Wall clock time and date at job start Sat Apr 11 2020 05:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.41372 * 126.80039 * 2 1 4 4 C 1.35454 * 103.98740 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.78239 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.47053 * 89.99598 * 5 4 3 7 7 C 1.46901 * 110.99938 * 180.02562 * 6 5 4 8 8 H 1.08995 * 110.89137 * 328.88523 * 7 6 5 9 9 C 1.55132 * 110.90299 * 92.97953 * 7 6 5 10 10 N 1.47431 * 104.71955 * 155.27732 * 9 7 6 11 11 C 1.34773 * 125.64646 * 155.81909 * 10 9 7 12 12 O 1.21283 * 120.00144 * 359.71291 * 11 10 9 13 13 C 1.50705 * 119.99721 * 179.71335 * 11 10 9 14 14 S 1.81000 * 109.46942 * 180.02562 * 13 11 10 15 15 C 1.76195 * 100.00017 * 180.02562 * 14 13 11 16 16 H 1.08004 * 120.00294 * 359.97438 * 15 14 13 17 17 C 1.38802 * 120.00153 * 180.02562 * 15 14 13 18 18 N 1.31632 * 120.00093 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00020 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.47297 * 90.00077 * 19 17 15 21 21 H 1.48503 * 109.47261 * 330.00257 * 19 17 15 22 22 H 1.48500 * 109.47454 * 210.00251 * 19 17 15 23 23 C 1.47022 * 108.70107 * 335.55038 * 10 9 7 24 24 C 1.54317 * 107.27411 * 1.28941 * 23 10 9 25 25 H 1.08997 * 110.72161 * 140.73282 * 24 23 10 26 26 C 1.53004 * 110.72053 * 263.83169 * 24 23 10 27 27 O 1.34039 * 106.44304 * 0.23676 * 4 3 2 28 28 N 1.20932 * 111.56925 * 359.56928 * 27 4 3 29 29 H 1.09000 * 109.46832 * 90.00142 * 1 2 3 30 30 H 1.08999 * 109.47129 * 209.99892 * 1 2 3 31 31 H 1.08994 * 109.46838 * 330.00199 * 1 2 3 32 32 H 1.08002 * 128.01087 * 0.03288 * 3 2 1 33 33 H 1.09001 * 109.46586 * 330.00226 * 5 4 3 34 34 H 1.09000 * 109.47360 * 209.99596 * 5 4 3 35 35 H 1.00900 * 111.00563 * 303.95739 * 6 5 4 36 36 H 1.08993 * 110.49897 * 36.43293 * 9 7 6 37 37 H 1.09000 * 110.34260 * 274.03783 * 9 7 6 38 38 H 1.08997 * 109.46935 * 60.00104 * 13 11 10 39 39 H 1.09000 * 109.47082 * 299.99666 * 13 11 10 40 40 H 0.97006 * 119.99745 * 179.97438 * 18 17 15 41 41 H 1.09003 * 109.88009 * 120.71121 * 23 10 9 42 42 H 1.09001 * 109.88122 * 241.71490 * 23 10 9 43 43 H 1.08991 * 109.47553 * 58.54232 * 26 24 23 44 44 H 1.09002 * 109.47127 * 178.54861 * 26 24 23 45 45 H 1.09003 * 109.47065 * 298.54217 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6025 0.6068 -0.0006 5 6 4.9022 1.3695 -0.0014 6 7 5.3252 1.6176 1.3833 7 6 6.5915 2.3613 1.4217 8 1 7.2125 2.1161 0.5603 9 6 6.3339 3.8885 1.5118 10 7 7.5512 4.4375 2.1365 11 6 7.9950 5.7040 2.0123 12 8 7.3782 6.4991 1.3352 13 6 9.2576 6.1323 2.7148 14 16 9.5860 7.8757 2.3559 15 6 11.0725 8.1024 3.2742 16 1 11.4948 7.2784 3.8303 17 6 11.7004 9.3402 3.2838 18 7 12.8107 9.5097 3.9703 19 14 10.9698 10.7656 2.3227 20 1 10.0258 11.5153 3.1900 21 1 10.2442 10.2430 1.1371 22 1 12.0585 11.6718 1.8769 23 6 8.1975 3.3763 2.9224 24 6 7.3515 2.0974 2.7484 25 1 7.9923 1.2201 2.6610 26 6 6.3704 1.9350 3.9112 27 8 3.4538 -0.7253 -0.0062 28 7 2.2868 -1.0424 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 2.0710 2.1743 0.0005 33 1 4.7648 2.3209 -0.5153 34 1 5.6658 0.7857 -0.5155 35 1 4.6062 2.1015 1.9000 36 1 5.4629 4.0925 2.1345 37 1 6.1960 4.3089 0.5157 38 1 10.0922 5.5253 2.3642 39 1 9.1381 5.9994 3.7901 40 1 13.2497 10.3747 3.9767 41 1 9.2086 3.2050 2.5531 42 1 8.2304 3.6615 3.9739 43 1 5.7202 2.8082 3.9627 44 1 5.7666 1.0411 3.7550 45 1 6.9255 1.8399 4.8444 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700255094.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:31 Heat of formation + Delta-G solvation = 5.183724 kcal Electronic energy + Delta-G solvation = -26211.576159 eV Core-core repulsion = 22357.644028 eV Total energy + Delta-G solvation = -3853.932131 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.88467 -41.30933 -39.27520 -36.63352 -35.67476 -34.67860 -33.84895 -32.41391 -31.38705 -29.56745 -28.94911 -27.85885 -27.46492 -26.19478 -24.10737 -23.79040 -21.20190 -20.85893 -20.67298 -19.60884 -18.61644 -18.44793 -18.08120 -17.38159 -17.13683 -16.87809 -16.16518 -15.94745 -15.70848 -15.51463 -15.17869 -15.01698 -14.89271 -14.34243 -14.18109 -14.07741 -14.05359 -13.95600 -13.64008 -13.43964 -13.38035 -13.35146 -13.09645 -13.01888 -12.85882 -12.65906 -12.18193 -12.01745 -11.87614 -11.75753 -11.57856 -11.17593 -11.02805 -10.94293 -10.55459 -10.49095 -9.78404 -9.48736 -9.01595 -8.51934 -6.23373 0.45483 0.95539 1.25923 1.31028 1.44728 1.49284 1.52756 2.01332 2.15710 2.24548 2.66770 2.86249 3.08098 3.30260 3.36749 3.52917 3.62194 3.80114 3.96907 4.09983 4.12430 4.17870 4.23228 4.27251 4.35323 4.40486 4.55881 4.61753 4.62875 4.68158 4.70931 4.73731 4.80319 4.91708 4.95370 4.96521 5.11538 5.25329 5.27854 5.34189 5.53141 5.70233 5.81965 6.10852 6.22489 6.32339 6.93042 7.03412 7.32126 8.60337 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027384 B = 0.001897 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.232839 B =14755.190138 C =15401.705718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.005 3.995 3 C -0.229 4.229 4 C -0.020 4.020 5 C 0.136 3.864 6 N -0.664 5.664 7 C 0.095 3.905 8 H 0.110 0.890 9 C 0.078 3.922 10 N -0.610 5.610 11 C 0.548 3.452 12 O -0.564 6.564 13 C -0.103 4.103 14 S -0.175 6.175 15 C -0.529 4.529 16 H 0.062 0.938 17 C 0.047 3.953 18 N -0.915 5.915 19 Si 0.914 3.086 20 H -0.262 1.262 21 H -0.237 1.237 22 H -0.258 1.258 23 C 0.091 3.909 24 C -0.080 4.080 25 H 0.112 0.888 26 C -0.136 4.136 27 O 0.088 5.912 28 N -0.402 5.402 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.194 0.806 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.353 0.647 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.277 0.723 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.044 0.956 44 H 0.074 0.926 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.351 -21.897 -6.459 31.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.153 4.153 3 C -0.251 4.251 4 C -0.084 4.084 5 C 0.007 3.993 6 N -0.296 5.296 7 C -0.016 4.016 8 H 0.128 0.872 9 C -0.046 4.046 10 N -0.345 5.345 11 C 0.336 3.664 12 O -0.443 6.443 13 C -0.254 4.254 14 S 0.052 5.948 15 C -0.677 4.677 16 H 0.081 0.919 17 C -0.159 4.159 18 N -0.553 5.553 19 Si 0.736 3.264 20 H -0.187 1.187 21 H -0.161 1.161 22 H -0.183 1.183 23 C -0.031 4.031 24 C -0.099 4.099 25 H 0.130 0.870 26 C -0.194 4.194 27 O 0.024 5.976 28 N -0.109 5.109 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.119 0.881 32 H 0.211 0.789 33 H 0.104 0.896 34 H 0.128 0.872 35 H 0.173 0.827 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.063 0.937 44 H 0.093 0.907 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.001 -22.517 -7.327 32.323 hybrid contribution 0.623 1.654 0.594 1.864 sum -21.378 -20.863 -6.733 30.621 Atomic orbital electron populations 1.20309 0.84157 1.04678 1.04303 1.24197 1.00469 0.88841 1.01764 1.22822 0.90864 1.02012 1.09371 1.24647 0.98633 0.83267 1.01823 1.20522 0.89816 0.97828 0.91175 1.60523 1.05579 1.51305 1.12169 1.22758 0.91692 0.87560 0.99590 0.87196 1.23176 0.87451 0.95607 0.98400 1.48222 1.26783 1.09010 1.50459 1.19627 0.85274 0.81050 0.80467 1.90685 1.59230 1.52427 1.41943 1.23205 0.98717 0.99094 1.04367 1.84687 1.32172 1.10806 1.67153 1.22441 1.09823 1.00881 1.34538 0.91949 1.25554 0.94393 1.00599 0.95354 1.70017 1.18330 1.25924 1.41059 0.85876 0.79516 0.79892 0.81137 1.18702 1.16086 1.18270 1.22533 0.97732 0.86556 0.96284 1.22180 0.96740 0.96211 0.94778 0.86998 1.21672 0.98847 1.02138 0.96709 1.84794 1.21341 1.23909 1.67582 1.73880 0.89951 1.25577 1.21513 0.89146 0.90789 0.88069 0.78913 0.89596 0.87248 0.82675 0.90903 0.91356 0.87094 0.87356 0.91348 0.90066 0.90586 0.93695 0.90738 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.48 71.24 0.75 0.07 16 2 C 0.01 0.08 7.33 43.58 0.32 0.40 16 3 C -0.23 -2.69 11.06 22.40 0.25 -2.44 16 4 C -0.02 -0.25 7.00 25.04 0.18 -0.07 16 5 C 0.14 1.10 6.11 85.56 0.52 1.62 16 6 N -0.66 -5.95 5.32 -488.01 -2.60 -8.55 16 7 C 0.10 1.02 3.19 46.39 0.15 1.17 16 8 H 0.11 1.06 7.83 -2.39 -0.02 1.04 16 9 C 0.08 1.35 6.18 86.93 0.54 1.89 16 10 N -0.61 -14.43 3.32 -811.35 -2.70 -17.13 16 11 C 0.55 18.95 7.87 87.66 0.69 19.64 16 12 O -0.56 -24.04 16.12 -3.04 -0.05 -24.09 16 13 C -0.10 -3.90 5.35 71.24 0.38 -3.52 16 14 S -0.17 -8.81 18.55 -56.49 -1.05 -9.86 16 15 C -0.53 -30.66 10.04 67.95 0.68 -29.98 16 16 H 0.06 3.81 8.03 -2.91 -0.02 3.79 16 17 C 0.05 2.72 5.50 84.86 0.47 3.18 16 18 N -0.92 -55.37 13.97 21.65 0.30 -55.06 16 19 Si 0.91 44.68 27.74 68.60 1.90 46.58 16 20 H -0.26 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.24 -11.56 6.74 99.48 0.67 -10.89 16 22 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 23 C 0.09 1.52 6.06 86.73 0.53 2.04 16 24 C -0.08 -0.89 3.56 -9.61 -0.03 -0.92 16 25 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 26 C -0.14 -1.52 8.27 71.98 0.60 -0.92 16 27 O 0.09 1.65 11.20 71.63 0.80 2.45 16 28 N -0.40 -8.26 12.07 -49.56 -0.60 -8.86 16 29 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.10 0.48 8.14 -2.39 -0.02 0.47 16 32 H 0.19 1.22 8.06 -2.91 -0.02 1.20 16 33 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.11 0.75 8.09 -2.39 -0.02 0.73 16 35 H 0.35 3.01 7.81 -89.69 -0.70 2.31 16 36 H 0.07 1.20 7.31 -2.39 -0.02 1.18 16 37 H 0.07 1.35 8.03 -2.39 -0.02 1.33 16 38 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 39 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 40 H 0.28 15.48 8.31 -92.70 -0.77 14.71 16 41 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.08 1.28 7.85 -2.39 -0.02 1.26 16 43 H 0.04 0.57 7.42 -2.39 -0.02 0.55 16 44 H 0.07 0.81 7.65 -2.39 -0.02 0.79 16 45 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -76.86 386.88 2.28 -74.57 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 0.26 Total: 7.78 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: 6.00 Total: -7.84 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -5.59 Total: -89.59 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: 0.75 Total: -21.64 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.90 Total: 46.58 kcal Atomic # 16 Polarization: -8.81 SS G_CDS: -1.05 Total: -9.86 kcal Total: -76.86 2.28 -74.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700255094.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.754 kcal (2) G-P(sol) polarization free energy of solvation -76.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds