Wall clock time and date at job start Sat Apr 11 2020 05:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34330 * 126.44521 * 2 1 4 4 N 1.34480 * 107.66802 * 179.76793 * 3 2 1 5 5 C 1.30253 * 108.70058 * 0.42577 * 4 3 2 6 6 C 1.50697 * 125.61888 * 179.84284 * 5 4 3 7 7 N 1.46891 * 109.47596 * 89.68998 * 6 5 4 8 8 C 1.46904 * 111.00231 * 184.31934 * 7 6 5 9 9 H 1.09005 * 109.47296 * 184.18906 * 8 7 6 10 10 C 1.52996 * 109.47158 * 64.19372 * 8 7 6 11 11 N 1.46496 * 109.47520 * 54.99993 * 10 8 7 12 12 C 1.34776 * 120.00281 * 180.02562 * 11 10 8 13 13 O 1.21284 * 119.99975 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00068 * 180.02562 * 12 11 10 15 15 S 1.81008 * 109.47117 * 180.02562 * 14 12 11 16 16 C 1.76198 * 99.99761 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00381 * 359.97438 * 16 15 14 18 18 C 1.38803 * 119.99792 * 180.02562 * 16 15 14 19 19 N 1.31627 * 120.00035 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99954 * 179.97438 * 18 16 15 21 21 H 1.48510 * 109.47107 * 89.99926 * 20 18 16 22 22 H 1.48495 * 109.47296 * 209.99842 * 20 18 16 23 23 H 1.48497 * 109.47390 * 330.00388 * 20 18 16 24 24 C 1.52995 * 109.46871 * 304.19327 * 8 7 6 25 25 C 1.53002 * 117.49718 * 225.81398 * 24 8 7 26 26 C 1.53003 * 117.49689 * 294.47148 * 24 8 7 27 27 O 1.33973 * 108.76158 * 359.57083 * 5 4 3 28 28 H 1.09002 * 109.47408 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46948 * 299.99570 * 1 2 3 30 30 H 1.08997 * 109.47546 * 59.99803 * 1 2 3 31 31 H 1.07994 * 126.16444 * 0.02562 * 3 2 1 32 32 H 1.09001 * 109.46752 * 329.68588 * 6 5 4 33 33 H 1.09003 * 109.47072 * 209.68797 * 6 5 4 34 34 H 1.00907 * 111.00120 * 308.26840 * 7 6 5 35 35 H 1.08999 * 109.47521 * 175.00028 * 10 8 7 36 36 H 1.09001 * 109.47233 * 294.99922 * 10 8 7 37 37 H 0.96999 * 119.99913 * 359.97438 * 11 10 8 38 38 H 1.09003 * 109.46888 * 299.99324 * 14 12 11 39 39 H 1.08991 * 109.47720 * 59.99664 * 14 12 11 40 40 H 0.96996 * 120.00120 * 180.02562 * 19 18 16 41 41 H 1.08998 * 115.55397 * 80.14591 * 24 8 7 42 42 H 1.08994 * 117.50179 * 215.00186 * 25 24 8 43 43 H 1.09006 * 117.50210 * 0.02821 * 25 24 8 44 44 H 1.08997 * 117.50360 * 359.97438 * 26 24 8 45 45 H 1.09004 * 117.49307 * 144.99792 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 0.0052 5 6 3.5765 -0.6548 -0.0008 6 6 4.8004 -1.5341 -0.0014 7 7 5.1985 -1.8201 1.3833 8 6 6.4484 -2.5909 1.4233 9 1 6.6810 -2.8529 2.4555 10 6 7.5858 -1.7486 0.8423 11 7 7.6633 -0.4726 1.5579 12 6 8.5972 0.4367 1.2151 13 8 9.3737 0.1984 0.3144 14 6 8.6772 1.7490 1.9516 15 16 10.0218 2.7462 1.2632 16 6 9.8906 4.1798 2.2792 17 1 9.1324 4.2303 3.0466 18 6 10.7611 5.2447 2.0925 19 7 11.6849 5.1834 1.1569 20 14 10.6216 6.7648 3.1692 21 1 11.4765 6.5995 4.3723 22 1 11.0691 7.9562 2.4040 23 1 9.2085 6.9472 3.5874 24 6 6.2864 -3.8683 0.5970 25 6 6.7847 -5.1767 1.2140 26 6 5.2821 -4.9095 1.0955 27 8 2.3074 -1.0840 -0.0005 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.9822 2.1112 0.0004 32 1 5.6145 -1.0231 -0.5154 33 1 4.5760 -2.4687 -0.5153 34 1 5.2813 -0.9690 1.9190 35 1 8.5283 -2.2849 0.9528 36 1 7.3961 -1.5614 -0.2146 37 1 7.0421 -0.2819 2.2780 38 1 7.7347 2.2854 1.8417 39 1 8.8676 1.5616 3.0083 40 1 12.2935 5.9274 1.0267 41 1 6.3929 -3.7477 -0.4810 42 1 7.2190 -5.9168 0.5420 43 1 7.2276 -5.1276 2.2088 44 1 4.7372 -4.6846 2.0123 45 1 4.7280 -5.4737 0.3453 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690143536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:03 Heat of formation + Delta-G solvation = -14.724736 kcal Electronic energy + Delta-G solvation = -26417.106402 eV Core-core repulsion = 22562.310975 eV Total energy + Delta-G solvation = -3854.795427 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.34166 -40.95974 -39.50381 -36.65299 -35.78866 -35.11801 -34.59648 -33.34587 -31.60347 -29.97950 -28.10559 -27.62359 -26.00156 -24.24169 -23.31099 -23.07313 -22.21989 -21.71760 -20.68161 -19.85882 -18.44414 -17.95907 -17.82645 -17.39567 -17.06177 -16.89199 -16.50414 -16.30291 -15.90913 -15.74147 -15.30748 -15.06847 -14.81737 -14.59824 -14.46729 -14.29417 -13.99973 -13.81297 -13.63813 -13.26660 -13.18267 -13.13202 -12.93919 -12.87142 -12.62308 -12.41516 -12.26763 -12.01606 -11.74956 -11.54850 -11.22617 -11.15383 -11.11237 -10.94060 -10.30330 -10.21494 -9.81684 -9.56474 -8.68192 -8.35899 -6.14028 0.38162 1.24677 1.41513 1.44790 1.55201 1.56767 1.58509 1.67170 2.17511 2.26422 2.79269 2.98165 3.01152 3.29357 3.38353 3.54852 3.78879 3.82072 3.95249 4.04617 4.09239 4.15767 4.20289 4.23578 4.27241 4.35898 4.47578 4.47823 4.50341 4.64921 4.68962 4.73114 4.88028 4.92913 5.03970 5.14934 5.18057 5.27305 5.30961 5.34530 5.40505 5.40604 5.67104 6.05198 6.18632 6.37394 6.71627 7.05280 7.16707 8.73481 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009707 B = 0.002723 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.729943 B =10280.925184 C =12689.042802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.041 4.041 3 C -0.071 4.071 4 N -0.508 5.508 5 C 0.180 3.820 6 C 0.157 3.843 7 N -0.664 5.664 8 C 0.126 3.874 9 H 0.112 0.888 10 C 0.087 3.913 11 N -0.714 5.714 12 C 0.537 3.463 13 O -0.562 6.562 14 C -0.130 4.130 15 S -0.148 6.148 16 C -0.546 4.546 17 H 0.081 0.919 18 C 0.013 3.987 19 N -0.911 5.911 20 Si 0.999 3.001 21 H -0.266 1.266 22 H -0.277 1.277 23 H -0.259 1.259 24 C -0.163 4.163 25 C -0.171 4.171 26 C -0.152 4.152 27 O -0.203 6.203 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.199 0.801 32 H 0.067 0.933 33 H 0.120 0.880 34 H 0.345 0.655 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.410 0.590 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.271 0.729 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.447 -19.762 1.706 31.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.094 4.094 3 C -0.209 4.209 4 N -0.238 5.238 5 C -0.027 4.027 6 C 0.028 3.972 7 N -0.296 5.296 8 C 0.016 3.984 9 H 0.130 0.870 10 C -0.038 4.038 11 N -0.369 5.369 12 C 0.323 3.677 13 O -0.440 6.440 14 C -0.281 4.281 15 S 0.079 5.921 16 C -0.694 4.694 17 H 0.100 0.900 18 C -0.192 4.192 19 N -0.548 5.548 20 Si 0.821 3.179 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.183 1.183 24 C -0.182 4.182 25 C -0.208 4.208 26 C -0.190 4.190 27 O -0.089 6.089 28 H 0.104 0.896 29 H 0.125 0.875 30 H 0.125 0.875 31 H 0.216 0.784 32 H 0.085 0.915 33 H 0.138 0.862 34 H 0.165 0.835 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.247 0.753 38 H 0.122 0.878 39 H 0.129 0.871 40 H 0.080 0.920 41 H 0.125 0.875 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -22.918 -20.343 0.182 30.644 hybrid contribution -0.624 1.931 1.257 2.387 sum -23.542 -18.412 1.439 29.921 Atomic orbital electron populations 1.20509 0.80771 1.05378 1.05584 1.24301 0.96693 0.83759 1.04693 1.23488 0.87331 1.01873 1.08179 1.70475 1.24886 1.10225 1.18221 1.26309 0.84917 0.89878 1.01584 1.20296 0.87144 0.97152 0.92635 1.60817 1.32581 1.25837 1.10374 1.21396 0.84691 0.91445 1.00869 0.87028 1.22124 1.01191 0.83889 0.96599 1.45696 1.35126 1.17130 1.38912 1.19994 0.80035 0.84935 0.82708 1.90693 1.42462 1.78998 1.31850 1.23363 1.04398 0.96420 1.03941 1.85536 1.40948 1.15989 1.49662 1.23193 1.21586 1.02960 1.21687 0.90049 1.26140 0.93844 1.02100 0.97093 1.70179 1.18606 1.33301 1.32690 0.84946 0.79218 0.76070 0.77702 1.19144 1.20215 1.18303 1.22098 1.07770 0.89137 0.99193 1.23093 0.97461 0.97601 1.02668 1.22858 0.92059 1.00600 1.03442 1.84407 1.17839 1.37117 1.69571 0.89567 0.87522 0.87545 0.78425 0.91487 0.86225 0.83529 0.91036 0.92253 0.75296 0.87793 0.87135 0.91954 0.87484 0.88017 0.88202 0.88416 0.88248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.43 71.24 0.74 0.23 16 2 C -0.04 -0.73 7.39 24.79 0.18 -0.55 16 3 C -0.07 -1.53 11.80 83.39 0.98 -0.54 16 4 N -0.51 -13.81 11.29 -303.83 -3.43 -17.24 16 5 C 0.18 4.17 7.81 88.34 0.69 4.86 16 6 C 0.16 2.89 5.65 85.56 0.48 3.37 16 7 N -0.66 -10.47 6.42 -495.60 -3.18 -13.65 16 8 C 0.13 1.79 2.90 44.91 0.13 1.92 16 9 H 0.11 1.37 7.95 -2.38 -0.02 1.35 16 10 C 0.09 1.86 4.79 86.38 0.41 2.28 16 11 N -0.71 -18.07 5.31 -463.07 -2.46 -20.53 16 12 C 0.54 20.28 7.85 87.66 0.69 20.97 16 13 O -0.56 -26.47 15.86 -3.04 -0.05 -26.52 16 14 C -0.13 -5.34 6.16 71.24 0.44 -4.90 16 15 S -0.15 -8.44 20.57 -56.49 -1.16 -9.60 16 16 C -0.55 -31.87 9.50 67.96 0.65 -31.22 16 17 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 18 C 0.01 0.75 5.49 84.86 0.47 1.22 16 19 N -0.91 -56.81 13.22 21.65 0.29 -56.52 16 20 Si 1.00 44.33 29.55 68.60 2.03 46.35 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 22 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 24 C -0.16 -2.01 3.78 -10.79 -0.04 -2.05 16 25 C -0.17 -1.82 10.18 30.62 0.31 -1.50 16 26 C -0.15 -1.64 10.22 30.62 0.31 -1.32 16 27 O -0.20 -4.40 10.78 -3.77 -0.04 -4.44 16 28 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.20 3.29 8.06 -2.91 -0.02 3.26 16 32 H 0.07 1.45 6.32 -2.39 -0.02 1.43 16 33 H 0.12 1.78 7.00 -2.39 -0.02 1.77 16 34 H 0.35 5.86 7.08 -89.69 -0.63 5.23 16 35 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.06 1.43 6.66 -2.39 -0.02 1.42 16 37 H 0.41 7.97 7.12 -92.71 -0.66 7.31 16 38 H 0.10 3.99 8.14 -2.39 -0.02 3.98 16 39 H 0.11 4.06 8.14 -2.40 -0.02 4.04 16 40 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 41 H 0.11 1.34 7.88 -2.39 -0.02 1.32 16 42 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.10 1.00 8.08 -2.38 -0.02 0.98 16 44 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 Total: -1.00 -82.02 393.82 -1.83 -83.85 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: -0.27 Total: 25.55 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 6.45 Total: -7.25 kcal Atomic # 7 Polarization: -99.15 SS G_CDS: -8.79 Total: -107.94 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.09 Total: -30.96 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.60 kcal Total: -82.02 -1.83 -83.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690143536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.126 kcal (2) G-P(sol) polarization free energy of solvation -82.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds