Wall clock time and date at job start Sat Apr 11 2020 05:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34330 * 126.44681 * 2 1 4 4 N 1.34474 * 107.66928 * 180.02562 * 3 2 1 5 5 C 1.30260 * 108.70400 * 359.97438 * 4 3 2 6 6 C 1.50694 * 125.62087 * 179.97438 * 5 4 3 7 7 N 1.46896 * 109.47036 * 90.03158 * 6 5 4 8 8 C 1.48564 * 110.99822 * 290.12345 * 7 6 5 9 9 C 1.54385 * 104.59611 * 200.96136 * 8 7 6 10 10 C 1.54256 * 105.05799 * 23.85003 * 9 8 7 11 11 H 1.08997 * 110.32581 * 241.00068 * 10 9 8 12 12 N 1.46506 * 110.31889 * 118.89936 * 10 9 8 13 13 C 1.46493 * 120.00091 * 301.45233 * 12 10 9 14 14 C 1.34780 * 119.99719 * 121.45241 * 12 10 9 15 15 O 1.21279 * 120.00426 * 0.02562 * 14 12 10 16 16 C 1.50703 * 119.99340 * 179.97438 * 14 12 10 17 17 S 1.81000 * 109.46640 * 180.02562 * 16 14 12 18 18 C 1.76204 * 100.00077 * 180.02562 * 17 16 14 19 19 H 1.07998 * 119.99794 * 359.97438 * 18 17 16 20 20 C 1.38797 * 119.99960 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00292 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99660 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47297 * 269.99524 * 22 20 18 24 24 H 1.48503 * 109.47261 * 149.99704 * 22 20 18 25 25 H 1.48500 * 109.47454 * 29.99697 * 22 20 18 26 26 C 1.48559 * 111.00411 * 174.70730 * 7 6 5 27 27 O 1.33971 * 108.75833 * 0.22658 * 5 4 3 28 28 H 1.09007 * 109.46766 * 89.97351 * 1 2 3 29 29 H 1.08998 * 109.47738 * 209.97285 * 1 2 3 30 30 H 1.08997 * 109.47096 * 329.97788 * 1 2 3 31 31 H 1.07998 * 126.16494 * 359.97438 * 3 2 1 32 32 H 1.08999 * 109.47307 * 330.02876 * 6 5 4 33 33 H 1.09001 * 109.47083 * 210.02839 * 6 5 4 34 34 H 1.08998 * 110.41252 * 82.18057 * 8 7 6 35 35 H 1.08999 * 110.51266 * 319.78711 * 8 7 6 36 36 H 1.09003 * 110.32148 * 264.96004 * 9 8 7 37 37 H 1.08993 * 110.32227 * 142.75151 * 9 8 7 38 38 H 1.09005 * 109.46950 * 270.00250 * 13 12 10 39 39 H 1.09006 * 109.47202 * 29.99706 * 13 12 10 40 40 H 1.09003 * 109.47462 * 150.00152 * 13 12 10 41 41 H 1.08997 * 109.46997 * 60.00690 * 16 14 12 42 42 H 1.08995 * 109.47631 * 299.99616 * 16 14 12 43 43 H 0.96998 * 119.99330 * 0.02562 * 21 20 18 44 44 H 1.09002 * 110.41148 * 40.25814 * 26 7 6 45 45 H 1.09000 * 110.41323 * 277.81732 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 -0.0006 5 6 3.5765 -0.6549 -0.0004 6 6 4.8004 -1.5341 -0.0014 7 7 5.1989 -1.8202 1.3832 8 6 5.7379 -0.6038 2.0442 9 6 6.5816 -1.1414 3.2200 10 6 6.9683 -2.5779 2.8120 11 1 6.5684 -3.2956 3.5282 12 7 8.4250 -2.7068 2.7231 13 6 9.1817 -1.8495 1.8075 14 6 9.0688 -3.6142 3.4838 15 8 8.4423 -4.3243 4.2415 16 6 10.5671 -3.7472 3.3920 17 16 11.1286 -5.0406 4.5268 18 6 12.8632 -4.9828 4.2225 19 1 13.2624 -4.2813 3.5050 20 6 13.7163 -5.8396 4.9041 21 7 13.2296 -6.6950 5.7783 22 14 15.5551 -5.7788 4.5809 23 1 15.8956 -6.7162 3.4806 24 1 16.2873 -6.1729 5.8113 25 1 15.9443 -4.3990 4.1939 26 6 6.3258 -2.7874 1.4240 27 8 2.3074 -1.0841 -0.0047 28 1 -0.3633 0.0005 -1.0277 29 1 -0.3634 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5142 31 1 1.9823 2.1112 -0.0004 32 1 5.6144 -1.0232 -0.5156 33 1 4.5758 -2.4688 -0.5153 34 1 4.9242 0.0200 2.4142 35 1 6.3645 -0.0396 1.3535 36 1 5.9902 -1.1542 4.1356 37 1 7.4754 -0.5323 3.3542 38 1 9.2620 -2.3371 0.8359 39 1 8.6667 -0.8955 1.6937 40 1 10.1795 -1.6779 2.2115 41 1 11.0332 -2.7995 3.6616 42 1 10.8466 -4.0126 2.3724 43 1 12.2748 -6.7268 5.9458 44 1 7.0449 -2.5667 0.6350 45 1 5.9549 -3.8077 1.3269 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698557913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:52 Heat of formation + Delta-G solvation = -0.149797 kcal Electronic energy + Delta-G solvation = -26386.537485 eV Core-core repulsion = 22532.374075 eV Total energy + Delta-G solvation = -3854.163410 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.67552 -40.29618 -38.54517 -35.47594 -34.99584 -33.36454 -32.53793 -31.87999 -29.74968 -28.87720 -27.79366 -26.57268 -25.34376 -24.81891 -22.63426 -21.92941 -21.36559 -21.04434 -19.14978 -18.26152 -17.41736 -17.26813 -17.06792 -16.32622 -16.00770 -15.45052 -15.19263 -15.00709 -14.65519 -14.42208 -14.10314 -13.84914 -13.70547 -13.57497 -13.39940 -13.11709 -13.01184 -12.79028 -12.59894 -12.42574 -12.33307 -12.15294 -11.97819 -11.93048 -11.68548 -11.64029 -11.52737 -10.95400 -10.91865 -10.88162 -10.20024 -9.58168 -9.50276 -9.18572 -9.02199 -8.92360 -8.66146 -8.22900 -6.68491 -6.63169 -4.01255 1.03109 2.19770 2.30246 2.74528 2.89902 3.28980 3.37192 3.39387 3.53588 3.56309 3.80669 4.22273 4.26712 4.30408 4.44657 4.59363 4.62692 4.78378 4.82281 4.89646 4.89912 4.91642 5.00213 5.05923 5.12599 5.13159 5.21295 5.29844 5.32180 5.42841 5.46950 5.51030 5.59910 5.66192 5.69530 5.75426 5.86653 5.90952 5.92646 5.98591 6.19771 6.40217 6.62238 7.36880 7.39277 7.91050 8.41317 8.49235 9.26116 10.80834 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.041728 B = 0.001785 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.853590 B =15683.825762 C =15922.365929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.047 4.047 3 C -0.045 4.045 4 N -0.477 5.477 5 C 0.201 3.799 6 C 0.140 3.860 7 N -0.506 5.506 8 C 0.037 3.963 9 C -0.136 4.136 10 C 0.140 3.860 11 H 0.115 0.885 12 N -0.617 5.617 13 C 0.076 3.924 14 C 0.534 3.466 15 O -0.514 6.514 16 C -0.127 4.127 17 S -0.117 6.117 18 C -0.608 4.608 19 H 0.066 0.934 20 C 0.035 3.965 21 N -0.884 5.884 22 Si 1.087 2.913 23 H -0.284 1.284 24 H -0.280 1.280 25 H -0.287 1.287 26 C 0.026 3.974 27 O -0.193 6.193 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.182 0.818 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.278 0.722 44 H 0.057 0.943 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.367 16.840 -15.164 31.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.101 4.101 3 C -0.184 4.184 4 N -0.206 5.206 5 C -0.006 4.006 6 C 0.011 3.989 7 N -0.232 5.232 8 C -0.091 4.091 9 C -0.175 4.175 10 C 0.036 3.964 11 H 0.133 0.867 12 N -0.353 5.353 13 C -0.067 4.067 14 C 0.322 3.678 15 O -0.388 6.388 16 C -0.278 4.278 17 S 0.109 5.891 18 C -0.756 4.756 19 H 0.084 0.916 20 C -0.175 4.175 21 N -0.518 5.518 22 Si 0.913 3.087 23 H -0.211 1.211 24 H -0.205 1.205 25 H -0.213 1.213 26 C -0.102 4.102 27 O -0.079 6.079 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.111 0.889 31 H 0.200 0.800 32 H 0.101 0.899 33 H 0.124 0.876 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -21.799 15.195 -13.338 29.731 hybrid contribution -0.573 1.773 -2.019 2.747 sum -22.372 16.967 -15.357 32.003 Atomic orbital electron populations 1.20282 0.83977 1.04526 1.03776 1.23520 0.95145 0.84633 1.06785 1.23061 0.87774 1.00343 1.07192 1.70431 1.23211 1.09118 1.17885 1.25873 0.84169 0.89901 1.00627 1.20510 0.88973 0.97527 0.91930 1.65372 1.34541 1.09870 1.13416 1.23158 0.98069 0.92014 0.95812 1.22742 1.00113 0.95903 0.98739 1.21673 0.79886 0.98019 0.96860 0.86736 1.47894 1.06248 1.38392 1.42797 1.21762 0.97150 0.94321 0.93477 1.20348 0.89645 0.78749 0.79083 1.90696 1.68130 1.42823 1.37156 1.23346 0.93498 1.05353 1.05619 1.84838 1.07406 1.44447 1.52411 1.23722 0.91048 1.28528 1.32257 0.91595 1.26051 1.06642 0.91989 0.92830 1.70770 1.16598 1.33690 1.30758 0.83291 0.72879 0.75917 0.76612 1.21055 1.20497 1.21308 1.23479 0.91536 0.97567 0.97628 1.84409 1.17755 1.36448 1.69325 0.89807 0.90196 0.88930 0.80045 0.89902 0.87593 0.89982 0.92939 0.90071 0.90178 0.92652 0.91296 0.90399 0.88959 0.88971 0.90943 0.92443 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.28 10.43 36.01 0.38 0.10 16 2 C -0.05 -0.39 7.39 -35.69 -0.26 -0.65 16 3 C -0.04 -0.39 11.80 -17.77 -0.21 -0.60 16 4 N -0.48 -5.11 11.29 -11.10 -0.13 -5.24 16 5 C 0.20 2.05 7.34 -12.95 -0.10 1.95 16 6 C 0.14 1.14 5.44 -4.98 -0.03 1.12 16 7 N -0.51 -4.84 5.36 -231.41 -1.24 -6.08 16 8 C 0.04 0.35 5.97 -2.18 -0.01 0.33 16 9 C -0.14 -1.38 6.17 -25.35 -0.16 -1.54 16 10 C 0.14 1.69 3.46 -66.55 -0.23 1.45 16 11 H 0.11 1.67 6.96 -51.93 -0.36 1.31 16 12 N -0.62 -8.30 2.79 -172.35 -0.48 -8.78 16 13 C 0.08 0.75 8.87 59.84 0.53 1.28 16 14 C 0.53 9.88 7.69 -10.98 -0.08 9.80 16 15 O -0.51 -11.50 15.22 5.56 0.08 -11.42 16 16 C -0.13 -2.55 4.71 36.01 0.17 -2.38 16 17 S -0.12 -3.15 19.60 -107.50 -2.11 -5.26 16 18 C -0.61 -17.44 9.50 30.94 0.29 -17.14 16 19 H 0.07 1.81 7.80 -52.49 -0.41 1.40 16 20 C 0.04 1.03 5.49 -17.43 -0.10 0.93 16 21 N -0.88 -27.48 13.67 55.49 0.76 -26.72 16 22 Si 1.09 24.89 29.92 -169.99 -5.09 19.81 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 26 C 0.03 0.25 6.09 -2.18 -0.01 0.24 16 27 O -0.19 -2.01 10.78 5.34 0.06 -1.95 16 28 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.18 1.04 8.06 -52.49 -0.42 0.61 16 32 H 0.08 0.59 7.88 -51.93 -0.41 0.18 16 33 H 0.11 0.71 8.13 -51.93 -0.42 0.29 16 34 H 0.08 0.84 8.12 -51.93 -0.42 0.42 16 35 H 0.05 0.46 7.83 -51.93 -0.41 0.05 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.79 6.97 -51.93 -0.36 0.43 16 38 H 0.05 0.49 7.89 -51.93 -0.41 0.08 16 39 H 0.07 0.54 6.84 -51.93 -0.35 0.19 16 40 H 0.08 0.79 6.44 -51.93 -0.33 0.46 16 41 H 0.09 1.72 7.40 -51.92 -0.38 1.34 16 42 H 0.09 1.72 8.11 -51.92 -0.42 1.30 16 43 H 0.28 8.84 7.12 -40.82 -0.29 8.55 16 44 H 0.06 0.50 6.73 -51.93 -0.35 0.15 16 45 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 383.29 15.07 5.78 5.78 Total: -1.00 -36.49 383.29 -8.85 -45.35 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -6.67 Total: -0.40 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: 0.18 Total: -5.10 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: -1.09 Total: -46.81 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.14 Total: -13.37 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -5.09 Total: 19.81 kcal Atomic # 16 Polarization: -3.15 SS G_CDS: -2.11 Total: -5.26 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.49 -8.85 -45.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698557913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.196 kcal (2) G-P(sol) polarization free energy of solvation -36.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds