Wall clock time and date at job start Sat Apr 11 2020 05:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34330 * 126.44681 * 2 1 4 4 N 1.34474 * 107.66928 * 180.02562 * 3 2 1 5 5 C 1.30260 * 108.70400 * 359.97438 * 4 3 2 6 6 C 1.50694 * 125.62087 * 179.97438 * 5 4 3 7 7 N 1.46896 * 109.47036 * 90.03158 * 6 5 4 8 8 C 1.48564 * 110.99822 * 290.12345 * 7 6 5 9 9 C 1.54385 * 104.59611 * 200.96136 * 8 7 6 10 10 C 1.54256 * 105.05799 * 23.85003 * 9 8 7 11 11 H 1.08997 * 110.32581 * 241.00068 * 10 9 8 12 12 N 1.46506 * 110.31889 * 118.89936 * 10 9 8 13 13 C 1.46493 * 120.00091 * 301.45233 * 12 10 9 14 14 C 1.34780 * 119.99719 * 121.45241 * 12 10 9 15 15 O 1.21279 * 120.00426 * 0.02562 * 14 12 10 16 16 C 1.50703 * 119.99340 * 179.97438 * 14 12 10 17 17 S 1.81000 * 109.46640 * 180.02562 * 16 14 12 18 18 C 1.76204 * 100.00077 * 180.02562 * 17 16 14 19 19 H 1.07998 * 119.99794 * 359.97438 * 18 17 16 20 20 C 1.38797 * 119.99960 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00292 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99660 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47297 * 269.99524 * 22 20 18 24 24 H 1.48503 * 109.47261 * 149.99704 * 22 20 18 25 25 H 1.48500 * 109.47454 * 29.99697 * 22 20 18 26 26 C 1.48559 * 111.00411 * 174.70730 * 7 6 5 27 27 O 1.33971 * 108.75833 * 0.22658 * 5 4 3 28 28 H 1.09007 * 109.46766 * 89.97351 * 1 2 3 29 29 H 1.08998 * 109.47738 * 209.97285 * 1 2 3 30 30 H 1.08997 * 109.47096 * 329.97788 * 1 2 3 31 31 H 1.07998 * 126.16494 * 359.97438 * 3 2 1 32 32 H 1.08999 * 109.47307 * 330.02876 * 6 5 4 33 33 H 1.09001 * 109.47083 * 210.02839 * 6 5 4 34 34 H 1.08998 * 110.41252 * 82.18057 * 8 7 6 35 35 H 1.08999 * 110.51266 * 319.78711 * 8 7 6 36 36 H 1.09003 * 110.32148 * 264.96004 * 9 8 7 37 37 H 1.08993 * 110.32227 * 142.75151 * 9 8 7 38 38 H 1.09005 * 109.46950 * 270.00250 * 13 12 10 39 39 H 1.09006 * 109.47202 * 29.99706 * 13 12 10 40 40 H 1.09003 * 109.47462 * 150.00152 * 13 12 10 41 41 H 1.08997 * 109.46997 * 60.00690 * 16 14 12 42 42 H 1.08995 * 109.47631 * 299.99616 * 16 14 12 43 43 H 0.96998 * 119.99330 * 0.02562 * 21 20 18 44 44 H 1.09002 * 110.41148 * 40.25814 * 26 7 6 45 45 H 1.09000 * 110.41323 * 277.81732 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 -0.0006 5 6 3.5765 -0.6549 -0.0004 6 6 4.8004 -1.5341 -0.0014 7 7 5.1989 -1.8202 1.3832 8 6 5.7379 -0.6038 2.0442 9 6 6.5816 -1.1414 3.2200 10 6 6.9683 -2.5779 2.8120 11 1 6.5684 -3.2956 3.5282 12 7 8.4250 -2.7068 2.7231 13 6 9.1817 -1.8495 1.8075 14 6 9.0688 -3.6142 3.4838 15 8 8.4423 -4.3243 4.2415 16 6 10.5671 -3.7472 3.3920 17 16 11.1286 -5.0406 4.5268 18 6 12.8632 -4.9828 4.2225 19 1 13.2624 -4.2813 3.5050 20 6 13.7163 -5.8396 4.9041 21 7 13.2296 -6.6950 5.7783 22 14 15.5551 -5.7788 4.5809 23 1 15.8956 -6.7162 3.4806 24 1 16.2873 -6.1729 5.8113 25 1 15.9443 -4.3990 4.1939 26 6 6.3258 -2.7874 1.4240 27 8 2.3074 -1.0841 -0.0047 28 1 -0.3633 0.0005 -1.0277 29 1 -0.3634 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5142 31 1 1.9823 2.1112 -0.0004 32 1 5.6144 -1.0232 -0.5156 33 1 4.5758 -2.4688 -0.5153 34 1 4.9242 0.0200 2.4142 35 1 6.3645 -0.0396 1.3535 36 1 5.9902 -1.1542 4.1356 37 1 7.4754 -0.5323 3.3542 38 1 9.2620 -2.3371 0.8359 39 1 8.6667 -0.8955 1.6937 40 1 10.1795 -1.6779 2.2115 41 1 11.0332 -2.7995 3.6616 42 1 10.8466 -4.0126 2.3724 43 1 12.2748 -6.7268 5.9458 44 1 7.0449 -2.5667 0.6350 45 1 5.9549 -3.8077 1.3269 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698557913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:51 Heat of formation + Delta-G solvation = -28.076232 kcal Electronic energy + Delta-G solvation = -26387.748466 eV Core-core repulsion = 22532.374075 eV Total energy + Delta-G solvation = -3855.374391 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.33255 -41.41317 -39.65653 -36.57578 -35.72532 -34.74132 -34.06724 -32.63366 -30.99096 -29.72300 -28.65629 -27.53537 -27.02446 -25.96305 -23.30392 -22.64211 -22.44723 -21.76703 -20.58711 -20.00685 -18.49401 -18.08806 -17.92248 -17.35716 -17.00056 -16.64361 -16.60772 -15.81358 -15.68646 -15.62693 -15.20552 -15.11449 -14.66195 -14.42966 -14.35797 -14.19109 -13.96343 -13.88217 -13.73402 -13.58099 -13.29155 -13.22804 -13.15382 -12.79772 -12.73751 -12.52216 -12.50444 -12.32527 -11.93539 -11.84466 -11.57848 -11.53375 -11.09912 -10.98753 -10.30984 -9.85489 -9.77938 -9.57164 -8.91899 -8.87036 -6.27277 0.38813 1.16303 1.44696 1.51959 1.57910 1.62052 1.69468 1.79973 1.96299 2.34341 2.84519 3.03170 3.09482 3.13079 3.39335 3.58100 3.68948 3.82982 3.97036 4.06368 4.07367 4.10683 4.14451 4.21664 4.28640 4.32654 4.36175 4.49285 4.57122 4.58626 4.66133 4.67649 4.71281 4.85780 4.89763 4.93621 5.03396 5.05714 5.17960 5.31736 5.32516 5.65066 5.68059 5.70549 6.14616 6.16876 6.70494 7.02805 7.07234 8.51567 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.041728 B = 0.001785 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.853590 B =15683.825762 C =15922.365929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.050 4.050 3 C -0.063 4.063 4 N -0.496 5.496 5 C 0.185 3.815 6 C 0.141 3.859 7 N -0.518 5.518 8 C 0.048 3.952 9 C -0.129 4.129 10 C 0.136 3.864 11 H 0.082 0.918 12 N -0.600 5.600 13 C 0.065 3.935 14 C 0.533 3.467 15 O -0.565 6.565 16 C -0.102 4.102 17 S -0.199 6.199 18 C -0.612 4.612 19 H 0.076 0.924 20 C -0.019 4.019 21 N -0.914 5.914 22 Si 1.139 2.861 23 H -0.268 1.268 24 H -0.280 1.280 25 H -0.262 1.262 26 C 0.038 3.962 27 O -0.212 6.212 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.114 0.886 31 H 0.205 0.795 32 H 0.098 0.902 33 H 0.119 0.881 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.260 0.740 44 H 0.078 0.922 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.262 19.171 -17.722 34.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.103 4.103 3 C -0.201 4.201 4 N -0.227 5.227 5 C -0.022 4.022 6 C 0.013 3.987 7 N -0.244 5.244 8 C -0.079 4.079 9 C -0.167 4.167 10 C 0.031 3.969 11 H 0.100 0.900 12 N -0.334 5.334 13 C -0.076 4.076 14 C 0.320 3.680 15 O -0.443 6.443 16 C -0.254 4.254 17 S 0.028 5.972 18 C -0.760 4.760 19 H 0.094 0.906 20 C -0.222 4.222 21 N -0.549 5.549 22 Si 0.957 3.043 23 H -0.193 1.193 24 H -0.205 1.205 25 H -0.186 1.186 26 C -0.091 4.091 27 O -0.099 6.099 28 H 0.117 0.883 29 H 0.099 0.901 30 H 0.132 0.868 31 H 0.222 0.778 32 H 0.116 0.884 33 H 0.137 0.863 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.115 0.885 40 H 0.097 0.903 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.071 0.929 44 H 0.096 0.904 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -21.736 17.582 -15.947 32.185 hybrid contribution -0.789 1.178 -1.295 1.920 sum -22.525 18.759 -17.243 34.009 Atomic orbital electron populations 1.20495 0.81261 1.05598 1.05081 1.24297 0.96663 0.84001 1.05320 1.23527 0.87313 1.01678 1.07594 1.70402 1.24406 1.09523 1.18329 1.26214 0.84601 0.90110 1.01234 1.20620 0.88804 0.98197 0.91110 1.65314 1.34478 1.09916 1.14703 1.23037 0.97607 0.91827 0.95468 1.22667 1.00488 0.94641 0.98942 1.21725 0.78821 0.98423 0.97898 0.89988 1.47841 1.07006 1.36902 1.41631 1.22110 0.97067 0.95072 0.93356 1.20118 0.88941 0.79450 0.79479 1.90685 1.68703 1.45248 1.39682 1.23230 0.94792 1.03094 1.04240 1.85102 1.07913 1.48471 1.55736 1.24049 0.91542 1.28382 1.32002 0.90585 1.27831 1.11456 0.91088 0.91846 1.70891 1.15542 1.35631 1.32843 0.82686 0.67071 0.77622 0.76945 1.19278 1.20545 1.18596 1.23329 0.91829 0.97562 0.96339 1.84411 1.18249 1.37567 1.69625 0.88250 0.90132 0.86799 0.77775 0.88384 0.86267 0.91033 0.91538 0.90884 0.89324 0.90532 0.88529 0.90277 0.87125 0.87055 0.92865 0.90438 0.89260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 10.43 71.24 0.74 0.34 16 2 C -0.05 -0.75 7.39 24.79 0.18 -0.56 16 3 C -0.06 -1.00 11.80 83.39 0.98 -0.02 16 4 N -0.50 -10.01 11.29 -303.83 -3.43 -13.44 16 5 C 0.19 3.54 7.34 88.34 0.65 4.19 16 6 C 0.14 2.04 5.44 85.56 0.47 2.50 16 7 N -0.52 -9.06 5.36 -886.06 -4.75 -13.81 16 8 C 0.05 0.81 5.97 86.45 0.52 1.33 16 9 C -0.13 -2.45 6.17 31.49 0.19 -2.26 16 10 C 0.14 3.15 3.46 45.88 0.16 3.31 16 11 H 0.08 2.49 6.96 -2.39 -0.02 2.47 16 12 N -0.60 -15.17 2.79 -817.58 -2.28 -17.45 16 13 C 0.07 1.06 8.87 127.77 1.13 2.19 16 14 C 0.53 19.61 7.69 87.66 0.67 20.29 16 15 O -0.56 -26.22 15.22 -3.03 -0.05 -26.26 16 16 C -0.10 -4.01 4.71 71.24 0.34 -3.68 16 17 S -0.20 -10.96 19.60 -56.49 -1.11 -12.07 16 18 C -0.61 -35.13 9.50 67.95 0.65 -34.49 16 19 H 0.08 4.07 7.80 -2.91 -0.02 4.05 16 20 C -0.02 -1.11 5.49 84.86 0.47 -0.64 16 21 N -0.91 -58.14 13.67 21.65 0.30 -57.85 16 22 Si 1.14 49.10 29.92 68.60 2.05 51.15 16 23 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 24 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 25 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 26 C 0.04 0.66 6.09 86.45 0.53 1.19 16 27 O -0.21 -4.23 10.78 -3.82 -0.04 -4.27 16 28 H 0.10 0.31 8.14 -2.38 -0.02 0.29 16 29 H 0.08 0.49 8.14 -2.39 -0.02 0.48 16 30 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.21 1.96 8.06 -2.91 -0.02 1.93 16 32 H 0.10 1.11 7.88 -2.39 -0.02 1.09 16 33 H 0.12 1.36 8.13 -2.39 -0.02 1.34 16 34 H 0.07 1.39 8.12 -2.39 -0.02 1.37 16 35 H 0.07 0.95 7.83 -2.39 -0.02 0.93 16 36 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.09 1.55 6.97 -2.39 -0.02 1.53 16 38 H 0.08 1.00 7.89 -2.38 -0.02 0.98 16 39 H 0.10 1.09 6.84 -2.38 -0.02 1.08 16 40 H 0.08 1.32 6.44 -2.39 -0.02 1.30 16 41 H 0.11 3.93 7.40 -2.40 -0.02 3.91 16 42 H 0.11 3.94 8.11 -2.40 -0.02 3.92 16 43 H 0.26 17.27 7.12 -92.71 -0.66 16.61 16 44 H 0.08 1.07 6.73 -2.39 -0.02 1.05 16 45 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -82.85 383.29 -0.53 -83.38 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 1.10 Total: 16.92 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: 7.67 Total: -6.31 kcal Atomic # 7 Polarization: -92.38 SS G_CDS: -10.17 Total: -102.54 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.09 Total: -30.53 kcal Atomic # 14 Polarization: 49.10 SS G_CDS: 2.05 Total: 51.15 kcal Atomic # 16 Polarization: -10.96 SS G_CDS: -1.11 Total: -12.07 kcal Total: -82.85 -0.53 -83.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698557913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.303 kcal (2) G-P(sol) polarization free energy of solvation -82.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds