Wall clock time and date at job start Sat Apr 11 2020 05:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.34048 * 126.77773 * 2 1 4 4 N 1.20923 * 111.56391 * 180.29041 * 3 2 1 5 5 C 1.30170 * 111.60659 * 359.76299 * 4 3 2 6 6 C 1.35455 * 126.77820 * 179.89352 * 2 1 3 7 7 C 1.50693 * 128.00553 * 0.02562 * 6 2 1 8 8 N 1.46903 * 109.47327 * 79.70192 * 7 6 2 9 9 C 1.46894 * 111.00276 * 179.97438 * 8 7 6 10 10 H 1.08997 * 110.88550 * 38.70579 * 9 8 7 11 11 C 1.55137 * 111.19383 * 274.77330 * 9 8 7 12 12 N 1.47424 * 104.72253 * 279.19067 * 11 9 8 13 13 C 1.34771 * 125.64531 * 155.81597 * 12 11 9 14 14 O 1.21277 * 120.00536 * 359.71836 * 13 12 11 15 15 C 1.50707 * 119.99400 * 179.71630 * 13 12 11 16 16 S 1.81000 * 109.46778 * 179.97438 * 15 13 12 17 17 C 1.76195 * 100.00142 * 180.02562 * 16 15 13 18 18 H 1.08007 * 119.99977 * 0.02562 * 17 16 15 19 19 C 1.38805 * 120.00401 * 180.27589 * 17 16 15 20 20 N 1.31625 * 119.99658 * 359.72498 * 19 17 16 21 21 Si 1.86793 * 120.00244 * 179.72567 * 19 17 16 22 22 H 1.48505 * 109.47180 * 59.99828 * 21 19 17 23 23 H 1.48497 * 109.47093 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47232 * 299.99975 * 21 19 17 25 25 C 1.47021 * 108.70196 * 335.55400 * 12 11 9 26 26 C 1.54328 * 107.27190 * 1.28471 * 25 12 11 27 27 H 1.09002 * 110.72070 * 263.82671 * 26 25 12 28 28 C 1.53003 * 110.71752 * 140.73658 * 26 25 12 29 29 H 1.09005 * 109.47043 * 270.10724 * 1 2 3 30 30 H 1.08996 * 109.47472 * 30.10836 * 1 2 3 31 31 H 1.09001 * 109.47333 * 150.10848 * 1 2 3 32 32 H 1.08006 * 126.79756 * 179.97438 * 5 4 3 33 33 H 1.09004 * 109.47281 * 319.70494 * 7 6 2 34 34 H 1.08995 * 109.47400 * 199.70662 * 7 6 2 35 35 H 1.00899 * 111.00292 * 303.95952 * 8 7 6 36 36 H 1.09003 * 110.49610 * 160.34639 * 11 9 8 37 37 H 1.08996 * 110.33873 * 37.95345 * 11 9 8 38 38 H 1.08999 * 109.47297 * 60.00779 * 15 13 12 39 39 H 1.08998 * 109.47132 * 299.99638 * 15 13 12 40 40 H 0.96998 * 120.00245 * 179.97438 * 20 19 17 41 41 H 1.08992 * 109.88435 * 120.70340 * 25 12 11 42 42 H 1.09003 * 109.88070 * 241.71781 * 25 12 11 43 43 H 1.08994 * 109.47041 * 67.25926 * 28 26 25 44 44 H 1.08999 * 109.47185 * 187.25751 * 28 26 25 45 45 H 1.08996 * 109.46972 * 307.25297 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3095 1.0737 0.0000 4 7 3.4763 0.7564 -0.0057 5 6 3.6213 -0.5372 -0.0052 6 6 2.3179 -1.0849 0.0020 7 6 1.9224 -2.5390 0.0042 8 7 1.5554 -2.9488 -1.3580 9 6 1.1639 -4.3641 -1.3946 10 1 0.5869 -4.6307 -0.5091 11 6 2.4030 -5.2851 -1.5469 12 7 2.7173 -5.2550 -2.9870 13 6 3.9238 -5.5054 -3.5329 14 8 4.8666 -5.7794 -2.8209 15 6 4.1012 -5.4450 -5.0283 16 16 5.8204 -5.8257 -5.4476 17 6 5.7453 -5.6865 -7.2024 18 1 4.8133 -5.4307 -7.6845 19 6 6.8828 -5.9108 -7.9657 20 7 8.0187 -6.2220 -7.3782 21 14 6.8014 -5.7707 -9.8266 22 1 6.3828 -4.3962 -10.2018 23 1 8.1396 -6.0560 -10.4035 24 1 5.8167 -6.7493 -10.3541 25 6 1.4952 -4.9129 -3.7292 26 6 0.3756 -4.6898 -2.6907 27 1 -0.2185 -5.5948 -2.5637 28 6 -0.5138 -3.5134 -3.0979 29 1 -0.3633 0.0019 1.0277 30 1 -0.3634 0.8890 -0.5155 31 1 -0.3634 -0.8909 -0.5121 32 1 4.5528 -1.0839 -0.0099 33 1 1.0704 -2.6829 0.6687 34 1 2.7604 -3.1430 0.3520 35 1 0.8233 -2.3610 -1.7276 36 1 2.1645 -6.3009 -1.2318 37 1 3.2393 -4.8938 -0.9678 38 1 3.8541 -4.4446 -5.3834 39 1 3.4418 -6.1721 -5.5021 40 1 8.8136 -6.3791 -7.9116 41 1 1.6540 -4.0010 -4.3047 42 1 1.2262 -5.7308 -4.3976 43 1 -1.0676 -3.7720 -4.0004 44 1 -1.2144 -3.2918 -2.2928 45 1 0.1068 -2.6383 -3.2905 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700255370.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:37 Heat of formation + Delta-G solvation = 6.539914 kcal Electronic energy + Delta-G solvation = -26977.998661 eV Core-core repulsion = 23124.125338 eV Total energy + Delta-G solvation = -3853.873323 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.94566 -41.17783 -39.22306 -36.86086 -34.67919 -34.59593 -34.07034 -33.04654 -31.55614 -29.46785 -28.57640 -27.67124 -27.23993 -26.50095 -23.73363 -23.35245 -21.62239 -20.78273 -20.60790 -19.59607 -18.65724 -18.22059 -17.99256 -17.56997 -16.89790 -16.79872 -16.56318 -16.13959 -15.64685 -15.47812 -15.20431 -14.77402 -14.58980 -14.24128 -14.22580 -13.96022 -13.94074 -13.78445 -13.50528 -13.31388 -13.19429 -13.13689 -12.99341 -12.87336 -12.81467 -12.62929 -12.17571 -12.00932 -11.79219 -11.75491 -11.56785 -11.29454 -11.14252 -10.91860 -10.30501 -10.16549 -9.63745 -9.28665 -8.69716 -8.35809 -6.14869 0.50814 1.22135 1.24011 1.42946 1.44393 1.54619 1.61385 2.16225 2.23150 2.26759 2.97935 3.18535 3.22379 3.37704 3.42455 3.62686 3.69233 3.83122 3.92216 4.00340 4.16370 4.22977 4.38162 4.42410 4.46760 4.54173 4.59705 4.63318 4.67663 4.72207 4.74059 4.80762 4.82128 4.83668 4.94403 5.01728 5.09921 5.23747 5.27776 5.39217 5.43218 5.48921 6.04926 6.17926 6.44169 6.51609 7.04657 7.17462 7.29887 8.73456 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012833 B = 0.002578 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.290996 B =10859.833175 C =11671.047943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.020 4.020 3 O 0.085 5.915 4 N -0.402 5.402 5 C -0.011 4.011 6 C -0.205 4.205 7 C 0.144 3.856 8 N -0.693 5.693 9 C 0.089 3.911 10 H 0.103 0.897 11 C 0.108 3.892 12 N -0.604 5.604 13 C 0.544 3.456 14 O -0.572 6.572 15 C -0.117 4.117 16 S -0.152 6.152 17 C -0.547 4.547 18 H 0.082 0.918 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 1.000 3.000 22 H -0.262 1.262 23 H -0.278 1.278 24 H -0.260 1.260 25 C 0.100 3.900 26 C -0.088 4.088 27 H 0.113 0.887 28 C -0.146 4.146 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.187 0.813 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.356 0.644 36 H 0.079 0.921 37 H 0.054 0.946 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.272 0.728 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.085 0.915 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.385 9.038 15.564 33.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.084 4.084 3 O 0.021 5.979 4 N -0.108 5.108 5 C -0.189 4.189 6 C -0.210 4.210 7 C 0.015 3.985 8 N -0.330 5.330 9 C -0.021 4.021 10 H 0.120 0.880 11 C -0.015 4.015 12 N -0.338 5.338 13 C 0.332 3.668 14 O -0.452 6.452 15 C -0.268 4.268 16 S 0.075 5.925 17 C -0.695 4.695 18 H 0.100 0.900 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.187 1.187 23 H -0.203 1.203 24 H -0.184 1.184 25 C -0.023 4.023 26 C -0.107 4.107 27 H 0.132 0.868 28 C -0.204 4.204 29 H 0.126 0.874 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.204 0.796 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.181 0.819 36 H 0.098 0.902 37 H 0.073 0.927 38 H 0.116 0.884 39 H 0.122 0.878 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.103 0.897 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -25.280 9.512 16.370 31.584 hybrid contribution -0.833 -0.414 -1.464 1.735 sum -26.113 9.098 14.906 31.415 Atomic orbital electron populations 1.20609 0.80650 1.06029 1.05759 1.25092 0.97794 0.84857 1.00688 1.84760 1.11326 1.34152 1.67652 1.73889 0.98049 1.17742 1.21110 1.25228 1.01332 0.90138 1.02178 1.21152 0.91433 0.98009 1.10391 1.20106 1.01117 0.87252 0.90017 1.60222 1.47749 1.03254 1.21793 1.22695 0.93032 0.87382 0.99039 0.87951 1.22536 0.98355 0.99720 0.80924 1.48233 1.08260 1.68475 1.08819 1.19683 0.81770 0.76132 0.89219 1.90669 1.40850 1.50022 1.63630 1.23272 1.02647 1.05645 0.95264 1.85565 1.07419 1.91741 1.07751 1.23152 0.99602 1.55391 0.91316 0.90026 1.26166 0.93830 0.93690 1.05509 1.70182 1.01022 1.45203 1.38413 0.84983 0.77918 0.79442 0.75520 1.18680 1.20271 1.18433 1.22359 0.83496 1.00754 0.95649 1.22376 0.94497 1.01624 0.92179 0.86845 1.21789 0.99021 0.96417 1.03157 0.87375 0.88447 0.87542 0.79576 0.90473 0.90864 0.81942 0.90248 0.92702 0.88354 0.87753 0.91944 0.91669 0.90886 0.91025 0.89656 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.25 10.30 71.23 0.73 0.48 16 2 C -0.02 -0.28 7.49 25.04 0.19 -0.09 16 3 O 0.08 1.83 11.20 71.56 0.80 2.63 16 4 N -0.40 -10.62 12.07 -59.26 -0.72 -11.34 16 5 C -0.01 -0.25 12.16 85.71 1.04 0.79 16 6 C -0.21 -3.54 5.84 -19.74 -0.12 -3.65 16 7 C 0.14 1.83 5.87 85.55 0.50 2.34 16 8 N -0.69 -9.38 6.26 -488.02 -3.05 -12.43 16 9 C 0.09 1.03 3.12 46.39 0.14 1.17 16 10 H 0.10 0.57 7.94 -2.39 -0.02 0.55 16 11 C 0.11 2.36 6.57 86.94 0.57 2.93 16 12 N -0.60 -17.18 3.32 -811.34 -2.70 -19.88 16 13 C 0.54 22.27 7.87 87.66 0.69 22.96 16 14 O -0.57 -28.79 16.12 -3.02 -0.05 -28.84 16 15 C -0.12 -5.07 5.35 71.24 0.38 -4.69 16 16 S -0.15 -8.86 20.57 -56.49 -1.16 -10.02 16 17 C -0.55 -32.26 9.50 67.96 0.65 -31.61 16 18 H 0.08 4.47 7.80 -2.91 -0.02 4.44 16 19 C 0.01 0.74 5.49 84.86 0.47 1.21 16 20 N -0.91 -57.41 13.22 21.65 0.29 -57.12 16 21 Si 1.00 44.48 29.55 68.60 2.03 46.50 16 22 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 23 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 24 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 25 C 0.10 1.91 6.07 86.73 0.53 2.43 16 26 C -0.09 -0.85 3.45 -9.60 -0.03 -0.88 16 27 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 28 C -0.15 -0.81 8.18 71.98 0.59 -0.22 16 29 H 0.11 0.02 8.14 -2.38 -0.02 0.00 16 30 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.11 -0.04 7.48 -2.39 -0.02 -0.06 16 32 H 0.19 4.28 8.06 -2.91 -0.02 4.25 16 33 H 0.08 0.49 8.10 -2.39 -0.02 0.48 16 34 H 0.07 1.18 7.56 -2.39 -0.02 1.16 16 35 H 0.36 3.42 5.32 -89.69 -0.48 2.95 16 36 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.05 1.50 7.43 -2.39 -0.02 1.48 16 38 H 0.10 4.00 8.14 -2.40 -0.02 3.98 16 39 H 0.10 4.09 8.14 -2.40 -0.02 4.07 16 40 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 41 H 0.06 1.34 7.75 -2.39 -0.02 1.33 16 42 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.07 0.37 8.14 -2.39 -0.02 0.36 16 44 H 0.08 0.08 8.14 -2.39 -0.02 0.06 16 45 H 0.06 0.47 6.57 -2.39 -0.02 0.46 16 Total: -1.00 -87.20 386.48 2.29 -84.91 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.53 Total: 12.43 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: 6.33 Total: -6.84 kcal Atomic # 7 Polarization: -94.59 SS G_CDS: -6.18 Total: -100.77 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: 0.75 Total: -26.21 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.16 Total: -10.02 kcal Total: -87.20 2.29 -84.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700255370.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.445 kcal (2) G-P(sol) polarization free energy of solvation -87.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds