Wall clock time and date at job start Sat Apr 11 2020 05:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35458 * 128.00401 * 2 1 4 4 O 1.34040 * 106.44344 * 180.23635 * 3 2 1 5 5 N 1.20921 * 111.56976 * 359.75350 * 4 3 2 6 6 C 1.30176 * 111.60205 * 0.02562 * 5 4 3 7 7 C 1.50706 * 126.79884 * 179.97438 * 6 5 4 8 8 N 1.46893 * 109.47176 * 90.02241 * 7 6 5 9 9 C 1.46903 * 110.99924 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.47090 * 179.97438 * 9 8 7 11 11 C 1.53778 * 113.61761 * 274.13666 * 10 9 8 12 12 C 1.53956 * 87.02275 * 220.04848 * 11 10 9 13 13 N 1.46498 * 113.53425 * 270.81352 * 12 11 10 14 14 C 1.34776 * 119.99748 * 252.48675 * 13 12 11 15 15 O 1.21287 * 120.00072 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00112 * 180.02562 * 14 13 12 17 17 S 1.80997 * 109.47172 * 180.02562 * 16 14 13 18 18 C 1.76195 * 100.00332 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99723 * 359.97438 * 18 17 16 20 20 C 1.38798 * 120.00623 * 179.97438 * 18 17 16 21 21 N 1.31637 * 119.99504 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00254 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46898 * 60.00609 * 22 20 18 24 24 H 1.48502 * 109.47095 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47404 * 300.00362 * 22 20 18 26 26 C 1.53783 * 113.61307 * 176.52586 * 10 9 8 27 27 H 1.09007 * 109.47128 * 270.15593 * 1 2 3 28 28 H 1.09000 * 109.47782 * 30.15644 * 1 2 3 29 29 H 1.08999 * 109.47170 * 150.16177 * 1 2 3 30 30 H 1.07995 * 126.77576 * 359.97396 * 3 2 1 31 31 H 1.09001 * 109.46953 * 210.01701 * 7 6 5 32 32 H 1.09000 * 109.47318 * 330.01299 * 7 6 5 33 33 H 1.00904 * 110.99720 * 303.94906 * 8 7 6 34 34 H 1.08993 * 109.46933 * 299.99334 * 9 8 7 35 35 H 1.09003 * 109.46864 * 60.00013 * 9 8 7 36 36 H 1.09002 * 112.85168 * 45.33511 * 10 9 8 37 37 H 1.08999 * 113.61336 * 334.56972 * 11 10 9 38 38 H 1.09002 * 113.61517 * 105.46896 * 11 10 9 39 39 H 1.08997 * 113.74276 * 139.93704 * 12 11 10 40 40 H 0.96993 * 120.00141 * 72.49249 * 13 12 11 41 41 H 1.08999 * 109.47190 * 300.00189 * 16 14 13 42 42 H 1.08997 * 109.47222 * 60.00116 * 16 14 13 43 43 H 0.97003 * 119.99267 * 180.02562 * 21 20 18 44 44 H 1.08994 * 113.61522 * 254.52990 * 26 10 9 45 45 H 1.09001 * 113.61075 * 25.43912 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3410 1.0674 0.0000 4 8 3.5876 0.5748 -0.0053 5 7 3.5878 -0.6344 -0.0035 6 6 2.3776 -1.1139 0.0025 7 6 1.9828 -2.5683 0.0058 8 7 1.8603 -3.0393 1.3918 9 6 1.4752 -4.4563 1.4342 10 6 1.3584 -4.9097 2.8908 11 6 2.6929 -5.3677 3.5023 12 6 1.9000 -6.4961 4.1866 13 7 1.3687 -6.1243 5.5002 14 6 1.9173 -6.6379 6.6190 15 8 2.8512 -7.4075 6.5382 16 6 1.3705 -6.2559 7.9703 17 16 2.3117 -7.1031 9.2635 18 6 1.4835 -6.4933 10.6941 19 1 0.6584 -5.8045 10.5879 20 6 1.8912 -6.8981 11.9576 21 7 2.8971 -7.7373 12.0870 22 14 1.0135 -6.2510 13.4743 23 1 -0.4195 -6.6367 13.4192 24 1 1.6361 -6.8306 14.6915 25 1 1.1265 -4.7710 13.5179 26 6 0.8758 -6.3614 3.0472 27 1 -0.3634 0.0028 1.0277 28 1 -0.3635 0.8885 -0.5162 29 1 -0.3633 -0.8914 -0.5113 30 1 2.0575 2.1094 -0.0004 31 1 1.0265 -2.6863 -0.5039 32 1 2.7442 -3.1527 -0.5107 33 1 2.7149 -2.8810 1.9043 34 1 0.5153 -4.5870 0.9346 35 1 2.2329 -5.0540 0.9276 36 1 0.8140 -4.1992 3.5129 37 1 3.4117 -5.7244 2.7646 38 1 3.1227 -4.6493 4.2005 39 1 2.4194 -7.4543 4.1957 40 1 0.6220 -5.5086 5.5648 41 1 1.4568 -5.1778 8.1057 42 1 0.3221 -6.5472 8.0335 43 1 3.1818 -8.0204 12.9701 44 1 -0.1592 -6.4442 3.3786 45 1 1.0969 -6.9903 2.1849 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700367990.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:42 Heat of formation + Delta-G solvation = 38.797652 kcal Electronic energy + Delta-G solvation = -25373.142908 eV Core-core repulsion = 21520.668386 eV Total energy + Delta-G solvation = -3852.474522 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.32270 -40.19169 -38.30900 -36.82858 -34.78578 -33.12360 -32.43890 -32.40867 -29.53200 -28.62302 -28.11692 -25.97814 -25.51768 -25.15811 -22.36831 -22.06385 -21.52042 -20.78569 -19.25285 -17.99526 -17.93922 -17.80857 -16.59311 -16.21396 -15.96971 -15.51835 -15.37969 -14.89135 -14.79732 -14.63104 -14.29159 -13.84493 -13.72222 -13.60886 -13.45807 -13.13812 -13.12151 -12.84778 -12.67329 -12.53103 -12.41787 -12.17526 -11.70342 -11.49028 -11.15408 -11.03752 -11.03223 -10.76348 -10.69792 -10.47122 -10.24946 -9.81146 -9.75486 -9.40220 -9.05498 -8.93464 -8.85744 -8.23329 -6.49265 -6.20731 -3.91379 1.10095 1.74774 2.87389 3.02426 3.07258 3.24163 3.28046 3.31517 3.56543 3.70688 3.91211 4.06941 4.21280 4.30084 4.41723 4.45931 4.62171 4.69541 4.73887 4.87405 5.02354 5.07097 5.14189 5.14525 5.15927 5.22850 5.27366 5.36117 5.37268 5.41030 5.49416 5.53957 5.59086 5.75332 5.84115 5.87890 5.88832 5.92679 6.10938 6.15034 6.48313 6.72340 6.85688 7.60036 7.72555 7.86446 8.35816 8.62278 9.24368 10.86620 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015299 B = 0.001696 C = 0.001604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.799950 B =16504.376200 C =17456.280257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.184 4.184 3 C -0.069 4.069 4 O 0.102 5.898 5 N -0.360 5.360 6 C 0.019 3.981 7 C 0.138 3.862 8 N -0.682 5.682 9 C 0.070 3.930 10 C -0.108 4.108 11 C -0.153 4.153 12 C 0.126 3.874 13 N -0.721 5.721 14 C 0.534 3.466 15 O -0.517 6.517 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C -0.139 4.139 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.216 0.784 31 H 0.094 0.906 32 H 0.048 0.952 33 H 0.347 0.653 34 H 0.075 0.925 35 H 0.035 0.965 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.398 0.602 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.269 0.731 44 H 0.075 0.925 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.329 15.165 -28.999 33.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.188 4.188 3 C -0.150 4.150 4 O 0.035 5.965 5 N -0.064 5.064 6 C -0.140 4.140 7 C 0.009 3.991 8 N -0.314 5.314 9 C -0.059 4.059 10 C -0.127 4.127 11 C -0.192 4.192 12 C 0.019 3.981 13 N -0.374 5.374 14 C 0.321 3.679 15 O -0.391 6.391 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.178 4.178 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.232 0.768 31 H 0.112 0.888 32 H 0.066 0.934 33 H 0.165 0.835 34 H 0.094 0.906 35 H 0.053 0.947 36 H 0.117 0.883 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.120 0.880 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.059 13.421 -28.940 32.299 hybrid contribution -1.978 1.537 0.826 2.638 sum -7.037 14.958 -28.114 32.613 Atomic orbital electron populations 1.20081 0.87217 1.02833 1.03066 1.21312 0.98806 0.91377 1.07349 1.25796 0.83107 1.01244 1.04839 1.84822 1.29181 1.15403 1.67112 1.73866 1.22441 0.91521 1.18552 1.23366 0.88522 0.98379 1.03752 1.20141 1.01191 0.86591 0.91201 1.60462 1.40172 1.18963 1.11836 1.21986 1.00430 0.86789 0.96653 1.22627 0.98030 0.96396 0.95604 1.23574 0.96425 0.99134 1.00079 1.21708 0.95310 0.98936 0.82131 1.45697 1.37235 1.49729 1.04741 1.20334 0.82577 0.79758 0.85276 1.90700 1.27414 1.34067 1.86870 1.23532 1.05024 1.05408 0.96451 1.85397 1.43650 1.59693 0.94567 1.22828 1.20670 1.32829 0.92112 0.90973 1.24997 0.95136 0.94819 0.98654 1.70015 1.25224 1.30809 1.24236 0.86220 0.79494 0.79093 0.80667 1.19937 1.20814 1.19942 1.23331 0.99709 0.96178 0.98609 0.90421 0.91247 0.91048 0.76795 0.88798 0.93398 0.83497 0.90643 0.94718 0.88280 0.89630 0.90858 0.88049 0.76762 0.89209 0.89190 0.92135 0.90638 0.88956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.37 36.00 0.37 0.04 16 2 C -0.18 -1.26 6.32 -104.42 -0.66 -1.92 16 3 C -0.07 -0.40 12.26 29.74 0.36 -0.04 16 4 O 0.10 0.90 11.20 17.18 0.19 1.09 16 5 N -0.36 -3.74 12.07 33.42 0.40 -3.34 16 6 C 0.02 0.17 6.84 -82.10 -0.56 -0.40 16 7 C 0.14 1.00 6.19 -4.98 -0.03 0.97 16 8 N -0.68 -5.25 6.49 -115.06 -0.75 -6.00 16 9 C 0.07 0.47 5.51 -3.82 -0.02 0.45 16 10 C -0.11 -0.83 3.77 -89.81 -0.34 -1.17 16 11 C -0.15 -1.51 7.44 -25.83 -0.19 -1.70 16 12 C 0.13 1.44 4.33 -67.02 -0.29 1.15 16 13 N -0.72 -9.57 5.26 -52.92 -0.28 -9.85 16 14 C 0.53 10.00 7.85 -10.99 -0.09 9.91 16 15 O -0.52 -11.82 15.46 5.55 0.09 -11.74 16 16 C -0.15 -3.11 6.16 36.00 0.22 -2.89 16 17 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 18 C -0.54 -15.35 9.50 30.94 0.29 -15.05 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 22 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 C -0.14 -1.10 7.39 -25.91 -0.19 -1.29 16 27 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.07 0.29 7.65 -51.93 -0.40 -0.11 16 30 H 0.22 0.34 8.06 -52.49 -0.42 -0.08 16 31 H 0.09 0.54 7.65 -51.93 -0.40 0.14 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.35 3.05 8.72 -39.29 -0.34 2.70 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.03 0.23 7.87 -51.93 -0.41 -0.18 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.09 0.78 7.92 -51.93 -0.41 0.37 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.10 1.38 7.46 -51.93 -0.39 1.00 16 40 H 0.40 4.18 8.70 -40.82 -0.36 3.82 16 41 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 42 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 43 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.09 0.62 8.10 -51.93 -0.42 0.20 16 LS Contribution 396.11 15.07 5.97 5.97 Total: -1.00 -35.72 396.11 -8.98 -44.70 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -6.89 Total: 2.03 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -1.21 Total: -9.93 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 0.11 Total: -44.74 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.28 Total: -10.64 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.72 -8.98 -44.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700367990.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.498 kcal (2) G-P(sol) polarization free energy of solvation -35.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds