Wall clock time and date at job start Sat Apr 11 2020 05:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35447 * 126.77882 * 2 1 4 4 C 1.41381 * 103.98693 * 180.09739 * 3 2 1 5 5 C 1.50701 * 126.80040 * 179.88993 * 4 3 2 6 6 N 1.46895 * 109.47160 * 94.71192 * 5 4 3 7 7 C 1.46900 * 111.00037 * 179.97438 * 6 5 4 8 8 C 1.53787 * 113.61713 * 154.99779 * 7 6 5 9 9 C 1.53781 * 87.07987 * 140.06528 * 8 7 6 10 10 N 1.46500 * 113.61339 * 219.93875 * 9 8 7 11 11 C 1.46493 * 120.00241 * 58.46924 * 10 9 8 12 12 C 1.34780 * 119.99619 * 238.47322 * 10 9 8 13 13 O 1.21282 * 120.00545 * 359.97438 * 12 10 9 14 14 C 1.50701 * 119.99697 * 179.97438 * 12 10 9 15 15 S 1.81002 * 109.47149 * 180.02562 * 14 12 10 16 16 C 1.76198 * 100.00329 * 180.02562 * 15 14 12 17 17 H 1.08009 * 119.99716 * 0.02562 * 16 15 14 18 18 C 1.38790 * 120.00292 * 179.97438 * 16 15 14 19 19 N 1.31633 * 120.00077 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00113 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47259 * 90.00237 * 20 18 16 22 22 H 1.48501 * 109.47319 * 209.99884 * 20 18 16 23 23 H 1.48496 * 109.47127 * 329.99835 * 20 18 16 24 24 C 1.53779 * 113.69049 * 252.53571 * 7 6 5 25 25 N 1.30176 * 106.39373 * 359.62799 * 4 3 2 26 26 O 1.20916 * 111.60356 * 0.23984 * 25 4 3 27 27 H 1.09003 * 109.47076 * 180.29875 * 1 2 3 28 28 H 1.09002 * 109.46963 * 300.29984 * 1 2 3 29 29 H 1.09001 * 109.47014 * 60.29790 * 1 2 3 30 30 H 1.08002 * 128.00870 * 359.96463 * 3 2 1 31 31 H 1.08999 * 109.47544 * 334.70673 * 5 4 3 32 32 H 1.09002 * 109.46889 * 214.71252 * 5 4 3 33 33 H 1.00905 * 111.00279 * 56.04539 * 6 5 4 34 34 H 1.09003 * 112.85290 * 23.80327 * 7 6 5 35 35 H 1.09005 * 113.61051 * 25.51932 * 8 7 6 36 36 H 1.08993 * 113.61359 * 254.61969 * 8 7 6 37 37 H 1.09002 * 113.61228 * 89.11929 * 9 8 7 38 38 H 1.09006 * 109.46781 * 90.00210 * 11 10 9 39 39 H 1.09007 * 109.47581 * 210.00131 * 11 10 9 40 40 H 1.09004 * 109.47550 * 330.00297 * 11 10 9 41 41 H 1.08998 * 109.47439 * 300.00253 * 14 12 10 42 42 H 1.08997 * 109.47476 * 60.00058 * 14 12 10 43 43 H 0.96993 * 120.00324 * 179.97438 * 19 18 16 44 44 H 1.09003 * 113.61775 * 105.46444 * 24 7 6 45 45 H 1.08996 * 113.61960 * 334.55171 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5372 -0.0023 5 6 4.9211 1.3000 -0.0056 6 7 5.4039 1.4507 1.3735 7 6 6.6724 2.1907 1.4093 8 6 6.9306 2.9066 2.7456 9 6 8.3996 2.4749 2.6029 10 7 9.0102 2.0454 3.8635 11 6 8.4274 0.9332 4.6181 12 6 10.1080 2.6737 4.3289 13 8 10.5907 3.5942 3.7041 14 6 10.7357 2.2322 5.6259 15 16 12.1812 3.2631 5.9782 16 6 12.7028 2.5484 7.5019 17 1 12.1531 1.7212 7.9265 18 6 13.8204 3.0476 8.1561 19 7 14.4912 4.0547 7.6378 20 14 14.3737 2.2895 9.7711 21 1 15.3324 1.1887 9.4985 22 1 15.0345 3.3262 10.6040 23 1 13.1942 1.7508 10.4948 24 6 7.8915 1.3117 1.7347 25 7 3.4763 -0.7565 0.0047 26 8 2.3095 -1.0736 0.0061 27 1 -0.3633 -1.0277 0.0054 28 1 -0.3633 0.5185 0.8873 29 1 -0.3633 0.5092 -0.8927 30 1 2.0346 2.1270 -0.0005 31 1 4.7633 2.2849 -0.4451 32 1 5.6608 0.7548 -0.5920 33 1 5.4966 0.5528 1.8244 34 1 6.8147 2.8292 0.5374 35 1 6.4208 2.4472 3.5926 36 1 6.7859 3.9858 2.6979 37 1 9.0141 3.1910 2.0573 38 1 8.8790 -0.0036 4.2914 39 1 8.6176 1.0766 5.6818 40 1 7.3522 0.8988 4.4426 41 1 10.0112 2.3349 6.4337 42 1 11.0436 1.1898 5.5444 43 1 15.2720 4.4039 8.0951 44 1 8.5229 1.1036 0.8708 45 1 7.6446 0.4165 2.3052 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677379415.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:47 Heat of formation + Delta-G solvation = 52.489464 kcal Electronic energy + Delta-G solvation = -25663.312270 eV Core-core repulsion = 21811.431469 eV Total energy + Delta-G solvation = -3851.880801 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.31213 -40.34866 -38.42879 -36.09955 -34.52550 -33.90634 -32.59029 -32.42155 -29.21083 -28.27177 -27.22263 -26.46014 -25.87637 -25.48523 -23.47061 -23.13700 -20.64909 -19.93659 -19.01036 -18.03505 -17.69586 -17.60929 -16.95079 -16.20373 -15.93171 -15.47713 -15.14489 -15.00012 -14.79647 -14.40520 -14.23235 -13.89578 -13.77614 -13.66396 -13.29788 -13.06738 -12.86931 -12.83443 -12.62439 -12.57008 -12.37301 -12.20988 -11.91889 -11.53234 -11.31851 -11.21685 -11.05517 -11.01634 -10.84678 -10.74313 -10.50655 -9.79518 -9.73383 -9.33403 -9.05880 -8.83687 -8.45018 -8.21698 -6.49236 -6.20848 -3.91421 1.05660 1.78086 2.69684 2.93950 3.04065 3.22812 3.26400 3.30776 3.57105 3.67387 3.91635 4.01622 4.21084 4.34206 4.42359 4.57132 4.63896 4.71723 4.75839 4.80364 4.85906 4.96209 5.03162 5.11301 5.13962 5.14350 5.24311 5.32424 5.42229 5.43942 5.48540 5.52585 5.59654 5.63866 5.68096 5.78804 5.86815 5.92771 6.04067 6.14576 6.58918 6.69462 6.86631 7.56297 7.60440 7.86989 8.35908 8.56890 9.24410 10.86607 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032098 B = 0.001607 C = 0.001563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.110227 B =17424.790839 C =17910.320195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.036 4.036 3 C -0.219 4.219 4 C 0.023 3.977 5 C 0.137 3.863 6 N -0.670 5.670 7 C 0.069 3.931 8 C -0.137 4.137 9 C 0.127 3.873 10 N -0.612 5.612 11 C 0.079 3.921 12 C 0.534 3.466 13 O -0.517 6.517 14 C -0.150 4.150 15 S -0.062 6.062 16 C -0.535 4.535 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C -0.178 4.178 25 N -0.363 5.363 26 O 0.099 5.901 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.171 0.829 31 H 0.096 0.904 32 H 0.051 0.949 33 H 0.346 0.654 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.121 0.879 38 H 0.053 0.947 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.073 0.927 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.709 -8.331 -16.380 34.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.099 4.099 3 C -0.241 4.241 4 C -0.136 4.136 5 C 0.007 3.993 6 N -0.301 5.301 7 C -0.041 4.041 8 C -0.177 4.177 9 C 0.022 3.978 10 N -0.347 5.347 11 C -0.065 4.065 12 C 0.322 3.678 13 O -0.391 6.391 14 C -0.301 4.301 15 S 0.165 5.835 16 C -0.683 4.683 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.197 1.197 24 C -0.218 4.218 25 N -0.068 5.068 26 O 0.032 5.968 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.189 0.811 31 H 0.115 0.885 32 H 0.069 0.931 33 H 0.166 0.834 34 H 0.121 0.879 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.139 0.861 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -27.364 -7.319 -17.155 33.116 hybrid contribution 0.037 -1.559 1.492 2.158 sum -27.328 -8.878 -15.664 32.726 Atomic orbital electron populations 1.20349 0.83980 1.04714 1.04177 1.24532 0.96437 0.86154 1.02809 1.22390 0.91182 1.01058 1.09439 1.23457 0.97427 0.89806 1.02892 1.20245 0.89288 0.98710 0.91039 1.60472 1.29587 1.24671 1.15371 1.22868 0.86058 0.96188 0.99001 1.23546 0.95538 1.01225 0.97382 1.22312 0.93321 0.96868 0.85308 1.47766 1.29003 1.34979 1.22939 1.21731 0.98636 0.89071 0.97018 1.20372 0.79038 0.81753 0.86628 1.90682 1.61355 1.28319 1.58772 1.23564 1.04497 1.05545 0.96465 1.85387 1.25949 1.43303 1.28907 1.22862 1.16125 1.21284 1.08063 0.90958 1.24985 0.95397 0.94881 0.98281 1.70018 1.17975 1.23535 1.38755 0.86171 0.78793 0.78784 0.81771 1.20281 1.20740 1.19703 1.24162 0.98520 0.98587 1.00551 1.73851 0.97113 1.16438 1.19356 1.84824 1.11267 1.33272 1.67439 0.89889 0.89060 0.89157 0.81109 0.88537 0.93112 0.83445 0.87913 0.89243 0.90615 0.86146 0.92824 0.90526 0.91293 0.89235 0.89303 0.92194 0.90859 0.89321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.17 10.45 36.01 0.38 0.20 16 2 C -0.04 -0.23 7.49 -35.30 -0.26 -0.49 16 3 C -0.22 -1.51 11.06 -39.38 -0.44 -1.94 16 4 C 0.02 0.20 6.84 -82.10 -0.56 -0.36 16 5 C 0.14 1.01 6.12 -4.98 -0.03 0.98 16 6 N -0.67 -5.36 6.61 -107.13 -0.71 -6.07 16 7 C 0.07 0.56 4.18 -66.90 -0.28 0.28 16 8 C -0.14 -1.36 7.41 -25.92 -0.19 -1.55 16 9 C 0.13 1.53 4.21 -67.12 -0.28 1.25 16 10 N -0.61 -8.75 3.09 -173.00 -0.53 -9.28 16 11 C 0.08 0.85 8.85 59.84 0.53 1.38 16 12 C 0.53 10.32 7.69 -10.98 -0.08 10.24 16 13 O -0.52 -11.93 15.34 5.56 0.09 -11.84 16 14 C -0.15 -3.10 4.71 36.01 0.17 -2.93 16 15 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 16 C -0.54 -15.36 9.50 30.94 0.29 -15.07 16 17 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 18 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 19 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 20 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 C -0.18 -1.63 7.15 -25.92 -0.19 -1.81 16 25 N -0.36 -3.74 12.07 33.42 0.40 -3.34 16 26 O 0.10 0.89 11.20 17.18 0.19 1.09 16 27 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 28 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.09 0.09 8.14 -51.93 -0.42 -0.34 16 30 H 0.17 0.81 8.06 -52.49 -0.42 0.38 16 31 H 0.10 0.58 8.13 -51.93 -0.42 0.16 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.35 2.90 8.19 -39.29 -0.32 2.58 16 34 H 0.10 0.75 7.87 -51.93 -0.41 0.34 16 35 H 0.09 0.90 6.81 -51.93 -0.35 0.54 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.12 1.67 7.21 -51.93 -0.37 1.30 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.85 6.44 -51.92 -0.33 0.51 16 40 H 0.07 0.60 6.33 -51.93 -0.33 0.27 16 41 H 0.09 1.71 7.40 -51.92 -0.38 1.33 16 42 H 0.09 1.71 8.11 -51.92 -0.42 1.29 16 43 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.09 0.77 6.51 -51.93 -0.34 0.44 16 LS Contribution 388.27 15.07 5.85 5.85 Total: -1.00 -35.72 388.27 -8.87 -44.59 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -6.61 Total: -0.19 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -1.04 Total: -7.80 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: -0.10 Total: -44.25 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.28 Total: -10.76 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.72 -8.87 -44.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677379415.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.075 kcal (2) G-P(sol) polarization free energy of solvation -35.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds