925 12 C -0.164 4.164 13 N -0.619 5.619 14 C 0.549 3.451 15 O -0.511 6.511 16 C -0.147 4.147 17 S -0.059 6.059 18 C -0.536 4.536 19 H 0.071 0.929 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.282 1.282 25 H -0.274 1.274 26 C 0.073 3.927 27 N -0.347 5.347 28 O 0.100 5.900 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.171 0.829 33 H 0.093 0.907 34 H 0.061 0.939 35 H 0.347 0.653 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.269 0.731 44 H 0.077 0.923 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.237 -23.810 0.439 27.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.097 4.097 3 C -0.254 4.254 4 C -0.139 4.139 5 C 0.005 3.995 6 N -0.299 5.299 7 C -0.034 4.034 8 H 0.117 0.883 9 C -0.152 4.152 10 C 0.031 3.969 11 H 0.093 0.907 12 C -0.222 4.222 13 N -0.357 5.357 14 C 0.337 3.663 15 O -0.385 6.385 16 C -0.298 4.298 17 S 0.168 5.832 18 C -0.684 4.684 19 H 0.089 0.911 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.053 4.053 27 N -0.050 5.050 28 O 0.032 5.968 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.189 0.811 33 H 0.111 0.889 34 H 0.079 0.921 35 H 0.166 0.834 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.423 -24.679 1.313 27.226 hybrid contribution -2.656 1.984 -1.632 3.696 sum -14.079 -22.695 -0.319 26.709 Atomic orbital electron populations 1.20351 0.83996 1.04737 1.04167 1.24518 0.96441 0.86184 1.02542 1.22479 0.91427 1.01127 1.10329 1.23368 0.96759 0.90123 1.03603 1.20233 0.90599 0.97582 0.91083 1.60513 1.05695 1.54532 1.09182 1.22807 0.91266 0.89720 0.99560 0.88328 1.22694 0.98639 0.96957 0.96922 1.21532 0.93253 0.86589 0.95500 0.90700 1.22160 0.96076 1.02901 1.01049 1.48480 1.27116 1.10519 1.49602 1.20008 0.84689 0.80185 0.81370 1.90698 1.24763 1.76191 1.46841 1.23515 1.03493 1.01863 1.00889 1.85407 1.35868 0.98414 1.63513 1.22804 1.13518 0.98824 1.33292 0.91070 1.24993 0.95706 0.96642 0.96221 1.70010 1.25281 1.13008 1.41916 0.86225 0.80207 0.78647 0.80424 1.19946 1.20766 1.19938 1.23036 0.88955 0.94687 0.98629 1.73877 0.96589 1.16396 1.18122 1.84850 1.11406 1.33282 1.67297 0.89370 0.89788 0.88963 0.81143 0.88918 0.92135 0.83394 0.90230 0.89490 0.90665 0.91952 0.92677 0.89508 0.89511 0.92094 0.90495 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.22 10.45 36.01 0.38 0.15 16 2 C -0.03 -0.23 7.49 -35.30 -0.26 -0.49 16 3 C -0.23 -1.69 11.06 -39.38 -0.44 -2.13 16 4 C 0.02 0.19 6.84 -82.10 -0.56 -0.37 16 5 C 0.13 1.07 6.14 -4.98 -0.03 1.04 16 6 N -0.67 -5.38 6.37 -105.73 -0.67 -6.05 16 7 C 0.08 0.67 3.32 -65.56 -0.22 0.45 16 8 H 0.10 0.87 7.92 -51.93 -0.41 0.46 16 9 C -0.11 -1.00 6.19 -24.89 -0.15 -1.16 16 10 C 0.14 1.62 3.50 -66.95 -0.23 1.39 16 11 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 12 C -0.16 -2.01 9.06 37.16 0.34 -1.67 16 13 N -0.62 -8.80 3.08 -163.02 -0.50 -9.30 16 14 C 0.55 10.52 7.65 -10.99 -0.08 10.43 16 15 O -0.51 -11.70 14.76 5.55 0.08 -11.61 16 16 C -0.15 -3.00 5.16 36.00 0.19 -2.82 16 17 S -0.06 -1.59 20.57 -107.50 -2.21 -3.81 16 18 C -0.54 -15.19 9.50 30.94 0.29 -14.90 16 19 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.06 13.22 55.49 0.73 -25.33 16 22 Si 0.92 21.22 29.55 -169.99 -5.02 16.20 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 C 0.07 0.76 6.27 -2.53 -0.02 0.74 16 27 N -0.35 -3.84 12.07 33.42 0.40 -3.44 16 28 O 0.10 0.95 11.20 17.19 0.19 1.15 16 29 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.35 2.56 8.29 -39.29 -0.33 2.23 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.70 7.83 -51.93 -0.41 0.30 16 38 H 0.07 1.17 6.74 -51.93 -0.35 0.82 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 1.65 7.85 -51.91 -0.41 1.24 16 42 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 43 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.08 0.79 7.48 -51.93 -0.39 0.41 16 45 H 0.07 0.64 7.80 -51.93 -0.40 0.23 16 LS Contribution 389.70 15.07 5.87 5.87 Total: -1.00 -35.43 389.70 -8.91 -44.34 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -6.89 Total: -0.70 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -0.90 Total: -7.33 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: -0.04 Total: -44.11 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.27 Total: -10.47 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.43 -8.91 -44.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676709005.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.490 kcal (2) G-P(sol) polarization free energy of solvation -35.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds