Wall clock time and date at job start Sat Apr 11 2020 05:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.41379 * 126.80522 * 2 1 4 4 C 1.35449 * 103.98950 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.77908 * 180.26147 * 4 3 2 6 6 N 1.46910 * 109.47087 * 89.70930 * 5 4 3 7 7 C 1.48531 * 110.99828 * 69.87460 * 6 5 4 8 8 C 1.54935 * 103.22810 * 200.28266 * 7 6 5 9 9 C 1.54593 * 102.92320 * 37.41372 * 8 7 6 10 10 H 1.09000 * 110.30977 * 219.12813 * 9 8 7 11 11 N 1.46504 * 110.30863 * 97.05991 * 9 8 7 12 12 C 1.34768 * 119.99791 * 86.45535 * 11 9 8 13 13 O 1.21284 * 120.00431 * 0.02562 * 12 11 9 14 14 C 1.50695 * 119.99853 * 180.02562 * 12 11 9 15 15 S 1.81005 * 109.47172 * 180.02562 * 14 12 11 16 16 C 1.76198 * 99.99895 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00181 * 0.02562 * 16 15 14 18 18 C 1.38807 * 119.99926 * 179.97438 * 16 15 14 19 19 N 1.31627 * 119.99770 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99947 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47306 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46932 * 120.00495 * 20 18 16 23 23 H 1.48506 * 109.47331 * 240.00331 * 20 18 16 24 24 C 1.47905 * 110.99792 * 312.48317 * 6 5 4 25 25 H 1.08994 * 109.91965 * 26.48730 * 24 6 5 26 26 C 1.52999 * 109.91244 * 265.19226 * 24 6 5 27 27 O 1.34044 * 106.44438 * 359.97438 * 4 3 2 28 28 N 1.20917 * 111.56675 * 0.02562 * 27 4 3 29 29 H 1.08997 * 109.47336 * 269.99934 * 1 2 3 30 30 H 1.09003 * 109.47135 * 30.00078 * 1 2 3 31 31 H 1.09004 * 109.47033 * 149.99750 * 1 2 3 32 32 H 1.07997 * 128.00412 * 0.05803 * 3 2 1 33 33 H 1.08996 * 109.47062 * 209.71141 * 5 4 3 34 34 H 1.09002 * 109.46910 * 329.71700 * 5 4 3 35 35 H 1.09003 * 110.66900 * 318.71594 * 7 6 5 36 36 H 1.08994 * 110.66667 * 81.67885 * 7 6 5 37 37 H 1.08993 * 110.72461 * 155.77504 * 8 7 6 38 38 H 1.09005 * 110.71788 * 278.87693 * 8 7 6 39 39 H 0.96994 * 119.99672 * 266.45122 * 11 9 8 40 40 H 1.08998 * 109.47216 * 299.99772 * 14 12 11 41 41 H 1.09002 * 109.47434 * 60.00239 * 14 12 11 42 42 H 0.97005 * 119.99576 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.47120 * 61.46172 * 26 24 6 44 44 H 1.09004 * 109.47207 * 181.45114 * 26 24 6 45 45 H 1.08996 * 109.47438 * 301.45869 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6024 0.6068 -0.0006 5 6 4.9022 1.3695 0.0047 6 7 5.3190 1.6172 1.3914 7 6 5.7404 0.3563 2.0538 8 6 5.6260 0.6927 3.5619 9 6 4.3628 1.5818 3.6229 10 1 4.5071 2.3959 4.3333 11 7 3.1950 0.7810 3.9989 12 6 2.9097 0.5753 5.2999 13 8 3.6193 1.0533 6.1594 14 6 1.7088 -0.2489 5.6866 15 16 1.5954 -0.3403 7.4908 16 6 0.1476 -1.3307 7.6566 17 1 -0.3720 -1.6793 6.7762 18 6 -0.3247 -1.6638 8.9186 19 7 0.3088 -1.2393 9.9915 20 14 -1.8601 -2.7131 9.0943 21 1 -2.3809 -3.0579 7.7471 22 1 -1.5262 -3.9595 9.8294 23 1 -2.8934 -1.9566 9.8463 24 6 4.1945 2.1398 2.1976 25 1 3.2474 1.8027 1.7763 26 6 4.2411 3.6688 2.2275 27 8 3.4537 -0.7254 -0.0003 28 7 2.2868 -1.0423 -0.0002 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 2.0710 2.1742 0.0009 33 1 5.6680 0.7858 -0.5062 34 1 4.7671 2.3210 -0.5095 35 1 5.0683 -0.4603 1.7898 36 1 6.7681 0.1077 1.7894 37 1 5.4879 -0.2145 4.1500 38 1 6.5042 1.2414 3.9023 39 1 2.6273 0.3991 3.3115 40 1 0.8062 0.2155 5.2893 41 1 1.8107 -1.2540 5.2773 42 1 -0.0215 -1.4718 10.8735 43 1 4.1383 4.0553 1.2135 44 1 3.4249 4.0452 2.8442 45 1 5.1932 3.9951 2.6459 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691643484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:13 Heat of formation + Delta-G solvation = 7.862510 kcal Electronic energy + Delta-G solvation = -27742.566296 eV Core-core repulsion = 23888.750326 eV Total energy + Delta-G solvation = -3853.815971 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.99643 -41.36795 -39.80902 -35.94639 -35.72708 -34.61889 -33.83188 -32.39506 -31.64950 -30.25333 -29.60395 -27.72735 -26.63231 -26.06264 -24.13591 -22.83594 -22.01000 -21.37974 -20.55404 -19.80381 -18.85871 -18.14272 -17.87774 -17.78664 -16.91368 -16.80204 -16.40913 -16.16452 -15.83321 -15.51914 -15.38911 -14.75163 -14.65490 -14.41138 -14.22617 -14.08091 -13.96711 -13.86717 -13.56264 -13.44491 -13.19916 -13.06975 -12.94367 -12.78288 -12.66773 -12.50628 -12.33580 -12.30691 -11.86857 -11.82274 -11.72568 -11.18775 -11.02362 -10.91139 -10.38657 -10.32965 -10.19219 -9.73105 -8.70510 -8.38056 -6.16368 0.42624 1.21845 1.22203 1.38857 1.42956 1.52009 1.54945 2.12432 2.17090 2.23889 2.88510 2.96181 3.26830 3.27069 3.37178 3.47682 3.62365 3.87162 3.97817 4.05055 4.13822 4.18968 4.22231 4.28088 4.38842 4.40659 4.43495 4.54352 4.64906 4.69153 4.74690 4.80640 4.88295 4.89020 4.93866 4.98001 5.03716 5.07472 5.22243 5.34857 5.38552 5.40166 5.72369 5.85448 6.16564 6.32906 7.03345 7.12783 7.29490 8.71444 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012990 B = 0.003064 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.046553 B = 9136.650163 C =10548.829454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.006 3.994 3 C -0.220 4.220 4 C -0.065 4.065 5 C 0.123 3.877 6 N -0.485 5.485 7 C 0.036 3.964 8 C -0.135 4.135 9 C 0.133 3.867 10 H 0.082 0.918 11 N -0.709 5.709 12 C 0.538 3.462 13 O -0.556 6.556 14 C -0.131 4.131 15 S -0.141 6.141 16 C -0.549 4.549 17 H 0.080 0.920 18 C 0.016 3.984 19 N -0.909 5.909 20 Si 0.998 3.002 21 H -0.259 1.259 22 H -0.273 1.273 23 H -0.271 1.271 24 C 0.046 3.954 25 H 0.081 0.919 26 C -0.130 4.130 27 O 0.086 5.914 28 N -0.400 5.400 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.197 0.803 33 H 0.116 0.884 34 H 0.140 0.860 35 H 0.042 0.958 36 H 0.108 0.892 37 H 0.055 0.945 38 H 0.089 0.911 39 H 0.403 0.597 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.272 0.728 43 H 0.082 0.918 44 H 0.055 0.945 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.764 8.305 -27.781 29.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.152 4.152 3 C -0.242 4.242 4 C -0.131 4.131 5 C -0.006 4.006 6 N -0.208 5.208 7 C -0.091 4.091 8 C -0.174 4.174 9 C 0.028 3.972 10 H 0.101 0.899 11 N -0.361 5.361 12 C 0.324 3.676 13 O -0.433 6.433 14 C -0.282 4.282 15 S 0.086 5.914 16 C -0.697 4.697 17 H 0.098 0.902 18 C -0.189 4.189 19 N -0.546 5.546 20 Si 0.820 3.180 21 H -0.183 1.183 22 H -0.199 1.199 23 H -0.196 1.196 24 C -0.062 4.062 25 H 0.099 0.901 26 C -0.187 4.187 27 O 0.021 5.979 28 N -0.107 5.107 29 H 0.102 0.898 30 H 0.124 0.876 31 H 0.091 0.909 32 H 0.215 0.785 33 H 0.135 0.865 34 H 0.158 0.842 35 H 0.060 0.940 36 H 0.126 0.874 37 H 0.074 0.926 38 H 0.108 0.892 39 H 0.239 0.761 40 H 0.125 0.875 41 H 0.118 0.882 42 H 0.081 0.919 43 H 0.101 0.899 44 H 0.075 0.925 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.202 8.180 -26.216 28.661 hybrid contribution -2.632 -1.373 -0.506 3.012 sum 5.570 6.807 -26.723 28.133 Atomic orbital electron populations 1.20314 0.84632 1.04770 1.04074 1.24158 1.00215 0.88938 1.01926 1.22849 0.90640 1.01947 1.08752 1.26047 1.00969 0.83456 1.02619 1.21481 0.87925 0.99651 0.91582 1.65211 1.30439 1.23974 1.01174 1.23339 1.02447 0.90841 0.92522 1.22887 0.98110 0.99631 0.96767 1.21962 0.84789 0.93516 0.96931 0.89939 1.45931 1.29896 1.54316 1.06006 1.19987 0.85079 0.79704 0.82874 1.90692 1.51531 1.50698 1.50404 1.23365 0.99661 1.02896 1.02267 1.85512 1.37536 1.69101 0.99255 1.23224 1.12933 1.37590 0.95948 0.90223 1.26107 1.01370 0.97239 0.94213 1.70179 1.41002 1.44689 0.98704 0.84920 0.76751 0.77501 0.78868 1.18253 1.19856 1.19627 1.22944 0.94940 0.97839 0.90486 0.90123 1.21694 1.02348 0.91387 1.03320 1.84845 1.21400 1.24098 1.67517 1.73901 0.90048 1.25630 1.21156 0.89842 0.87639 0.90926 0.78545 0.86539 0.84202 0.93969 0.87422 0.92609 0.89221 0.76148 0.87497 0.88189 0.91890 0.89934 0.92548 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 10.47 71.23 0.75 -0.32 16 2 C 0.01 0.10 7.33 43.57 0.32 0.42 16 3 C -0.22 -2.83 8.89 22.40 0.20 -2.63 16 4 C -0.07 -0.89 5.11 25.04 0.13 -0.76 16 5 C 0.12 1.04 6.11 85.55 0.52 1.56 16 6 N -0.49 -6.17 5.17 -862.61 -4.46 -10.63 16 7 C 0.04 0.58 6.39 86.65 0.55 1.13 16 8 C -0.13 -2.97 6.78 31.80 0.22 -2.76 16 9 C 0.13 3.08 2.93 45.87 0.13 3.22 16 10 H 0.08 2.27 7.19 -2.39 -0.02 2.25 16 11 N -0.71 -19.24 5.08 -438.38 -2.23 -21.47 16 12 C 0.54 20.43 7.84 87.66 0.69 21.11 16 13 O -0.56 -25.85 15.56 -3.04 -0.05 -25.90 16 14 C -0.13 -5.39 6.16 71.23 0.44 -4.96 16 15 S -0.14 -7.94 20.57 -56.49 -1.16 -9.11 16 16 C -0.55 -31.84 9.50 67.96 0.65 -31.20 16 17 H 0.08 4.34 7.80 -2.91 -0.02 4.31 16 18 C 0.02 0.90 5.49 84.86 0.47 1.37 16 19 N -0.91 -56.09 13.22 21.65 0.29 -55.80 16 20 Si 1.00 44.01 29.55 68.60 2.03 46.04 16 21 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 24 C 0.05 0.71 2.62 45.06 0.12 0.83 16 25 H 0.08 1.19 3.73 -2.39 -0.01 1.18 16 26 C -0.13 -1.65 9.32 71.98 0.67 -0.98 16 27 O 0.09 1.73 10.35 71.60 0.74 2.48 16 28 N -0.40 -9.23 12.07 -49.55 -0.60 -9.82 16 29 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.20 1.40 8.05 -2.91 -0.02 1.38 16 33 H 0.12 0.71 8.08 -2.39 -0.02 0.69 16 34 H 0.14 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.04 0.78 6.52 -2.39 -0.02 0.77 16 36 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.06 1.51 8.05 -2.39 -0.02 1.49 16 38 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 39 H 0.40 9.41 8.29 -92.71 -0.77 8.65 16 40 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 41 H 0.10 3.88 8.14 -2.39 -0.02 3.86 16 42 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 43 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 45 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -78.44 383.42 0.65 -77.79 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 0.24 Total: 20.38 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: 5.85 Total: -13.96 kcal Atomic # 7 Polarization: -90.72 SS G_CDS: -7.00 Total: -97.72 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: 0.69 Total: -23.42 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: -7.94 SS G_CDS: -1.16 Total: -9.11 kcal Total: -78.44 0.65 -77.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691643484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.654 kcal (2) G-P(sol) polarization free energy of solvation -78.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds