Wall clock time and date at job start Sat Apr 11 2020 05:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.41372 * 126.80039 * 2 1 4 4 C 1.35454 * 103.98740 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.78239 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.47053 * 89.99598 * 5 4 3 7 7 C 1.46901 * 110.99938 * 180.02562 * 6 5 4 8 8 H 1.08995 * 110.89137 * 328.88523 * 7 6 5 9 9 C 1.55132 * 110.90299 * 92.97953 * 7 6 5 10 10 N 1.47431 * 104.71955 * 155.27732 * 9 7 6 11 11 C 1.34773 * 125.64646 * 155.81909 * 10 9 7 12 12 O 1.21283 * 120.00144 * 359.71291 * 11 10 9 13 13 C 1.50705 * 119.99721 * 179.71335 * 11 10 9 14 14 S 1.81000 * 109.46942 * 180.02562 * 13 11 10 15 15 C 1.76195 * 100.00017 * 180.02562 * 14 13 11 16 16 H 1.08004 * 120.00294 * 359.97438 * 15 14 13 17 17 C 1.38802 * 120.00153 * 180.02562 * 15 14 13 18 18 N 1.31632 * 120.00093 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00020 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.47297 * 90.00077 * 19 17 15 21 21 H 1.48503 * 109.47261 * 330.00257 * 19 17 15 22 22 H 1.48500 * 109.47454 * 210.00251 * 19 17 15 23 23 C 1.47022 * 108.70107 * 335.55038 * 10 9 7 24 24 C 1.54317 * 107.27411 * 1.28941 * 23 10 9 25 25 H 1.08997 * 110.72161 * 140.73282 * 24 23 10 26 26 C 1.53004 * 110.72053 * 263.83169 * 24 23 10 27 27 O 1.34039 * 106.44304 * 0.23676 * 4 3 2 28 28 N 1.20932 * 111.56925 * 359.56928 * 27 4 3 29 29 H 1.09000 * 109.46832 * 90.00142 * 1 2 3 30 30 H 1.08999 * 109.47129 * 209.99892 * 1 2 3 31 31 H 1.08994 * 109.46838 * 330.00199 * 1 2 3 32 32 H 1.08002 * 128.01087 * 0.03288 * 3 2 1 33 33 H 1.09001 * 109.46586 * 330.00226 * 5 4 3 34 34 H 1.09000 * 109.47360 * 209.99596 * 5 4 3 35 35 H 1.00900 * 111.00563 * 303.95739 * 6 5 4 36 36 H 1.08993 * 110.49897 * 36.43293 * 9 7 6 37 37 H 1.09000 * 110.34260 * 274.03783 * 9 7 6 38 38 H 1.08997 * 109.46935 * 60.00104 * 13 11 10 39 39 H 1.09000 * 109.47082 * 299.99666 * 13 11 10 40 40 H 0.97006 * 119.99745 * 179.97438 * 18 17 15 41 41 H 1.09003 * 109.88009 * 120.71121 * 23 10 9 42 42 H 1.09001 * 109.88122 * 241.71490 * 23 10 9 43 43 H 1.08991 * 109.47553 * 58.54232 * 26 24 23 44 44 H 1.09002 * 109.47127 * 178.54861 * 26 24 23 45 45 H 1.09003 * 109.47065 * 298.54217 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6025 0.6068 -0.0006 5 6 4.9022 1.3695 -0.0014 6 7 5.3252 1.6176 1.3833 7 6 6.5915 2.3613 1.4217 8 1 7.2125 2.1161 0.5603 9 6 6.3339 3.8885 1.5118 10 7 7.5512 4.4375 2.1365 11 6 7.9950 5.7040 2.0123 12 8 7.3782 6.4991 1.3352 13 6 9.2576 6.1323 2.7148 14 16 9.5860 7.8757 2.3559 15 6 11.0725 8.1024 3.2742 16 1 11.4948 7.2784 3.8303 17 6 11.7004 9.3402 3.2838 18 7 12.8107 9.5097 3.9703 19 14 10.9698 10.7656 2.3227 20 1 10.0258 11.5153 3.1900 21 1 10.2442 10.2430 1.1371 22 1 12.0585 11.6718 1.8769 23 6 8.1975 3.3763 2.9224 24 6 7.3515 2.0974 2.7484 25 1 7.9923 1.2201 2.6610 26 6 6.3704 1.9350 3.9112 27 8 3.4538 -0.7253 -0.0062 28 7 2.2868 -1.0424 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 2.0710 2.1743 0.0005 33 1 4.7648 2.3209 -0.5153 34 1 5.6658 0.7857 -0.5155 35 1 4.6062 2.1015 1.9000 36 1 5.4629 4.0925 2.1345 37 1 6.1960 4.3089 0.5157 38 1 10.0922 5.5253 2.3642 39 1 9.1381 5.9994 3.7901 40 1 13.2497 10.3747 3.9767 41 1 9.2086 3.2050 2.5531 42 1 8.2304 3.6615 3.9739 43 1 5.7202 2.8082 3.9627 44 1 5.7666 1.0411 3.7550 45 1 6.9255 1.8399 4.8444 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700255094.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:32 Heat of formation + Delta-G solvation = 28.818295 kcal Electronic energy + Delta-G solvation = -26210.551287 eV Core-core repulsion = 22357.644028 eV Total energy + Delta-G solvation = -3852.907260 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.28461 -40.32840 -38.18341 -35.93196 -35.12058 -32.99667 -32.45885 -31.78419 -30.12649 -29.09532 -28.05105 -26.73749 -25.73075 -25.47307 -23.47015 -23.03952 -20.67530 -20.06664 -19.51218 -18.01030 -17.96755 -17.59256 -16.82665 -16.47747 -16.04051 -15.16013 -15.08596 -14.94927 -14.80683 -14.56758 -14.39813 -13.84540 -13.81448 -13.62980 -13.46590 -13.21319 -13.06055 -13.04820 -12.84082 -12.80854 -12.45462 -12.22665 -11.99891 -11.59336 -11.41127 -11.28998 -11.16936 -11.03450 -10.96840 -10.64557 -10.40625 -9.92428 -9.87485 -9.60290 -9.03901 -9.02489 -8.64151 -8.53005 -6.95066 -6.30965 -4.03127 1.01772 1.80716 2.59203 2.67566 2.87658 3.12974 3.31162 3.48251 3.53495 3.68175 3.78832 3.97438 4.16191 4.26863 4.31095 4.52233 4.59472 4.66251 4.67900 4.78561 4.84775 4.92793 5.00837 5.01619 5.06493 5.08060 5.13859 5.24939 5.32230 5.36081 5.39312 5.46257 5.48378 5.57515 5.68432 5.73323 5.76659 5.87070 5.98380 6.08270 6.20722 6.36538 6.70175 7.49459 7.89841 7.92013 8.36236 8.39589 9.15100 10.78176 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027384 B = 0.001897 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.232839 B =14755.190138 C =15401.705718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.014 3.986 3 C -0.228 4.228 4 C -0.019 4.019 5 C 0.133 3.867 6 N -0.667 5.667 7 C 0.079 3.921 8 H 0.100 0.900 9 C 0.082 3.918 10 N -0.621 5.621 11 C 0.548 3.452 12 O -0.519 6.519 13 C -0.117 4.117 14 S -0.143 6.143 15 C -0.521 4.521 16 H 0.088 0.912 17 C 0.096 3.904 18 N -0.879 5.879 19 Si 0.856 3.144 20 H -0.267 1.267 21 H -0.236 1.236 22 H -0.274 1.274 23 C 0.101 3.899 24 C -0.089 4.089 25 H 0.094 0.906 26 C -0.140 4.140 27 O 0.109 5.891 28 N -0.365 5.365 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.171 0.829 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.350 0.650 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.271 0.729 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.051 0.949 44 H 0.070 0.930 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.057 -21.092 -5.918 29.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.145 4.145 3 C -0.250 4.250 4 C -0.083 4.083 5 C 0.004 3.996 6 N -0.298 5.298 7 C -0.032 4.032 8 H 0.118 0.882 9 C -0.043 4.043 10 N -0.358 5.358 11 C 0.336 3.664 12 O -0.393 6.393 13 C -0.268 4.268 14 S 0.083 5.917 15 C -0.669 4.669 16 H 0.106 0.894 17 C -0.113 4.113 18 N -0.516 5.516 19 Si 0.681 3.319 20 H -0.192 1.192 21 H -0.160 1.160 22 H -0.199 1.199 23 C -0.023 4.023 24 C -0.108 4.108 25 H 0.113 0.887 26 C -0.198 4.198 27 O 0.042 5.958 28 N -0.069 5.069 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.188 0.812 33 H 0.090 0.910 34 H 0.119 0.881 35 H 0.170 0.830 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.718 -21.651 -6.803 30.729 hybrid contribution 0.281 1.581 0.367 1.647 sum -20.437 -20.070 -6.436 29.358 Atomic orbital electron populations 1.20174 0.85927 1.03869 1.03412 1.23610 0.99116 0.88795 1.02968 1.22490 0.91299 1.01257 1.09962 1.24279 0.97665 0.83945 1.02459 1.20426 0.90402 0.97364 0.91417 1.60529 1.05777 1.51863 1.11679 1.22880 0.91123 0.89900 0.99294 0.88173 1.22910 0.88618 0.93755 0.99014 1.48304 1.26106 1.10163 1.51247 1.20025 0.85970 0.79659 0.80743 1.90705 1.58124 1.50701 1.39811 1.23250 0.96898 1.03388 1.03242 1.84783 1.34105 1.05268 1.67509 1.22301 1.08524 1.01447 1.34612 0.89357 1.24709 0.94008 0.98109 0.94444 1.69939 1.17101 1.24857 1.39695 0.86739 0.79859 0.82793 0.82481 1.19205 1.15955 1.19908 1.22226 0.96912 0.86527 0.96616 1.22188 0.96849 0.97095 0.94687 0.88748 1.21709 0.99016 1.02342 0.96710 1.84843 1.21420 1.22669 1.66898 1.73882 0.89391 1.24170 1.19495 0.90156 0.90528 0.89952 0.81162 0.91032 0.88058 0.83035 0.91611 0.90496 0.88469 0.88546 0.91924 0.90909 0.90805 0.93000 0.91084 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.48 36.01 0.38 -0.02 16 2 C 0.01 0.11 7.33 -82.10 -0.60 -0.49 16 3 C -0.23 -1.55 11.06 -39.38 -0.44 -1.99 16 4 C -0.02 -0.14 7.00 -35.30 -0.25 -0.39 16 5 C 0.13 0.71 6.11 -4.98 -0.03 0.68 16 6 N -0.67 -3.92 5.32 -105.60 -0.56 -4.48 16 7 C 0.08 0.54 3.19 -65.44 -0.21 0.33 16 8 H 0.10 0.66 7.83 -51.93 -0.41 0.25 16 9 C 0.08 0.80 6.18 -2.40 -0.01 0.79 16 10 N -0.62 -7.92 3.32 -170.38 -0.57 -8.49 16 11 C 0.55 9.74 7.87 -10.98 -0.09 9.66 16 12 O -0.52 -11.15 16.12 5.56 0.09 -11.06 16 13 C -0.12 -2.26 5.35 36.01 0.19 -2.07 16 14 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 16 15 C -0.52 -14.91 10.04 30.94 0.31 -14.60 16 16 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 17 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 18 N -0.88 -26.34 13.97 55.49 0.78 -25.56 16 19 Si 0.86 21.64 27.74 -169.99 -4.71 16.92 16 20 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 22 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 23 C 0.10 0.96 6.06 -3.07 -0.02 0.94 16 24 C -0.09 -0.63 3.56 -88.79 -0.32 -0.95 16 25 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 26 C -0.14 -0.97 8.27 37.16 0.31 -0.66 16 27 O 0.11 1.05 11.20 17.18 0.19 1.25 16 28 N -0.37 -3.81 12.07 33.42 0.40 -3.41 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.17 0.78 8.06 -52.49 -0.42 0.35 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.10 0.48 8.09 -51.93 -0.42 0.06 16 35 H 0.35 1.98 7.81 -39.29 -0.31 1.67 16 36 H 0.07 0.62 7.31 -51.93 -0.38 0.24 16 37 H 0.08 0.83 8.03 -51.93 -0.42 0.41 16 38 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 39 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 40 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.71 7.85 -51.93 -0.41 0.30 16 43 H 0.05 0.39 7.42 -51.93 -0.39 0.00 16 44 H 0.07 0.49 7.65 -51.93 -0.40 0.09 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 386.88 15.07 5.83 5.83 Total: -1.00 -34.95 386.88 -8.34 -43.29 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -6.92 Total: -2.63 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -0.87 Total: -6.06 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.05 Total: -41.94 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.28 Total: -9.81 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.71 Total: 16.92 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.95 -8.34 -43.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700255094.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.111 kcal (2) G-P(sol) polarization free energy of solvation -34.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds