Wall clock time and date at job start Sat Apr 11 2020 05:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35447 * 126.77736 * 2 1 4 4 C 1.41381 * 103.98571 * 180.14477 * 3 2 1 5 5 C 1.50703 * 126.80277 * 179.89297 * 4 3 2 6 6 N 1.46898 * 109.47398 * 94.70606 * 5 4 3 7 7 C 1.48529 * 110.99904 * 290.12911 * 6 5 4 8 8 C 1.54937 * 103.22900 * 159.72264 * 7 6 5 9 9 C 1.54600 * 103.07774 * 322.49131 * 8 7 6 10 10 C 1.52999 * 110.30622 * 140.96510 * 9 8 7 11 11 N 1.46498 * 110.30924 * 263.13060 * 9 8 7 12 12 C 1.34780 * 119.99893 * 298.54977 * 11 9 8 13 13 O 1.21274 * 120.00164 * 359.97438 * 12 11 9 14 14 C 1.50698 * 119.99604 * 180.02562 * 12 11 9 15 15 S 1.81005 * 109.46948 * 179.97438 * 14 12 11 16 16 C 1.76203 * 99.99847 * 180.02562 * 15 14 12 17 17 H 1.07997 * 120.00001 * 359.97438 * 16 15 14 18 18 C 1.38797 * 119.99846 * 180.02562 * 16 15 14 19 19 N 1.31637 * 119.99824 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00191 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46754 * 89.99751 * 20 18 16 22 22 H 1.48494 * 109.47412 * 209.99675 * 20 18 16 23 23 H 1.48499 * 109.47038 * 330.00039 * 20 18 16 24 24 C 1.47908 * 110.99908 * 47.51941 * 6 5 4 25 25 N 1.30181 * 106.39447 * 359.62428 * 4 3 2 26 26 O 1.20918 * 111.60283 * 0.24300 * 25 4 3 27 27 H 1.08999 * 109.46847 * 180.29907 * 1 2 3 28 28 H 1.09002 * 109.46592 * 300.29907 * 1 2 3 29 29 H 1.09000 * 109.47167 * 60.29437 * 1 2 3 30 30 H 1.08002 * 128.00983 * 0.02562 * 3 2 1 31 31 H 1.08997 * 109.46901 * 334.70432 * 5 4 3 32 32 H 1.09002 * 109.46593 * 214.70937 * 5 4 3 33 33 H 1.08997 * 110.67035 * 41.28008 * 7 6 5 34 34 H 1.09010 * 110.80567 * 278.22006 * 7 6 5 35 35 H 1.09002 * 110.72668 * 80.94033 * 8 7 6 36 36 H 1.08997 * 110.72428 * 204.05169 * 8 7 6 37 37 H 1.08996 * 109.47411 * 61.45222 * 10 9 8 38 38 H 1.09005 * 109.47394 * 181.45528 * 10 9 8 39 39 H 1.09006 * 109.47075 * 301.45371 * 10 9 8 40 40 H 0.96993 * 120.00012 * 118.54633 * 11 9 8 41 41 H 1.08999 * 109.47292 * 299.99858 * 14 12 11 42 42 H 1.08996 * 109.47355 * 59.99905 * 14 12 11 43 43 H 0.97008 * 119.99812 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.91763 * 333.50974 * 24 6 5 45 45 H 1.09000 * 109.91195 * 94.60460 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5372 -0.0035 5 6 4.9211 1.2999 -0.0072 6 7 5.4048 1.4501 1.3717 7 6 4.5427 2.3847 2.1394 8 6 4.8499 2.0206 3.6137 9 6 5.0089 0.4835 3.5686 10 6 6.1479 0.0403 4.4890 11 7 3.7562 -0.1689 3.9577 12 6 3.2452 0.0331 5.1884 13 8 3.8226 0.7545 5.9738 14 6 1.9569 -0.6385 5.5888 15 16 1.5366 -0.1736 7.2869 16 6 0.0350 -1.0734 7.4876 17 1 -0.3454 -1.6770 6.6768 18 6 -0.6595 -1.0057 8.6874 19 7 -0.1961 -0.2696 9.6755 20 14 -2.2518 -1.9590 8.9001 21 1 -1.9514 -3.3108 9.4365 22 1 -3.1386 -1.2366 9.8470 23 1 -2.9310 -2.0877 7.5858 24 6 5.3483 0.1620 2.0965 25 7 3.4764 -0.7565 0.0031 26 8 2.3095 -1.0737 0.0051 27 1 -0.3633 -1.0277 0.0054 28 1 -0.3632 0.5185 0.8873 29 1 -0.3633 0.5093 -0.8926 30 1 2.0346 2.1271 0.0004 31 1 4.7630 2.2850 -0.4461 32 1 5.6604 0.7550 -0.5943 33 1 3.4907 2.2127 1.9118 34 1 4.8151 3.4200 1.9340 35 1 5.7744 2.4946 3.9435 36 1 4.0205 2.3037 4.2618 37 1 5.9160 0.3226 5.5159 38 1 6.2650 -1.0417 4.4272 39 1 7.0743 0.5242 4.1796 40 1 3.2946 -0.7461 3.3296 41 1 1.1586 -0.3229 4.9171 42 1 2.0767 -1.7201 5.5277 43 1 -0.6813 -0.2226 10.5142 44 1 4.5723 -0.4719 1.6672 45 1 6.3136 -0.3406 2.0361 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699810225.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:21 Heat of formation + Delta-G solvation = 15.202468 kcal Electronic energy + Delta-G solvation = -27919.468963 eV Core-core repulsion = 24065.971277 eV Total energy + Delta-G solvation = -3853.497686 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.97440 -41.55482 -39.62454 -36.45791 -34.78598 -34.59180 -34.21589 -32.77342 -30.87853 -30.03052 -28.86500 -28.16899 -27.66788 -26.00825 -23.97512 -23.11298 -22.22744 -20.81222 -20.49523 -19.82129 -18.87255 -18.21027 -17.88461 -17.46016 -16.88812 -16.75716 -16.36986 -16.22727 -15.70735 -15.50322 -15.12984 -14.71538 -14.62563 -14.53713 -14.37698 -14.12017 -13.99866 -13.80612 -13.62606 -13.26167 -13.17738 -13.14149 -12.90703 -12.74363 -12.65279 -12.60289 -12.46916 -12.15290 -11.99856 -11.82490 -11.73763 -11.16281 -11.15238 -10.76862 -10.29725 -10.22159 -10.16346 -9.69285 -8.67377 -8.35655 -6.13592 0.47365 1.18511 1.24805 1.41640 1.45331 1.55872 1.58925 2.16430 2.20991 2.26614 2.90385 2.98608 3.22363 3.27516 3.34058 3.45342 3.66727 3.86530 3.91868 4.09897 4.20278 4.22734 4.25062 4.32040 4.34620 4.43064 4.45338 4.60044 4.67089 4.69275 4.71293 4.74763 4.81467 4.86238 4.88532 4.99348 5.04387 5.11553 5.22356 5.26414 5.40524 5.42854 5.73489 5.81031 6.18592 6.41300 7.05723 7.19830 7.25460 8.73461 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012319 B = 0.003294 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.426179 B = 8497.802844 C =10148.284960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.026 4.026 3 C -0.238 4.238 4 C -0.017 4.017 5 C 0.120 3.880 6 N -0.493 5.493 7 C 0.035 3.965 8 C -0.125 4.125 9 C 0.166 3.834 10 C -0.152 4.152 11 N -0.709 5.709 12 C 0.538 3.462 13 O -0.546 6.546 14 C -0.131 4.131 15 S -0.139 6.139 16 C -0.549 4.549 17 H 0.080 0.920 18 C 0.016 3.984 19 N -0.910 5.910 20 Si 0.997 3.003 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.257 1.257 24 C 0.028 3.972 25 N -0.382 5.382 26 O 0.079 5.921 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.189 0.811 31 H 0.122 0.878 32 H 0.099 0.901 33 H 0.050 0.950 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.057 0.943 37 H 0.049 0.951 38 H 0.058 0.942 39 H 0.084 0.916 40 H 0.402 0.598 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.271 0.729 44 H 0.068 0.932 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.724 2.820 -25.880 26.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 C -0.260 4.260 4 C -0.177 4.177 5 C -0.009 4.009 6 N -0.216 5.216 7 C -0.092 4.092 8 C -0.164 4.164 9 C 0.080 3.920 10 C -0.210 4.210 11 N -0.363 5.363 12 C 0.324 3.676 13 O -0.423 6.423 14 C -0.282 4.282 15 S 0.088 5.912 16 C -0.697 4.697 17 H 0.099 0.901 18 C -0.189 4.189 19 N -0.547 5.547 20 Si 0.818 3.182 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.181 1.181 24 C -0.101 4.101 25 N -0.090 5.090 26 O 0.015 5.985 27 H 0.107 0.893 28 H 0.116 0.884 29 H 0.130 0.870 30 H 0.206 0.794 31 H 0.140 0.860 32 H 0.117 0.883 33 H 0.068 0.932 34 H 0.123 0.877 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.238 0.762 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.074 3.251 -24.473 25.975 hybrid contribution -2.851 -1.197 -0.460 3.126 sum 5.223 2.054 -24.934 25.558 Atomic orbital electron populations 1.20561 0.81850 1.05697 1.05448 1.25144 0.97638 0.85547 1.00576 1.22739 0.90833 1.02000 1.10444 1.24712 0.99623 0.90382 1.02967 1.21100 0.88011 1.00345 0.91417 1.65220 1.47367 1.07552 1.01428 1.23361 0.95753 0.98378 0.91715 1.22807 1.02661 0.94182 0.96707 1.21256 0.83574 0.92865 0.94341 1.22113 0.97568 1.01441 0.99878 1.46059 1.25304 1.50669 1.14286 1.19930 0.85369 0.80531 0.81740 1.90667 1.61328 1.38403 1.51860 1.23374 0.98180 1.04104 1.02527 1.85510 1.30467 1.64849 1.10390 1.23202 1.09291 1.33851 1.03315 0.90138 1.26098 1.02215 0.96336 0.94264 1.70181 1.40709 1.39124 1.04678 0.84978 0.76528 0.77884 0.78764 1.19435 1.20171 1.18098 1.23476 1.03332 0.92751 0.90528 1.73883 0.97550 1.17178 1.20416 1.84805 1.11532 1.34278 1.67852 0.89253 0.88418 0.87036 0.79417 0.86000 0.88269 0.93200 0.87662 0.89673 0.92463 0.93160 0.92323 0.89682 0.76228 0.87831 0.88056 0.91958 0.91381 0.88405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.45 71.24 0.74 0.05 16 2 C -0.03 -0.40 7.49 25.04 0.19 -0.21 16 3 C -0.24 -3.56 9.79 22.40 0.22 -3.34 16 4 C -0.02 -0.30 4.92 43.58 0.21 -0.09 16 5 C 0.12 1.73 6.14 85.56 0.53 2.25 16 6 N -0.49 -8.71 5.54 -886.59 -4.91 -13.61 16 7 C 0.04 0.66 6.39 86.65 0.55 1.21 16 8 C -0.12 -3.14 5.80 31.80 0.18 -2.96 16 9 C 0.17 4.16 0.96 4.64 0.00 4.16 16 10 C -0.15 -4.00 8.17 71.98 0.59 -3.41 16 11 N -0.71 -20.00 5.16 -418.23 -2.16 -22.16 16 12 C 0.54 20.19 7.04 87.66 0.62 20.81 16 13 O -0.55 -24.52 12.73 -3.01 -0.04 -24.56 16 14 C -0.13 -5.30 6.16 71.24 0.44 -4.86 16 15 S -0.14 -7.71 20.57 -56.49 -1.16 -8.87 16 16 C -0.55 -31.31 9.50 67.95 0.65 -30.66 16 17 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 18 C 0.02 0.89 5.49 84.86 0.47 1.36 16 19 N -0.91 -55.69 13.22 21.65 0.29 -55.40 16 20 Si 1.00 43.29 29.55 68.60 2.03 45.31 16 21 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 22 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 23 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 24 C 0.03 0.57 5.93 86.61 0.51 1.08 16 25 N -0.38 -8.17 10.23 -49.55 -0.51 -8.68 16 26 O 0.08 1.60 11.20 71.62 0.80 2.40 16 27 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.19 1.95 8.06 -2.91 -0.02 1.93 16 31 H 0.12 1.19 8.08 -2.39 -0.02 1.18 16 32 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.05 0.96 6.17 -2.39 -0.01 0.94 16 34 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.08 2.08 7.86 -2.39 -0.02 2.07 16 36 H 0.06 1.82 6.57 -2.39 -0.02 1.80 16 37 H 0.05 1.68 6.31 -2.39 -0.02 1.67 16 38 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 40 H 0.40 9.95 8.11 -92.71 -0.75 9.19 16 41 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 42 H 0.10 3.83 8.14 -2.40 -0.02 3.81 16 43 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 44 H 0.07 1.49 3.93 -2.39 -0.01 1.48 16 45 H 0.10 1.92 7.71 -2.39 -0.02 1.90 16 Total: -1.00 -75.04 375.93 0.51 -74.53 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.27 Total: 25.64 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: 5.90 Total: -14.60 kcal Atomic # 7 Polarization: -92.57 SS G_CDS: -7.28 Total: -99.85 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: 0.76 Total: -22.16 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: -7.71 SS G_CDS: -1.16 Total: -8.87 kcal Total: -75.04 0.51 -74.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699810225.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.728 kcal (2) G-P(sol) polarization free energy of solvation -75.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds