Wall clock time and date at job start Sat Apr 11 2020 05:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29435 * 124.80571 * 2 1 4 4 C 1.30936 * 117.36522 * 180.02562 * 3 2 1 5 5 C 1.50698 * 122.90368 * 179.97438 * 4 3 2 6 6 C 1.35671 * 114.19287 * 359.97438 * 4 3 2 7 7 C 1.46681 * 126.13025 * 180.02562 * 6 4 3 8 8 O 1.21683 * 120.00166 * 0.02562 * 7 6 4 9 9 N 1.34772 * 119.99921 * 179.97438 * 7 6 4 10 10 C 1.46499 * 120.00116 * 174.69359 * 9 7 6 11 11 C 1.52994 * 109.54600 * 304.10972 * 10 9 7 12 12 N 1.46504 * 109.46969 * 305.58038 * 11 10 9 13 13 C 1.36936 * 120.00126 * 175.02881 * 12 11 10 14 14 H 1.07997 * 119.99920 * 359.97438 * 13 12 11 15 15 C 1.38811 * 119.99731 * 180.02562 * 13 12 11 16 16 N 1.31618 * 120.00332 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99805 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46788 * 60.00042 * 17 15 13 19 19 H 1.48500 * 109.46932 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47022 * 299.99983 * 17 15 13 21 21 C 1.53178 * 109.54712 * 183.92796 * 10 9 7 22 22 C 1.53287 * 109.06344 * 297.03291 * 21 10 9 23 23 O 1.42902 * 109.46038 * 302.44160 * 22 21 10 24 24 C 1.42912 * 114.09528 * 61.15837 * 23 22 21 25 25 C 1.53087 * 109.41289 * 298.83922 * 24 23 22 26 26 S 1.70958 * 124.80615 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.46711 * 269.95856 * 1 2 3 28 28 H 1.08995 * 109.47064 * 29.96261 * 1 2 3 29 29 H 1.09007 * 109.46770 * 149.96103 * 1 2 3 30 30 H 1.09001 * 109.46952 * 90.02294 * 5 4 3 31 31 H 1.09007 * 109.47010 * 210.02020 * 5 4 3 32 32 H 1.08995 * 109.47456 * 330.02125 * 5 4 3 33 33 H 0.97006 * 120.00329 * 354.69797 * 9 7 6 34 34 H 1.08999 * 109.47740 * 65.57835 * 11 10 9 35 35 H 1.09000 * 109.47607 * 185.58331 * 11 10 9 36 36 H 0.97005 * 119.99604 * 355.02650 * 12 11 10 37 37 H 0.96998 * 120.00130 * 180.02562 * 16 15 13 38 38 H 1.08992 * 109.52097 * 57.01725 * 21 10 9 39 39 H 1.08990 * 109.52736 * 177.21290 * 21 10 9 40 40 H 1.08991 * 109.45924 * 182.44620 * 22 21 10 41 41 H 1.08999 * 109.46845 * 62.44349 * 22 21 10 42 42 H 1.08997 * 109.47901 * 178.86083 * 24 23 22 43 43 H 1.08996 * 109.49150 * 58.83300 * 24 23 22 44 44 H 1.08995 * 109.53029 * 297.70468 * 25 24 23 45 45 H 1.09008 * 109.57199 * 177.54586 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2458 1.0628 0.0000 4 6 3.5441 0.8932 -0.0005 5 6 4.5197 2.0418 -0.0012 6 6 3.9352 -0.4059 -0.0004 7 6 5.3189 -0.8926 -0.0004 8 8 6.2425 -0.1004 0.0000 9 7 5.5673 -2.2172 0.0002 10 6 6.9439 -2.7044 -0.1171 11 6 7.5828 -2.1332 -1.3845 12 7 6.7405 -2.4488 -2.5408 13 6 7.0586 -1.9506 -3.7761 14 1 7.9303 -1.3247 -3.8977 15 6 6.2602 -2.2493 -4.8715 16 7 5.1976 -3.0117 -4.7232 17 14 6.6938 -1.5691 -6.5565 18 1 8.0414 -2.0507 -6.9528 19 1 5.6914 -2.0315 -7.5498 20 1 6.6934 -0.0850 -6.5062 21 6 6.9417 -4.2345 -0.1893 22 6 6.3721 -4.7965 1.1181 23 8 7.1493 -4.3214 2.2192 24 6 7.1494 -2.8995 2.3627 25 6 7.7504 -2.2614 1.1076 26 16 2.4828 -1.4037 -0.0006 27 1 -0.3632 -0.0007 1.0277 28 1 -0.3633 0.8903 -0.5132 29 1 -0.3633 -0.8897 -0.5145 30 1 4.7557 2.3186 1.0264 31 1 5.4330 1.7425 -0.5157 32 1 4.0763 2.8949 -0.5146 33 1 4.8346 -2.8481 0.0782 34 1 7.6771 -1.0516 -1.2882 35 1 8.5704 -2.5730 -1.5236 36 1 5.9574 -3.0107 -2.4314 37 1 4.6398 -3.2206 -5.4887 38 1 6.3244 -4.5587 -1.0270 39 1 7.9614 -4.5942 -0.3262 40 1 6.4078 -5.8855 1.0912 41 1 5.3389 -4.4694 1.2345 42 1 7.7450 -2.6220 3.2323 43 1 6.1265 -2.5472 2.4954 44 1 8.7864 -2.5813 0.9967 45 1 7.7119 -1.1756 1.1958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700252219.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:24 Heat of formation + Delta-G solvation = -25.597019 kcal Electronic energy + Delta-G solvation = -28797.319649 eV Core-core repulsion = 24942.052765 eV Total energy + Delta-G solvation = -3855.266885 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.65368 -39.82926 -38.17081 -35.77288 -33.69667 -32.97038 -31.83266 -31.07391 -30.41654 -29.24057 -28.02318 -26.48624 -23.77419 -23.49347 -22.94462 -22.18456 -21.44355 -19.49014 -19.17953 -17.68903 -17.23219 -16.95685 -15.96010 -15.85078 -15.49791 -15.38518 -14.79853 -14.64155 -14.37883 -14.21005 -13.94930 -13.57538 -13.37582 -13.25055 -13.09269 -12.77265 -12.56344 -12.48264 -12.39036 -12.18283 -12.01006 -11.82794 -11.55849 -11.25338 -11.20401 -10.91978 -10.79893 -10.54715 -10.35489 -10.10425 -9.85862 -9.69786 -9.55702 -9.40637 -9.31821 -8.81634 -8.71100 -8.54595 -6.87316 -5.75134 -3.01563 0.34256 1.23200 1.63702 2.55405 3.24371 3.45320 3.49303 3.50775 3.53257 3.93037 3.99691 4.59468 4.75089 4.85241 4.97704 5.02550 5.05376 5.11937 5.18201 5.21903 5.24583 5.31156 5.42646 5.60311 5.63701 5.72568 5.73863 5.80735 5.91349 5.94052 5.99460 6.02403 6.07033 6.19061 6.28151 6.42382 6.47568 6.54287 6.83049 7.00653 7.23312 7.62824 7.72960 7.77542 8.43996 8.45423 9.55638 10.12121 10.47869 11.47871 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007347 B = 0.005852 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3809.905347 B = 4783.513241 C = 7047.329938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.055 3.945 3 N -0.479 5.479 4 C 0.144 3.856 5 C -0.087 4.087 6 C -0.285 4.285 7 C 0.611 3.389 8 O -0.514 6.514 9 N -0.708 5.708 10 C 0.175 3.825 11 C 0.142 3.858 12 N -0.724 5.724 13 C -0.231 4.231 14 H 0.068 0.932 15 C -0.014 4.014 16 N -0.936 5.936 17 Si 0.905 3.095 18 H -0.286 1.286 19 H -0.292 1.292 20 H -0.287 1.287 21 C -0.156 4.156 22 C 0.060 3.940 23 O -0.385 6.385 24 C 0.066 3.934 25 C -0.163 4.163 26 S 0.160 5.840 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.391 0.609 34 H 0.051 0.949 35 H 0.022 0.978 36 H 0.381 0.619 37 H 0.254 0.746 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.044 0.956 42 H 0.090 0.910 43 H 0.046 0.954 44 H 0.079 0.921 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.550 0.542 15.780 17.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.221 4.221 3 N -0.195 5.195 4 C 0.007 3.993 5 C -0.146 4.146 6 C -0.409 4.409 7 C 0.396 3.604 8 O -0.392 6.392 9 N -0.359 5.359 10 C 0.090 3.910 11 C 0.013 3.987 12 N -0.369 5.369 13 C -0.362 4.362 14 H 0.086 0.914 15 C -0.210 4.210 16 N -0.585 5.585 17 Si 0.736 3.264 18 H -0.213 1.213 19 H -0.218 1.218 20 H -0.214 1.214 21 C -0.194 4.194 22 C -0.016 4.016 23 O -0.303 6.303 24 C -0.011 4.011 25 C -0.202 4.202 26 S 0.417 5.583 27 H 0.106 0.894 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.122 0.878 32 H 0.090 0.910 33 H 0.226 0.774 34 H 0.068 0.932 35 H 0.040 0.960 36 H 0.215 0.785 37 H 0.063 0.937 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.063 0.937 42 H 0.108 0.892 43 H 0.064 0.936 44 H 0.098 0.902 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.203 0.450 15.738 16.922 hybrid contribution -0.151 0.690 -1.392 1.561 sum -6.354 1.140 14.346 15.731 Atomic orbital electron populations 1.20495 0.84901 1.04609 1.03905 1.27287 1.01950 0.91297 1.01555 1.66056 1.04556 1.31321 1.17567 1.20606 0.89760 0.93759 0.95201 1.20644 0.97319 0.93472 1.03197 1.25517 0.98066 0.97061 1.20271 1.16419 0.85643 0.82460 0.75852 1.90700 1.43901 1.54937 1.49696 1.45813 1.09079 1.06066 1.74946 1.20632 0.80885 0.93351 0.96148 1.21092 0.93276 0.99154 0.85130 1.42193 1.30644 1.60751 1.03273 1.19164 1.07644 1.24111 0.85275 0.91402 1.24666 0.97683 1.00768 0.97845 1.69628 1.17231 1.41777 1.29864 0.86296 0.77233 0.78567 0.84305 1.21319 1.21773 1.21391 1.22486 1.04325 0.93945 0.98601 1.22639 0.93706 0.99396 0.85898 1.87900 1.71726 1.21541 1.49166 1.22515 1.00136 0.80755 0.97715 1.22566 1.00051 1.03337 0.94262 1.83789 0.96804 1.11551 1.66137 0.89399 0.89044 0.89763 0.90512 0.87798 0.91036 0.77423 0.93152 0.96000 0.78545 0.93669 0.89121 0.89252 0.88651 0.93727 0.89168 0.93592 0.90194 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.46 36.01 0.38 -0.29 16 2 C 0.05 0.71 7.39 -13.29 -0.10 0.61 16 3 N -0.48 -7.42 10.50 -7.70 -0.08 -7.50 16 4 C 0.14 2.37 6.79 -83.89 -0.57 1.80 16 5 C -0.09 -1.31 9.69 36.00 0.35 -0.96 16 6 C -0.29 -4.73 6.48 -37.09 -0.24 -4.97 16 7 C 0.61 10.83 7.19 -12.85 -0.09 10.74 16 8 O -0.51 -10.03 10.57 5.20 0.06 -9.98 16 9 N -0.71 -11.31 3.75 -48.73 -0.18 -11.49 16 10 C 0.18 2.84 0.32 -131.64 -0.04 2.80 16 11 C 0.14 2.94 4.79 -4.04 -0.02 2.92 16 12 N -0.72 -18.06 5.21 -59.91 -0.31 -18.37 16 13 C -0.23 -6.52 9.99 -15.06 -0.15 -6.68 16 14 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 15 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 16 N -0.94 -27.92 13.06 55.49 0.72 -27.19 16 17 Si 0.90 22.87 29.55 -169.99 -5.02 17.85 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 19 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 C -0.16 -2.26 4.84 -26.49 -0.13 -2.39 16 22 C 0.06 0.74 6.67 37.31 0.25 0.99 16 23 O -0.38 -5.15 10.77 -35.23 -0.38 -5.53 16 24 C 0.07 0.82 6.68 37.20 0.25 1.07 16 25 C -0.16 -2.33 4.82 -26.59 -0.13 -2.46 16 26 S 0.16 2.12 22.32 -107.50 -2.40 -0.28 16 27 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.10 1.78 6.01 -51.92 -0.31 1.46 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.39 5.64 6.60 -40.82 -0.27 5.37 16 34 H 0.05 1.15 6.25 -51.93 -0.32 0.83 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.38 9.75 6.51 -40.82 -0.27 9.49 16 37 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.09 1.46 7.22 -51.93 -0.37 1.08 16 39 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.04 0.50 7.01 -51.93 -0.36 0.14 16 42 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.05 0.58 7.75 -51.93 -0.40 0.18 16 44 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.10 1.48 6.25 -51.92 -0.32 1.16 16 LS Contribution 369.81 15.07 5.57 5.57 Total: -1.00 -33.25 369.81 -8.78 -42.03 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -6.41 Total: 12.21 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -0.34 Total: 2.69 kcal Atomic # 7 Polarization: -64.71 SS G_CDS: 0.15 Total: -64.56 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.32 Total: -15.51 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -2.40 Total: -0.28 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.25 -8.78 -42.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700252219.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.436 kcal (2) G-P(sol) polarization free energy of solvation -33.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds