Wall clock time and date at job start Sat Apr 11 2020 05:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29435 * 124.80571 * 2 1 4 4 C 1.30936 * 117.36522 * 180.02562 * 3 2 1 5 5 C 1.50698 * 122.90368 * 179.97438 * 4 3 2 6 6 C 1.35671 * 114.19287 * 359.97438 * 4 3 2 7 7 C 1.46681 * 126.13025 * 180.02562 * 6 4 3 8 8 O 1.21683 * 120.00166 * 0.02562 * 7 6 4 9 9 N 1.34772 * 119.99921 * 179.97438 * 7 6 4 10 10 C 1.46499 * 120.00116 * 174.69359 * 9 7 6 11 11 C 1.52994 * 109.54600 * 304.10972 * 10 9 7 12 12 N 1.46504 * 109.46969 * 305.58038 * 11 10 9 13 13 C 1.36936 * 120.00126 * 175.02881 * 12 11 10 14 14 H 1.07997 * 119.99920 * 359.97438 * 13 12 11 15 15 C 1.38811 * 119.99731 * 180.02562 * 13 12 11 16 16 N 1.31618 * 120.00332 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99805 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46788 * 60.00042 * 17 15 13 19 19 H 1.48500 * 109.46932 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47022 * 299.99983 * 17 15 13 21 21 C 1.53178 * 109.54712 * 183.92796 * 10 9 7 22 22 C 1.53287 * 109.06344 * 297.03291 * 21 10 9 23 23 O 1.42902 * 109.46038 * 302.44160 * 22 21 10 24 24 C 1.42912 * 114.09528 * 61.15837 * 23 22 21 25 25 C 1.53087 * 109.41289 * 298.83922 * 24 23 22 26 26 S 1.70958 * 124.80615 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.46711 * 269.95856 * 1 2 3 28 28 H 1.08995 * 109.47064 * 29.96261 * 1 2 3 29 29 H 1.09007 * 109.46770 * 149.96103 * 1 2 3 30 30 H 1.09001 * 109.46952 * 90.02294 * 5 4 3 31 31 H 1.09007 * 109.47010 * 210.02020 * 5 4 3 32 32 H 1.08995 * 109.47456 * 330.02125 * 5 4 3 33 33 H 0.97006 * 120.00329 * 354.69797 * 9 7 6 34 34 H 1.08999 * 109.47740 * 65.57835 * 11 10 9 35 35 H 1.09000 * 109.47607 * 185.58331 * 11 10 9 36 36 H 0.97005 * 119.99604 * 355.02650 * 12 11 10 37 37 H 0.96998 * 120.00130 * 180.02562 * 16 15 13 38 38 H 1.08992 * 109.52097 * 57.01725 * 21 10 9 39 39 H 1.08990 * 109.52736 * 177.21290 * 21 10 9 40 40 H 1.08991 * 109.45924 * 182.44620 * 22 21 10 41 41 H 1.08999 * 109.46845 * 62.44349 * 22 21 10 42 42 H 1.08997 * 109.47901 * 178.86083 * 24 23 22 43 43 H 1.08996 * 109.49150 * 58.83300 * 24 23 22 44 44 H 1.08995 * 109.53029 * 297.70468 * 25 24 23 45 45 H 1.09008 * 109.57199 * 177.54586 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2458 1.0628 0.0000 4 6 3.5441 0.8932 -0.0005 5 6 4.5197 2.0418 -0.0012 6 6 3.9352 -0.4059 -0.0004 7 6 5.3189 -0.8926 -0.0004 8 8 6.2425 -0.1004 0.0000 9 7 5.5673 -2.2172 0.0002 10 6 6.9439 -2.7044 -0.1171 11 6 7.5828 -2.1332 -1.3845 12 7 6.7405 -2.4488 -2.5408 13 6 7.0586 -1.9506 -3.7761 14 1 7.9303 -1.3247 -3.8977 15 6 6.2602 -2.2493 -4.8715 16 7 5.1976 -3.0117 -4.7232 17 14 6.6938 -1.5691 -6.5565 18 1 8.0414 -2.0507 -6.9528 19 1 5.6914 -2.0315 -7.5498 20 1 6.6934 -0.0850 -6.5062 21 6 6.9417 -4.2345 -0.1893 22 6 6.3721 -4.7965 1.1181 23 8 7.1493 -4.3214 2.2192 24 6 7.1494 -2.8995 2.3627 25 6 7.7504 -2.2614 1.1076 26 16 2.4828 -1.4037 -0.0006 27 1 -0.3632 -0.0007 1.0277 28 1 -0.3633 0.8903 -0.5132 29 1 -0.3633 -0.8897 -0.5145 30 1 4.7557 2.3186 1.0264 31 1 5.4330 1.7425 -0.5157 32 1 4.0763 2.8949 -0.5146 33 1 4.8346 -2.8481 0.0782 34 1 7.6771 -1.0516 -1.2882 35 1 8.5704 -2.5730 -1.5236 36 1 5.9574 -3.0107 -2.4314 37 1 4.6398 -3.2206 -5.4887 38 1 6.3244 -4.5587 -1.0270 39 1 7.9614 -4.5942 -0.3262 40 1 6.4078 -5.8855 1.0912 41 1 5.3389 -4.4694 1.2345 42 1 7.7450 -2.6220 3.2323 43 1 6.1265 -2.5472 2.4954 44 1 8.7864 -2.5813 0.9967 45 1 7.7119 -1.1756 1.1958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700252219.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:24 Heat of formation + Delta-G solvation = -49.122584 kcal Electronic energy + Delta-G solvation = -28798.339794 eV Core-core repulsion = 24942.052765 eV Total energy + Delta-G solvation = -3856.287030 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.92534 -40.97404 -39.37325 -37.24576 -35.51614 -34.05064 -33.31557 -32.32749 -32.06120 -30.19213 -29.22807 -28.14457 -25.46734 -24.72222 -23.99947 -23.51784 -22.88397 -20.68278 -20.51568 -19.30964 -18.78935 -18.15520 -17.09620 -17.02666 -16.87888 -16.62910 -16.30864 -15.95118 -15.79964 -15.46391 -15.21717 -15.06219 -14.89528 -14.46566 -14.27297 -14.16305 -13.88588 -13.68967 -13.41663 -13.25950 -13.23851 -13.08060 -12.94902 -12.84982 -12.77362 -12.40379 -12.33505 -12.17589 -11.98341 -11.69538 -11.42176 -11.07421 -10.92529 -10.70671 -10.54910 -10.52361 -10.01388 -9.69903 -8.96814 -7.96626 -5.22505 -0.79220 0.15214 0.51813 1.37133 1.42324 1.44625 1.50361 1.94542 2.23043 2.52935 2.93399 3.00306 3.35986 3.50918 3.72249 3.81274 3.82983 3.89581 3.97971 4.06474 4.22136 4.25684 4.42166 4.51861 4.60411 4.63003 4.66100 4.70713 4.72368 4.77275 4.83542 4.85091 4.86123 5.00965 5.08482 5.09566 5.12885 5.18024 5.30696 5.45320 5.56134 6.21389 6.25574 6.39739 6.58449 7.13209 7.33445 8.06440 8.34667 9.25865 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007347 B = 0.005852 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3809.905347 B = 4783.513241 C = 7047.329938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.063 3.937 3 N -0.504 5.504 4 C 0.135 3.865 5 C -0.083 4.083 6 C -0.326 4.326 7 C 0.604 3.396 8 O -0.542 6.542 9 N -0.701 5.701 10 C 0.180 3.820 11 C 0.143 3.857 12 N -0.727 5.727 13 C -0.242 4.242 14 H 0.062 0.938 15 C -0.066 4.066 16 N -0.960 5.960 17 Si 0.964 3.036 18 H -0.278 1.278 19 H -0.291 1.291 20 H -0.287 1.287 21 C -0.149 4.149 22 C 0.064 3.936 23 O -0.389 6.389 24 C 0.071 3.929 25 C -0.156 4.156 26 S 0.196 5.804 27 H 0.115 0.885 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.399 0.601 34 H 0.027 0.973 35 H 0.022 0.978 36 H 0.376 0.624 37 H 0.251 0.749 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.118 0.882 41 H 0.057 0.943 42 H 0.112 0.888 43 H 0.047 0.953 44 H 0.084 0.916 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.908 -0.246 16.785 18.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.212 4.212 3 N -0.220 5.220 4 C -0.003 4.003 5 C -0.142 4.142 6 C -0.450 4.450 7 C 0.391 3.609 8 O -0.422 6.422 9 N -0.352 5.352 10 C 0.094 3.906 11 C 0.016 3.984 12 N -0.371 5.371 13 C -0.374 4.374 14 H 0.080 0.920 15 C -0.259 4.259 16 N -0.611 5.611 17 Si 0.794 3.206 18 H -0.204 1.204 19 H -0.217 1.217 20 H -0.214 1.214 21 C -0.187 4.187 22 C -0.012 4.012 23 O -0.308 6.308 24 C -0.006 4.006 25 C -0.195 4.195 26 S 0.454 5.546 27 H 0.133 0.867 28 H 0.115 0.885 29 H 0.123 0.877 30 H 0.110 0.890 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.235 0.765 34 H 0.045 0.955 35 H 0.040 0.960 36 H 0.209 0.791 37 H 0.060 0.940 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.136 0.864 41 H 0.075 0.925 42 H 0.130 0.870 43 H 0.066 0.934 44 H 0.103 0.897 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.551 -0.361 16.768 18.393 hybrid contribution 0.226 0.965 -1.695 1.963 sum -7.325 0.604 15.073 16.770 Atomic orbital electron populations 1.20784 0.81500 1.05853 1.05977 1.28183 1.03813 0.90649 0.98573 1.66132 1.04129 1.32356 1.19375 1.20844 0.90588 0.94065 0.94834 1.20568 0.96176 0.93558 1.03878 1.25518 0.98775 0.98143 1.22583 1.16700 0.86136 0.82674 0.75411 1.90680 1.44953 1.55593 1.50954 1.45733 1.09229 1.05810 1.74448 1.20535 0.81036 0.94373 0.94634 1.21127 0.93182 0.97947 0.86164 1.42235 1.30909 1.60396 1.03518 1.19448 1.07395 1.23742 0.86823 0.91962 1.25364 0.97937 1.01567 1.01009 1.69754 1.17993 1.42881 1.30438 0.85359 0.77227 0.77693 0.80368 1.20403 1.21655 1.21416 1.22423 1.04219 0.92410 0.99695 1.22714 0.93898 1.00575 0.84022 1.87907 1.71976 1.21678 1.49225 1.22533 1.00456 0.80356 0.97206 1.22493 1.00144 1.02581 0.94311 1.83548 0.94793 1.10697 1.65561 0.86694 0.88507 0.87713 0.89031 0.90339 0.90188 0.76494 0.95515 0.96048 0.79050 0.94026 0.90751 0.89331 0.86380 0.92520 0.87047 0.93446 0.89709 0.90126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 10.46 71.24 0.75 -0.37 16 2 C 0.06 1.51 7.39 88.46 0.65 2.16 16 3 N -0.50 -15.19 10.50 -178.28 -1.87 -17.07 16 4 C 0.13 4.49 6.79 42.10 0.29 4.77 16 5 C -0.08 -2.57 9.69 71.24 0.69 -1.88 16 6 C -0.33 -10.91 6.48 23.88 0.15 -10.76 16 7 C 0.60 22.00 7.19 86.45 0.62 22.62 16 8 O -0.54 -22.14 10.57 -4.29 -0.05 -22.18 16 9 N -0.70 -22.55 3.75 -426.31 -1.60 -24.14 16 10 C 0.18 5.86 0.32 3.72 0.00 5.86 16 11 C 0.14 6.14 4.79 86.38 0.41 6.55 16 12 N -0.73 -37.14 5.21 -343.46 -1.79 -38.93 16 13 C -0.24 -13.95 9.99 84.03 0.84 -13.11 16 14 H 0.06 3.58 7.83 -2.91 -0.02 3.56 16 15 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 16 N -0.96 -57.69 13.06 21.65 0.28 -57.41 16 17 Si 0.96 47.33 29.55 68.60 2.03 49.36 16 18 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 19 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 20 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 21 C -0.15 -4.24 4.84 30.75 0.15 -4.09 16 22 C 0.06 1.43 6.67 72.08 0.48 1.91 16 23 O -0.39 -9.48 10.77 -148.98 -1.60 -11.08 16 24 C 0.07 1.66 6.68 72.01 0.48 2.14 16 25 C -0.16 -4.42 4.82 30.68 0.15 -4.27 16 26 S 0.20 4.94 22.32 -56.49 -1.26 3.68 16 27 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.09 2.47 8.14 -2.39 -0.02 2.46 16 31 H 0.08 2.85 6.01 -2.38 -0.01 2.83 16 32 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.40 11.33 6.60 -92.70 -0.61 10.72 16 34 H 0.03 1.29 6.25 -2.39 -0.01 1.27 16 35 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.38 19.68 6.51 -92.70 -0.60 19.08 16 37 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 38 H 0.07 2.37 7.22 -2.39 -0.02 2.36 16 39 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.06 1.14 7.01 -2.39 -0.02 1.12 16 42 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.05 1.11 7.75 -2.39 -0.02 1.09 16 44 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.08 2.56 6.25 -2.38 -0.01 2.54 16 Total: -1.00 -72.41 369.81 0.09 -72.32 By element: Atomic # 1 Polarization: 37.45 SS G_CDS: -0.18 Total: 37.27 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 6.13 Total: 8.18 kcal Atomic # 7 Polarization: -132.57 SS G_CDS: -4.98 Total: -137.55 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -1.65 Total: -33.27 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Atomic # 16 Polarization: 4.94 SS G_CDS: -1.26 Total: 3.68 kcal Total: -72.41 0.09 -72.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700252219.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.196 kcal (2) G-P(sol) polarization free energy of solvation -72.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds