Wall clock time and date at job start Sat Apr 11 2020 05:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34330 * 126.44521 * 2 1 4 4 N 1.34480 * 107.66802 * 179.76793 * 3 2 1 5 5 C 1.30253 * 108.70058 * 0.42577 * 4 3 2 6 6 C 1.50697 * 125.61888 * 179.84284 * 5 4 3 7 7 N 1.46891 * 109.47596 * 89.68998 * 6 5 4 8 8 C 1.46904 * 111.00231 * 184.31934 * 7 6 5 9 9 H 1.09005 * 109.47296 * 184.18906 * 8 7 6 10 10 C 1.52996 * 109.47158 * 64.19372 * 8 7 6 11 11 N 1.46496 * 109.47520 * 54.99993 * 10 8 7 12 12 C 1.34776 * 120.00281 * 180.02562 * 11 10 8 13 13 O 1.21284 * 119.99975 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00068 * 180.02562 * 12 11 10 15 15 S 1.81008 * 109.47117 * 180.02562 * 14 12 11 16 16 C 1.76198 * 99.99761 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00381 * 359.97438 * 16 15 14 18 18 C 1.38803 * 119.99792 * 180.02562 * 16 15 14 19 19 N 1.31627 * 120.00035 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99954 * 179.97438 * 18 16 15 21 21 H 1.48510 * 109.47107 * 89.99926 * 20 18 16 22 22 H 1.48495 * 109.47296 * 209.99842 * 20 18 16 23 23 H 1.48497 * 109.47390 * 330.00388 * 20 18 16 24 24 C 1.52995 * 109.46871 * 304.19327 * 8 7 6 25 25 C 1.53002 * 117.49718 * 225.81398 * 24 8 7 26 26 C 1.53003 * 117.49689 * 294.47148 * 24 8 7 27 27 O 1.33973 * 108.76158 * 359.57083 * 5 4 3 28 28 H 1.09002 * 109.47408 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46948 * 299.99570 * 1 2 3 30 30 H 1.08997 * 109.47546 * 59.99803 * 1 2 3 31 31 H 1.07994 * 126.16444 * 0.02562 * 3 2 1 32 32 H 1.09001 * 109.46752 * 329.68588 * 6 5 4 33 33 H 1.09003 * 109.47072 * 209.68797 * 6 5 4 34 34 H 1.00907 * 111.00120 * 308.26840 * 7 6 5 35 35 H 1.08999 * 109.47521 * 175.00028 * 10 8 7 36 36 H 1.09001 * 109.47233 * 294.99922 * 10 8 7 37 37 H 0.96999 * 119.99913 * 359.97438 * 11 10 8 38 38 H 1.09003 * 109.46888 * 299.99324 * 14 12 11 39 39 H 1.08991 * 109.47720 * 59.99664 * 14 12 11 40 40 H 0.96996 * 120.00120 * 180.02562 * 19 18 16 41 41 H 1.08998 * 115.55397 * 80.14591 * 24 8 7 42 42 H 1.08994 * 117.50179 * 215.00186 * 25 24 8 43 43 H 1.09006 * 117.50210 * 0.02821 * 25 24 8 44 44 H 1.08997 * 117.50360 * 359.97438 * 26 24 8 45 45 H 1.09004 * 117.49307 * 144.99792 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 0.0052 5 6 3.5765 -0.6548 -0.0008 6 6 4.8004 -1.5341 -0.0014 7 7 5.1985 -1.8201 1.3833 8 6 6.4484 -2.5909 1.4233 9 1 6.6810 -2.8529 2.4555 10 6 7.5858 -1.7486 0.8423 11 7 7.6633 -0.4726 1.5579 12 6 8.5972 0.4367 1.2151 13 8 9.3737 0.1984 0.3144 14 6 8.6772 1.7490 1.9516 15 16 10.0218 2.7462 1.2632 16 6 9.8906 4.1798 2.2792 17 1 9.1324 4.2303 3.0466 18 6 10.7611 5.2447 2.0925 19 7 11.6849 5.1834 1.1569 20 14 10.6216 6.7648 3.1692 21 1 11.4765 6.5995 4.3723 22 1 11.0691 7.9562 2.4040 23 1 9.2085 6.9472 3.5874 24 6 6.2864 -3.8683 0.5970 25 6 6.7847 -5.1767 1.2140 26 6 5.2821 -4.9095 1.0955 27 8 2.3074 -1.0840 -0.0005 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.9822 2.1112 0.0004 32 1 5.6145 -1.0231 -0.5154 33 1 4.5760 -2.4687 -0.5153 34 1 5.2813 -0.9690 1.9190 35 1 8.5283 -2.2849 0.9528 36 1 7.3961 -1.5614 -0.2146 37 1 7.0421 -0.2819 2.2780 38 1 7.7347 2.2854 1.8417 39 1 8.8676 1.5616 3.0083 40 1 12.2935 5.9274 1.0267 41 1 6.3929 -3.7477 -0.4810 42 1 7.2190 -5.9168 0.5420 43 1 7.2276 -5.1276 2.2088 44 1 4.7372 -4.6846 2.0123 45 1 4.7280 -5.4737 0.3453 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690143536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:04 Heat of formation + Delta-G solvation = 14.077022 kcal Electronic energy + Delta-G solvation = -26415.857464 eV Core-core repulsion = 22562.310975 eV Total energy + Delta-G solvation = -3853.546489 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.52273 -39.80951 -38.45625 -35.91744 -34.89795 -34.01593 -32.62296 -32.40478 -30.38179 -28.87910 -27.19510 -25.48074 -25.23503 -23.39042 -22.58576 -22.48332 -21.40262 -20.39262 -19.93573 -17.91532 -17.63431 -17.02638 -16.52233 -16.22913 -16.07925 -15.53815 -15.42570 -14.78393 -14.77969 -14.59391 -14.23159 -14.08008 -13.77168 -13.74062 -13.42533 -13.21856 -13.04844 -12.72956 -12.59796 -12.39008 -12.34626 -11.78825 -11.69792 -11.53138 -11.32608 -11.04368 -11.00199 -10.75581 -10.68618 -10.61653 -10.56249 -9.79881 -9.42007 -9.06273 -9.05309 -8.95769 -8.79393 -8.21458 -6.47331 -6.19424 -3.89590 1.16833 2.35458 2.47221 2.98360 3.09572 3.24077 3.27650 3.31940 3.41557 3.69136 3.73282 4.06362 4.22582 4.27332 4.47726 4.50042 4.67638 4.73819 4.77215 4.83169 4.91563 5.01173 5.03909 5.08675 5.15203 5.15793 5.20887 5.27703 5.39930 5.51952 5.59810 5.63245 5.65965 5.79147 5.81046 5.84742 5.91206 5.93435 6.08331 6.17123 6.37099 6.55380 6.81841 7.54413 7.61288 7.63152 8.37724 8.59080 9.25963 10.88090 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009707 B = 0.002723 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.729943 B =10280.925184 C =12689.042802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.050 4.050 3 C -0.042 4.042 4 N -0.469 5.469 5 C 0.190 3.810 6 C 0.151 3.849 7 N -0.671 5.671 8 C 0.111 3.889 9 H 0.098 0.902 10 C 0.087 3.913 11 N -0.741 5.741 12 C 0.535 3.465 13 O -0.515 6.515 14 C -0.153 4.153 15 S -0.060 6.060 16 C -0.534 4.534 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C -0.154 4.154 25 C -0.174 4.174 26 C -0.159 4.159 27 O -0.194 6.194 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.183 0.817 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.348 0.652 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.394 0.606 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.107 0.893 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.977 -19.052 0.044 29.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.104 4.104 3 C -0.181 4.181 4 N -0.199 5.199 5 C -0.017 4.017 6 C 0.022 3.978 7 N -0.304 5.304 8 C 0.001 3.999 9 H 0.116 0.884 10 C -0.039 4.039 11 N -0.397 5.397 12 C 0.322 3.678 13 O -0.389 6.389 14 C -0.304 4.304 15 S 0.167 5.833 16 C -0.682 4.682 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.504 5.504 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.197 1.197 24 C -0.173 4.173 25 C -0.212 4.212 26 C -0.196 4.196 27 O -0.081 6.081 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.200 0.800 32 H 0.101 0.899 33 H 0.122 0.878 34 H 0.168 0.832 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.228 0.772 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.125 0.875 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.118 0.882 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -20.390 -19.594 -1.509 28.319 hybrid contribution -1.267 1.819 1.793 2.851 sum -21.658 -17.775 0.284 28.019 Atomic orbital electron populations 1.20267 0.84022 1.04248 1.03893 1.23500 0.95082 0.84683 1.07131 1.23110 0.87720 1.00507 1.06731 1.70521 1.23224 1.09104 1.17036 1.26034 0.84239 0.90016 1.01378 1.20302 0.88240 0.97006 0.92273 1.60774 1.32602 1.26061 1.10974 1.21446 0.86434 0.91797 1.00234 0.88377 1.21953 0.99968 0.84947 0.97046 1.45983 1.36924 1.17523 1.39222 1.20290 0.79433 0.84765 0.83356 1.90705 1.40219 1.78172 1.29811 1.23528 1.07148 0.96511 1.03208 1.85377 1.36581 1.13783 1.47570 1.22866 1.21160 1.02646 1.21571 0.90937 1.24992 0.94533 0.98408 0.95676 1.70016 1.17577 1.32025 1.30734 0.86168 0.78539 0.80992 0.79806 1.20285 1.20760 1.19679 1.22129 1.06514 0.89398 0.99248 1.23019 0.97442 0.98250 1.02448 1.22847 0.91995 1.01315 1.03482 1.84399 1.17790 1.36406 1.69494 0.90439 0.89302 0.89360 0.79960 0.89945 0.87793 0.83157 0.90571 0.91310 0.77158 0.89104 0.89266 0.92206 0.87521 0.88614 0.88576 0.88193 0.88989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.43 36.00 0.38 0.03 16 2 C -0.05 -0.49 7.39 -35.69 -0.26 -0.75 16 3 C -0.04 -0.46 11.80 -17.77 -0.21 -0.67 16 4 N -0.47 -6.37 11.29 -11.10 -0.13 -6.49 16 5 C 0.19 2.24 7.81 -12.95 -0.10 2.14 16 6 C 0.15 1.44 5.65 -4.98 -0.03 1.41 16 7 N -0.67 -5.77 6.42 -108.00 -0.69 -6.46 16 8 C 0.11 0.88 2.90 -67.72 -0.20 0.68 16 9 H 0.10 0.73 7.95 -51.93 -0.41 0.32 16 10 C 0.09 0.96 4.79 -4.05 -0.02 0.94 16 11 N -0.74 -9.71 5.31 -60.30 -0.32 -10.03 16 12 C 0.54 10.08 7.85 -10.99 -0.09 9.99 16 13 O -0.52 -11.80 15.86 5.55 0.09 -11.71 16 14 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16 15 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 16 C -0.53 -15.45 9.50 30.94 0.29 -15.16 16 17 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 19 N -0.87 -26.50 13.22 55.49 0.73 -25.77 16 20 Si 0.92 21.70 29.55 -169.99 -5.02 16.68 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 C -0.15 -1.08 3.78 -90.62 -0.34 -1.42 16 25 C -0.17 -1.11 10.18 -26.69 -0.27 -1.38 16 26 C -0.16 -1.03 10.22 -26.69 -0.27 -1.30 16 27 O -0.19 -2.21 10.78 5.35 0.06 -2.15 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.18 1.57 8.06 -52.49 -0.42 1.14 16 32 H 0.08 0.88 6.32 -51.93 -0.33 0.56 16 33 H 0.10 0.83 7.00 -51.93 -0.36 0.47 16 34 H 0.35 3.21 7.08 -39.29 -0.28 2.93 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.83 6.66 -51.93 -0.35 0.48 16 37 H 0.39 4.18 7.12 -40.82 -0.29 3.89 16 38 H 0.09 1.78 8.14 -51.91 -0.42 1.35 16 39 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 40 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.11 0.74 7.88 -51.93 -0.41 0.33 16 42 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.10 0.60 8.08 -51.93 -0.42 0.18 16 44 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 393.82 15.07 5.93 5.93 Total: -1.00 -36.57 393.82 -9.18 -45.74 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -6.62 Total: 4.53 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -1.00 Total: -6.42 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: -0.41 Total: -48.75 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.15 Total: -13.86 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.57 -9.18 -45.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690143536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.822 kcal (2) G-P(sol) polarization free energy of solvation -36.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds