Wall clock time and date at job start Sat Apr 11 2020 05:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29517 * 121.53648 * 2 1 4 4 S 1.69485 * 107.84639 * 180.23420 * 3 2 1 5 5 C 1.72017 * 96.02304 * 359.72433 * 4 3 2 6 6 C 1.37891 * 105.36985 * 359.97438 * 5 4 3 7 7 C 1.47342 * 123.08819 * 180.02562 * 6 5 4 8 8 O 1.21617 * 119.99874 * 214.62796 * 7 6 5 9 9 N 1.34773 * 119.99947 * 34.62236 * 7 6 5 10 10 C 1.46922 * 120.63167 * 1.95539 * 9 7 6 11 11 C 1.53192 * 108.77488 * 233.62635 * 10 9 7 12 12 C 1.53043 * 109.31169 * 305.36544 * 11 10 9 13 13 C 1.53035 * 109.54123 * 61.36472 * 12 11 10 14 14 H 1.08998 * 109.52364 * 58.60143 * 13 12 11 15 15 N 1.46500 * 109.50132 * 178.68614 * 13 12 11 16 16 C 1.36937 * 120.00202 * 59.83171 * 15 13 12 17 17 H 1.08005 * 119.99492 * 59.82351 * 16 15 13 18 18 C 1.38803 * 120.00342 * 239.82600 * 16 15 13 19 19 N 1.31618 * 120.00430 * 201.14887 * 18 16 15 20 20 Si 1.86809 * 120.00058 * 21.14977 * 18 16 15 21 21 H 1.48493 * 109.47182 * 95.50774 * 20 18 16 22 22 H 1.48499 * 109.46895 * 215.50887 * 20 18 16 23 23 H 1.48497 * 109.46902 * 335.50522 * 20 18 16 24 24 C 1.46497 * 119.99719 * 239.84048 * 15 13 12 25 25 C 1.53004 * 109.46947 * 277.67345 * 24 15 13 26 26 O 1.42901 * 109.46869 * 62.54333 * 25 24 15 27 27 C 1.46923 * 120.62923 * 181.96876 * 9 7 6 28 28 H 1.09000 * 109.47259 * 270.26864 * 1 2 3 29 29 H 1.09008 * 109.47050 * 30.27098 * 1 2 3 30 30 H 1.09004 * 109.47664 * 150.26743 * 1 2 3 31 31 H 1.08008 * 127.31333 * 180.02562 * 5 4 3 32 32 H 1.09004 * 109.58845 * 353.41115 * 10 9 7 33 33 H 1.08998 * 109.58734 * 113.84141 * 10 9 7 34 34 H 1.09001 * 109.49970 * 65.31634 * 11 10 9 35 35 H 1.08992 * 109.49892 * 185.38052 * 11 10 9 36 36 H 1.09002 * 109.45813 * 301.34296 * 12 11 10 37 37 H 1.09002 * 109.46055 * 181.38602 * 12 11 10 38 38 H 0.96997 * 120.00964 * 179.97438 * 19 18 16 39 39 H 1.09003 * 109.47462 * 37.67547 * 24 15 13 40 40 H 1.09000 * 109.46822 * 157.67534 * 24 15 13 41 41 H 1.09003 * 109.46836 * 182.54554 * 25 24 15 42 42 H 1.09002 * 109.46931 * 302.54292 * 25 24 15 43 43 H 0.96699 * 113.99297 * 179.97438 * 26 25 24 44 44 H 1.09005 * 109.59120 * 6.58872 * 27 9 7 45 45 H 1.08993 * 109.70950 * 246.22980 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1844 1.1039 0.0000 4 16 3.8311 0.7028 -0.0066 5 6 3.6016 -1.0020 -0.0012 6 6 2.2352 -1.1868 0.0062 7 6 1.6035 -2.5180 0.0132 8 8 0.5569 -2.6975 -0.5795 9 7 2.1857 -3.5366 0.6764 10 6 3.4276 -3.3250 1.4324 11 6 4.4697 -4.3458 0.9644 12 6 3.8891 -5.7562 1.0913 13 6 2.6532 -5.8833 0.1977 14 1 2.9282 -5.6743 -0.8361 15 7 2.1166 -7.2429 0.2957 16 6 1.7035 -7.7303 1.5069 17 1 0.9134 -7.2316 2.0486 18 6 2.3003 -8.8653 2.0384 19 7 1.6704 -9.5739 2.9513 20 14 3.9975 -9.3871 1.4580 21 1 5.0243 -8.8558 2.3899 22 1 4.0761 -10.8697 1.4277 23 1 4.2410 -8.8506 0.0949 24 6 2.0220 -8.0811 -0.9020 25 6 0.7476 -7.7286 -1.6719 26 8 0.8144 -6.3689 -2.1065 27 6 1.5906 -4.8798 0.6570 28 1 -0.3634 0.0048 1.0276 29 1 -0.3633 0.8876 -0.5181 30 1 -0.3634 -0.8924 -0.5097 31 1 4.3656 -1.7655 -0.0024 32 1 3.7980 -2.3159 1.2518 33 1 3.2353 -3.4610 2.4966 34 1 4.7280 -4.1510 -0.0765 35 1 5.3634 -4.2629 1.5827 36 1 3.6082 -5.9413 2.1281 37 1 4.6373 -6.4861 0.7821 38 1 2.0871 -10.3672 3.3225 39 1 2.8903 -7.9064 -1.5374 40 1 1.9911 -9.1306 -0.6094 41 1 0.6539 -8.3829 -2.5386 42 1 -0.1176 -7.8602 -1.0220 43 1 0.0379 -6.0761 -2.6028 44 1 0.7488 -4.8966 -0.0353 45 1 1.2467 -5.1440 1.6569 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692037366.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:35 Heat of formation + Delta-G solvation = -27.368091 kcal Electronic energy + Delta-G solvation = -28867.166994 eV Core-core repulsion = 25011.823310 eV Total energy + Delta-G solvation = -3855.343684 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.75383 -39.79999 -38.71052 -37.75176 -36.39178 -34.14104 -33.32069 -32.86258 -31.17375 -30.58020 -29.12918 -27.08255 -25.89893 -24.71495 -23.77635 -22.78626 -21.99641 -20.91329 -20.20549 -18.87725 -18.51637 -18.14695 -17.90483 -16.94089 -16.72348 -16.49059 -16.21044 -15.96418 -15.55193 -15.22810 -15.17817 -15.07583 -14.63181 -14.46139 -14.41957 -14.13767 -13.83346 -13.67027 -13.48427 -13.25165 -13.18486 -13.11960 -12.74472 -12.43955 -12.34803 -12.08895 -12.00790 -11.90916 -11.79348 -11.67938 -11.49023 -11.22152 -10.94068 -10.71909 -10.63678 -10.51288 -9.76202 -9.58582 -8.34716 -8.08453 -5.84782 -0.61990 0.33813 0.68357 0.79486 1.38000 1.44437 1.57191 1.89655 2.10927 2.46674 3.05979 3.37689 3.43957 3.54992 3.64203 3.89740 4.04340 4.06513 4.16061 4.28729 4.32032 4.37473 4.47368 4.51977 4.57340 4.60178 4.63314 4.67495 4.68518 4.77859 4.93479 5.01445 5.05413 5.10870 5.16989 5.17732 5.18968 5.45597 5.53655 5.58618 5.61585 6.01752 6.39478 6.45566 7.00744 7.10641 7.18130 7.60630 8.20978 8.97968 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017304 B = 0.003625 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.706208 B = 7722.128860 C = 8458.605286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.155 3.845 3 N -0.499 5.499 4 S 0.339 5.661 5 C -0.165 4.165 6 C -0.226 4.226 7 C 0.581 3.419 8 O -0.566 6.566 9 N -0.594 5.594 10 C 0.080 3.920 11 C -0.125 4.125 12 C -0.131 4.131 13 C 0.181 3.819 14 H 0.060 0.940 15 N -0.599 5.599 16 C -0.259 4.259 17 H 0.021 0.979 18 C 0.011 3.989 19 N -0.940 5.940 20 Si 0.931 3.069 21 H -0.284 1.284 22 H -0.305 1.305 23 H -0.242 1.242 24 C 0.143 3.857 25 C 0.066 3.934 26 O -0.575 6.575 27 C 0.127 3.873 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.229 0.771 32 H 0.125 0.875 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.264 0.736 39 H 0.049 0.951 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.024 0.976 43 H 0.382 0.618 44 H 0.071 0.929 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.939 17.396 -7.536 20.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.021 4.021 3 N -0.321 5.321 4 S 0.496 5.504 5 C -0.314 4.314 6 C -0.247 4.247 7 C 0.368 3.632 8 O -0.446 6.446 9 N -0.325 5.325 10 C -0.042 4.042 11 C -0.163 4.163 12 C -0.170 4.170 13 C 0.074 3.926 14 H 0.078 0.922 15 N -0.321 5.321 16 C -0.390 4.390 17 H 0.039 0.961 18 C -0.188 4.188 19 N -0.581 5.581 20 Si 0.757 3.243 21 H -0.210 1.210 22 H -0.232 1.232 23 H -0.165 1.165 24 C 0.017 3.983 25 C -0.013 4.013 26 O -0.381 6.381 27 C 0.003 3.997 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.245 0.755 32 H 0.142 0.858 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.122 0.878 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.043 0.957 43 H 0.229 0.771 44 H 0.090 0.910 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.861 19.195 -7.436 22.412 hybrid contribution -1.205 -2.769 0.139 3.023 sum 7.655 16.427 -7.297 19.537 Atomic orbital electron populations 1.20866 0.85786 1.05227 1.04324 1.21418 0.99792 0.86769 0.94132 1.76307 1.02344 1.26514 1.26944 1.83847 1.08272 0.94538 1.63790 1.28043 0.98927 1.05583 0.98826 1.20235 0.93508 0.94845 1.16134 1.17668 0.83746 0.83463 0.78364 1.90695 1.24318 1.83626 1.45991 1.48051 1.26360 1.08825 1.49302 1.22618 0.83495 1.01939 0.96110 1.21934 0.98292 0.92951 1.03124 1.21950 0.97527 0.97025 1.00530 1.20613 0.91024 0.84085 0.96839 0.92153 1.43952 1.73382 1.11554 1.03235 1.18161 1.13988 1.09870 0.96941 0.96125 1.26503 1.00036 0.97098 0.95166 1.70025 1.38706 1.16863 1.32463 0.85915 0.82335 0.75667 0.80400 1.21029 1.23222 1.16485 1.21317 0.94970 0.94338 0.87638 1.22739 0.99187 0.82872 0.96541 1.86489 1.46486 1.28518 1.76608 1.21778 0.97534 0.80035 1.00402 0.89413 0.89240 0.89025 0.75512 0.85820 0.91234 0.90281 0.87814 0.93338 0.93306 0.92701 0.93236 0.92594 0.92414 0.95717 0.77093 0.91013 0.94086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.35 9.93 71.23 0.71 -1.64 16 2 C 0.16 3.81 6.74 43.14 0.29 4.10 16 3 N -0.50 -11.47 11.97 -51.08 -0.61 -12.08 16 4 S 0.34 5.27 23.69 -56.49 -1.34 3.93 16 5 C -0.17 -2.72 8.86 67.74 0.60 -2.12 16 6 C -0.23 -5.47 5.42 -20.72 -0.11 -5.58 16 7 C 0.58 18.12 7.29 86.64 0.63 18.75 16 8 O -0.57 -21.38 13.91 -4.08 -0.06 -21.43 16 9 N -0.59 -18.20 2.97 -822.88 -2.45 -20.65 16 10 C 0.08 1.80 5.76 86.36 0.50 2.29 16 11 C -0.12 -2.76 5.92 30.67 0.18 -2.58 16 12 C -0.13 -4.46 4.51 30.62 0.14 -4.32 16 13 C 0.18 6.96 2.03 45.07 0.09 7.05 16 14 H 0.06 2.32 7.44 -2.39 -0.02 2.30 16 15 N -0.60 -26.73 1.51 -677.60 -1.02 -27.75 16 16 C -0.26 -13.87 8.14 84.03 0.68 -13.18 16 17 H 0.02 1.30 7.42 -2.91 -0.02 1.28 16 18 C 0.01 0.61 5.18 84.86 0.44 1.05 16 19 N -0.94 -56.13 13.97 21.65 0.30 -55.83 16 20 Si 0.93 42.92 25.40 68.60 1.74 44.66 16 21 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 22 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 23 H -0.24 -10.27 6.10 99.48 0.61 -9.67 16 24 C 0.14 5.77 4.33 86.38 0.37 6.15 16 25 C 0.07 2.34 7.40 71.98 0.53 2.87 16 26 O -0.57 -19.55 11.64 -148.98 -1.73 -21.29 16 27 C 0.13 4.91 5.76 86.37 0.50 5.40 16 28 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.09 2.54 5.55 -2.38 -0.01 2.52 16 31 H 0.23 2.39 6.14 -2.91 -0.02 2.37 16 32 H 0.12 1.95 3.21 -2.39 -0.01 1.94 16 33 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.05 1.90 7.70 -2.39 -0.02 1.89 16 37 H 0.05 1.72 7.06 -2.39 -0.02 1.70 16 38 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 39 H 0.05 1.87 8.01 -2.39 -0.02 1.85 16 40 H 0.06 2.39 6.55 -2.39 -0.02 2.37 16 41 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.38 9.89 9.12 -74.06 -0.68 9.22 16 44 H 0.07 3.11 6.26 -2.38 -0.01 3.09 16 45 H 0.04 1.82 7.08 -2.39 -0.02 1.80 16 Total: -1.00 -70.80 359.50 0.65 -70.15 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: 0.26 Total: 22.05 kcal Atomic # 6 Polarization: 12.69 SS G_CDS: 5.55 Total: 18.24 kcal Atomic # 7 Polarization: -112.52 SS G_CDS: -3.78 Total: -116.30 kcal Atomic # 8 Polarization: -40.93 SS G_CDS: -1.79 Total: -42.72 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.74 Total: 44.66 kcal Atomic # 16 Polarization: 5.27 SS G_CDS: -1.34 Total: 3.93 kcal Total: -70.80 0.65 -70.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692037366.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.781 kcal (2) G-P(sol) polarization free energy of solvation -70.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds