Wall clock time and date at job start Sat Apr 11 2020 05:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.34048 * 126.77773 * 2 1 4 4 N 1.20923 * 111.56391 * 180.29041 * 3 2 1 5 5 C 1.30170 * 111.60659 * 359.76299 * 4 3 2 6 6 C 1.35455 * 126.77820 * 179.89352 * 2 1 3 7 7 C 1.50693 * 128.00553 * 0.02562 * 6 2 1 8 8 N 1.46903 * 109.47327 * 79.70192 * 7 6 2 9 9 C 1.46894 * 111.00276 * 179.97438 * 8 7 6 10 10 H 1.08997 * 110.88550 * 38.70579 * 9 8 7 11 11 C 1.55137 * 111.19383 * 274.77330 * 9 8 7 12 12 N 1.47424 * 104.72253 * 279.19067 * 11 9 8 13 13 C 1.34771 * 125.64531 * 155.81597 * 12 11 9 14 14 O 1.21277 * 120.00536 * 359.71836 * 13 12 11 15 15 C 1.50707 * 119.99400 * 179.71630 * 13 12 11 16 16 S 1.81000 * 109.46778 * 179.97438 * 15 13 12 17 17 C 1.76195 * 100.00142 * 180.02562 * 16 15 13 18 18 H 1.08007 * 119.99977 * 0.02562 * 17 16 15 19 19 C 1.38805 * 120.00401 * 180.27589 * 17 16 15 20 20 N 1.31625 * 119.99658 * 359.72498 * 19 17 16 21 21 Si 1.86793 * 120.00244 * 179.72567 * 19 17 16 22 22 H 1.48505 * 109.47180 * 59.99828 * 21 19 17 23 23 H 1.48497 * 109.47093 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47232 * 299.99975 * 21 19 17 25 25 C 1.47021 * 108.70196 * 335.55400 * 12 11 9 26 26 C 1.54328 * 107.27190 * 1.28471 * 25 12 11 27 27 H 1.09002 * 110.72070 * 263.82671 * 26 25 12 28 28 C 1.53003 * 110.71752 * 140.73658 * 26 25 12 29 29 H 1.09005 * 109.47043 * 270.10724 * 1 2 3 30 30 H 1.08996 * 109.47472 * 30.10836 * 1 2 3 31 31 H 1.09001 * 109.47333 * 150.10848 * 1 2 3 32 32 H 1.08006 * 126.79756 * 179.97438 * 5 4 3 33 33 H 1.09004 * 109.47281 * 319.70494 * 7 6 2 34 34 H 1.08995 * 109.47400 * 199.70662 * 7 6 2 35 35 H 1.00899 * 111.00292 * 303.95952 * 8 7 6 36 36 H 1.09003 * 110.49610 * 160.34639 * 11 9 8 37 37 H 1.08996 * 110.33873 * 37.95345 * 11 9 8 38 38 H 1.08999 * 109.47297 * 60.00779 * 15 13 12 39 39 H 1.08998 * 109.47132 * 299.99638 * 15 13 12 40 40 H 0.96998 * 120.00245 * 179.97438 * 20 19 17 41 41 H 1.08992 * 109.88435 * 120.70340 * 25 12 11 42 42 H 1.09003 * 109.88070 * 241.71781 * 25 12 11 43 43 H 1.08994 * 109.47041 * 67.25926 * 28 26 25 44 44 H 1.08999 * 109.47185 * 187.25751 * 28 26 25 45 45 H 1.08996 * 109.46972 * 307.25297 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3095 1.0737 0.0000 4 7 3.4763 0.7564 -0.0057 5 6 3.6213 -0.5372 -0.0052 6 6 2.3179 -1.0849 0.0020 7 6 1.9224 -2.5390 0.0042 8 7 1.5554 -2.9488 -1.3580 9 6 1.1639 -4.3641 -1.3946 10 1 0.5869 -4.6307 -0.5091 11 6 2.4030 -5.2851 -1.5469 12 7 2.7173 -5.2550 -2.9870 13 6 3.9238 -5.5054 -3.5329 14 8 4.8666 -5.7794 -2.8209 15 6 4.1012 -5.4450 -5.0283 16 16 5.8204 -5.8257 -5.4476 17 6 5.7453 -5.6865 -7.2024 18 1 4.8133 -5.4307 -7.6845 19 6 6.8828 -5.9108 -7.9657 20 7 8.0187 -6.2220 -7.3782 21 14 6.8014 -5.7707 -9.8266 22 1 6.3828 -4.3962 -10.2018 23 1 8.1396 -6.0560 -10.4035 24 1 5.8167 -6.7493 -10.3541 25 6 1.4952 -4.9129 -3.7292 26 6 0.3756 -4.6898 -2.6907 27 1 -0.2185 -5.5948 -2.5637 28 6 -0.5138 -3.5134 -3.0979 29 1 -0.3633 0.0019 1.0277 30 1 -0.3634 0.8890 -0.5155 31 1 -0.3634 -0.8909 -0.5121 32 1 4.5528 -1.0839 -0.0099 33 1 1.0704 -2.6829 0.6687 34 1 2.7604 -3.1430 0.3520 35 1 0.8233 -2.3610 -1.7276 36 1 2.1645 -6.3009 -1.2318 37 1 3.2393 -4.8938 -0.9678 38 1 3.8541 -4.4446 -5.3834 39 1 3.4418 -6.1721 -5.5021 40 1 8.8136 -6.3791 -7.9116 41 1 1.6540 -4.0010 -4.3047 42 1 1.2262 -5.7308 -4.3976 43 1 -1.0676 -3.7720 -4.0004 44 1 -1.2144 -3.2918 -2.2928 45 1 0.1068 -2.6383 -3.2905 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700255370.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:37 Heat of formation + Delta-G solvation = 32.953526 kcal Electronic energy + Delta-G solvation = -26976.853281 eV Core-core repulsion = 23124.125338 eV Total energy + Delta-G solvation = -3852.727943 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.15283 -40.12136 -38.00406 -36.05824 -33.74498 -33.37828 -32.40687 -32.36194 -30.23841 -28.64409 -27.70913 -26.49124 -25.82040 -25.40341 -22.94006 -22.48201 -20.91315 -20.07599 -19.27005 -17.85134 -17.72118 -17.43030 -16.84692 -16.44643 -16.06749 -15.26334 -14.86581 -14.78038 -14.73581 -14.42244 -14.05136 -13.76855 -13.70900 -13.58716 -13.42385 -13.26068 -12.90272 -12.82773 -12.60716 -12.43720 -12.32898 -12.05763 -11.71806 -11.49452 -11.31782 -11.23973 -11.01264 -11.00482 -10.96800 -10.73889 -10.50417 -9.78708 -9.51573 -9.32496 -9.02433 -8.79411 -8.34632 -8.18683 -6.45520 -6.17864 -3.87978 1.17134 2.01644 2.81264 2.99974 3.17410 3.25800 3.28753 3.31882 3.68341 3.79133 4.04654 4.10065 4.24120 4.26020 4.33995 4.46894 4.55991 4.70120 4.89913 4.93892 5.04237 5.04704 5.08230 5.13520 5.16984 5.21335 5.23580 5.32016 5.38611 5.44836 5.51956 5.57300 5.61494 5.65949 5.75627 5.82616 5.85905 5.89956 6.02298 6.20687 6.47130 6.65955 6.97597 7.62629 7.78707 8.04322 8.38640 8.66658 9.27103 10.89589 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012833 B = 0.002578 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.290996 B =10859.833175 C =11671.047943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.033 4.033 3 O 0.096 5.904 4 N -0.366 5.366 5 C 0.013 3.987 6 C -0.195 4.195 7 C 0.137 3.863 8 N -0.673 5.673 9 C 0.074 3.926 10 H 0.066 0.934 11 C 0.119 3.881 12 N -0.615 5.615 13 C 0.550 3.450 14 O -0.519 6.519 15 C -0.145 4.145 16 S -0.061 6.061 17 C -0.534 4.534 18 H 0.071 0.929 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.114 3.886 26 C -0.102 4.102 27 H 0.091 0.909 28 C -0.150 4.150 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.192 0.808 33 H 0.044 0.956 34 H 0.089 0.911 35 H 0.345 0.655 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.269 0.731 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.703 8.723 16.018 29.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.098 4.098 3 O 0.031 5.969 4 N -0.070 5.070 5 C -0.166 4.166 6 C -0.199 4.199 7 C 0.008 3.992 8 N -0.308 5.308 9 C -0.036 4.036 10 H 0.084 0.916 11 C -0.005 4.005 12 N -0.352 5.352 13 C 0.339 3.661 14 O -0.394 6.394 15 C -0.296 4.296 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.200 1.200 25 C -0.010 4.010 26 C -0.121 4.121 27 H 0.109 0.891 28 C -0.208 4.208 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.209 0.791 33 H 0.062 0.938 34 H 0.107 0.893 35 H 0.167 0.833 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.512 9.174 16.808 28.061 hybrid contribution -2.171 -0.341 -1.704 2.781 sum -22.684 8.833 15.105 28.648 Atomic orbital electron populations 1.20313 0.84287 1.04446 1.04005 1.24279 0.96107 0.86165 1.03221 1.84816 1.11509 1.32993 1.67579 1.73905 0.96817 1.16987 1.19268 1.24983 1.00005 0.89959 1.01697 1.20955 0.92459 0.96732 1.09748 1.20132 1.00505 0.88819 0.89716 1.60368 1.46699 1.02692 1.21054 1.22757 0.95164 0.88526 0.97163 0.91611 1.22196 0.97105 0.97763 0.83406 1.48268 1.08936 1.71229 1.06735 1.19938 0.80464 0.75640 0.90067 1.90696 1.38625 1.47041 1.62997 1.23490 1.07703 1.04837 0.93553 1.85378 1.00545 1.91098 1.06429 1.22821 0.98852 1.55172 0.91427 0.91043 1.24986 0.94526 0.94586 0.99482 1.70008 1.00079 1.44157 1.36091 0.86233 0.77456 0.78755 0.83105 1.19935 1.20823 1.19964 1.21962 0.83914 1.00771 0.94347 1.22349 0.95706 0.99672 0.94369 0.89079 1.21796 0.99167 0.97944 1.01870 0.89420 0.89551 0.89665 0.79132 0.93759 0.89262 0.83265 0.91543 0.90195 0.89409 0.89520 0.92161 0.91146 0.91644 0.91533 0.92383 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.27 10.30 36.00 0.37 0.10 16 2 C -0.03 -0.27 7.49 -35.31 -0.26 -0.53 16 3 O 0.10 1.04 11.20 17.15 0.19 1.23 16 4 N -0.37 -4.63 12.07 30.35 0.37 -4.26 16 5 C 0.01 0.14 12.16 -17.06 -0.21 -0.07 16 6 C -0.19 -1.77 5.84 -104.43 -0.61 -2.38 16 7 C 0.14 1.02 5.87 -4.98 -0.03 1.00 16 8 N -0.67 -5.48 6.26 -105.60 -0.66 -6.14 16 9 C 0.07 0.57 3.12 -65.45 -0.20 0.36 16 10 H 0.07 0.37 7.94 -51.93 -0.41 -0.04 16 11 C 0.12 1.38 6.57 -2.41 -0.02 1.36 16 12 N -0.61 -8.96 3.32 -170.38 -0.57 -9.52 16 13 C 0.55 10.98 7.87 -10.98 -0.09 10.89 16 14 O -0.52 -12.38 16.12 5.56 0.09 -12.29 16 15 C -0.15 -3.09 5.35 36.01 0.19 -2.90 16 16 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 17 C -0.53 -15.52 9.50 30.94 0.29 -15.23 16 18 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 19 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 20 N -0.87 -26.60 13.22 55.49 0.73 -25.86 16 21 Si 0.92 21.71 29.55 -169.99 -5.02 16.69 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 C 0.11 1.22 6.07 -3.06 -0.02 1.20 16 26 C -0.10 -0.71 3.45 -88.78 -0.31 -1.02 16 27 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 28 C -0.15 -0.77 8.18 37.16 0.30 -0.47 16 29 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.08 0.21 7.48 -51.93 -0.39 -0.18 16 32 H 0.19 1.93 8.06 -52.48 -0.42 1.51 16 33 H 0.04 0.24 8.10 -51.93 -0.42 -0.18 16 34 H 0.09 0.74 7.56 -51.93 -0.39 0.35 16 35 H 0.34 2.32 5.32 -39.29 -0.21 2.11 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 1.07 7.43 -51.93 -0.39 0.68 16 38 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 39 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 40 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 41 H 0.07 0.79 7.75 -51.93 -0.40 0.39 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 45 H 0.07 0.41 6.57 -51.93 -0.34 0.07 16 LS Contribution 386.48 15.07 5.82 5.82 Total: -1.00 -37.06 386.48 -8.66 -45.72 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -6.72 Total: -1.83 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -0.68 Total: -5.63 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: -0.13 Total: -45.79 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.28 Total: -11.06 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.06 -8.66 -45.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700255370.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.669 kcal (2) G-P(sol) polarization free energy of solvation -37.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds