Wall clock time and date at job start Sat Apr 11 2020 05:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.29030 * 124.91745 * 2 1 4 4 C 1.31781 * 117.12500 * 179.97438 * 3 2 1 5 5 C 1.50700 * 122.75014 * 179.97438 * 4 3 2 6 6 C 1.33643 * 114.49956 * 0.02562 * 4 3 2 7 7 C 1.50699 * 126.03436 * 179.97438 * 6 4 3 8 8 C 1.50695 * 109.47463 * 89.99767 * 7 6 4 9 9 O 1.21287 * 120.00121 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00497 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00129 * 174.79793 * 10 8 7 12 12 C 1.52999 * 112.94640 * 295.31151 * 11 10 8 13 13 C 1.53003 * 109.47299 * 304.22376 * 12 11 10 14 14 O 1.42897 * 109.47189 * 178.31965 * 13 12 11 15 15 C 1.53938 * 113.73697 * 163.72009 * 11 10 8 16 16 N 1.47810 * 86.03631 * 222.08511 * 15 11 10 17 17 C 1.36939 * 134.45855 * 204.64504 * 16 15 11 18 18 H 1.08008 * 119.99947 * 179.86604 * 17 16 15 19 19 C 1.38806 * 120.00347 * 359.86761 * 17 16 15 20 20 N 1.31627 * 119.99574 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00642 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47006 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47503 * 119.99545 * 21 19 17 24 24 H 1.48497 * 109.47217 * 240.00414 * 21 19 17 25 25 C 1.47585 * 91.04860 * 24.55091 * 16 15 11 26 26 S 1.70974 * 124.91608 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.47237 * 90.02682 * 1 2 3 28 28 H 1.09003 * 109.47328 * 210.02433 * 1 2 3 29 29 H 1.08999 * 109.47656 * 330.02526 * 1 2 3 30 30 H 1.09008 * 109.46656 * 90.02973 * 5 4 3 31 31 H 1.08996 * 109.47276 * 210.02549 * 5 4 3 32 32 H 1.09003 * 109.47199 * 330.03308 * 5 4 3 33 33 H 1.08997 * 109.47106 * 209.99629 * 7 6 4 34 34 H 1.09004 * 109.47564 * 329.99587 * 7 6 4 35 35 H 0.97002 * 119.99414 * 354.80880 * 10 8 7 36 36 H 1.08999 * 109.46804 * 64.22361 * 12 11 10 37 37 H 1.08996 * 109.46760 * 184.22066 * 12 11 10 38 38 H 1.09008 * 109.46831 * 298.31931 * 13 12 11 39 39 H 1.09004 * 109.47270 * 58.31529 * 13 12 11 40 40 H 0.96698 * 114.00050 * 180.02562 * 14 13 12 41 41 H 1.08999 * 113.77220 * 336.35106 * 15 11 10 42 42 H 1.09006 * 113.77430 * 107.75169 * 15 11 10 43 43 H 0.97000 * 119.99829 * 180.02562 * 20 19 17 44 44 H 1.09003 * 113.76842 * 221.14756 * 25 16 15 45 45 H 1.09002 * 113.86671 * 89.76970 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8793 0.0005 5 6 4.5307 2.0245 0.0000 6 6 3.9353 -0.4007 0.0004 7 6 5.3574 -0.8994 0.0004 8 6 5.8315 -1.0657 1.4211 9 8 5.0880 -0.8045 2.3431 10 7 7.0817 -1.5048 1.6674 11 6 7.5816 -1.5582 3.0435 12 6 7.6988 -0.1763 3.6897 13 6 8.5823 0.7202 2.8199 14 8 8.6599 2.0224 3.4030 15 6 8.8389 -2.4302 3.2127 16 7 8.2002 -2.9311 4.4480 17 6 8.6647 -3.4831 5.6119 18 1 7.9704 -3.7730 6.3868 19 6 10.0277 -3.6702 5.7958 20 7 10.8738 -3.3174 4.8512 21 14 10.6615 -4.4226 7.3838 22 1 9.5160 -4.7303 8.2774 23 1 11.4003 -5.6740 7.0784 24 1 11.5717 -3.4622 8.0578 25 6 6.8618 -2.5954 3.9244 26 16 2.4855 -1.4020 0.0006 27 1 -0.3634 -0.0005 -1.0277 28 1 -0.3634 -0.8898 0.5142 29 1 -0.3634 0.8902 0.5134 30 1 4.7669 2.3010 1.0277 31 1 5.4431 1.7220 -0.5137 32 1 4.0905 2.8790 -0.5140 33 1 5.4057 -1.8595 -0.5134 34 1 5.9949 -0.1799 -0.5134 35 1 7.6506 -1.7852 0.9335 36 1 6.7075 0.2679 3.7797 37 1 8.1440 -0.2748 4.6797 38 1 9.5823 0.2912 2.7544 39 1 8.1527 0.7944 1.8208 40 1 9.2051 2.6454 2.9032 41 1 8.9546 -3.1892 2.4390 42 1 9.7499 -1.8581 3.3887 43 1 11.8263 -3.4485 4.9796 44 1 6.1971 -2.1550 4.6677 45 1 6.3938 -3.4021 3.3602 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700494010.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:47 Heat of formation + Delta-G solvation = -19.483147 kcal Electronic energy + Delta-G solvation = -27706.570230 eV Core-core repulsion = 23851.568462 eV Total energy + Delta-G solvation = -3855.001767 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.56407 -40.82187 -39.29757 -37.68748 -35.25854 -34.78886 -33.77919 -32.14861 -31.29482 -30.02419 -29.01731 -26.85319 -26.71609 -24.92798 -23.66361 -23.31790 -21.89190 -20.17533 -19.72733 -18.89580 -18.78523 -18.40430 -18.10851 -17.16672 -16.68210 -16.39885 -16.06216 -15.91282 -15.77760 -15.51572 -15.10919 -14.92120 -14.46278 -14.42033 -14.14213 -14.07524 -13.78676 -13.51840 -13.33161 -13.30370 -13.09681 -12.92639 -12.86677 -12.80129 -12.68596 -12.58522 -12.23735 -12.02416 -12.01108 -11.73965 -11.41020 -11.00266 -10.90360 -10.70851 -10.59412 -10.15228 -10.02971 -9.47254 -8.96713 -7.94661 -5.27232 -0.26733 0.43120 0.80154 1.44934 1.45849 1.55757 1.71602 1.76724 2.22427 2.49799 3.15741 3.19582 3.25670 3.38468 3.61875 3.67797 4.01228 4.07420 4.11722 4.14799 4.30377 4.34811 4.46450 4.50224 4.53757 4.57900 4.66114 4.71470 4.72082 4.77698 4.84914 4.85836 5.00427 5.04388 5.10826 5.13553 5.17867 5.22480 5.39770 5.47320 5.72959 5.89119 6.67652 6.81265 6.89873 6.93915 7.37703 7.55396 8.48784 9.22277 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017688 B = 0.002863 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.571815 B = 9776.590338 C =10680.793222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.036 3.964 3 N -0.503 5.503 4 C 0.058 3.942 5 C -0.076 4.076 6 C -0.218 4.218 7 C -0.056 4.056 8 C 0.513 3.487 9 O -0.567 6.567 10 N -0.704 5.704 11 C 0.159 3.841 12 C -0.088 4.088 13 C 0.093 3.907 14 O -0.594 6.594 15 C 0.173 3.827 16 N -0.633 5.633 17 C -0.237 4.237 18 H 0.076 0.924 19 C -0.057 4.057 20 N -0.945 5.945 21 Si 0.976 3.024 22 H -0.272 1.272 23 H -0.288 1.288 24 H -0.290 1.290 25 C 0.126 3.874 26 S 0.132 5.868 27 H 0.105 0.895 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.132 0.868 34 H 0.147 0.853 35 H 0.418 0.582 36 H 0.059 0.941 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.068 0.932 40 H 0.397 0.603 41 H 0.037 0.963 42 H 0.059 0.941 43 H 0.251 0.749 44 H 0.033 0.967 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.896 7.681 -18.491 23.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.241 4.241 3 N -0.220 5.220 4 C -0.074 4.074 5 C -0.135 4.135 6 C -0.339 4.339 7 C -0.098 4.098 8 C 0.299 3.701 9 O -0.444 6.444 10 N -0.358 5.358 11 C 0.071 3.929 12 C -0.127 4.127 13 C 0.015 3.985 14 O -0.402 6.402 15 C 0.048 3.952 16 N -0.360 5.360 17 C -0.365 4.365 18 H 0.094 0.906 19 C -0.251 4.251 20 N -0.594 5.594 21 Si 0.805 3.195 22 H -0.196 1.196 23 H -0.215 1.215 24 H -0.217 1.217 25 C -0.001 4.001 26 S 0.389 5.611 27 H 0.123 0.877 28 H 0.114 0.886 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.116 0.884 32 H 0.097 0.903 33 H 0.150 0.850 34 H 0.165 0.835 35 H 0.255 0.745 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.247 0.753 41 H 0.055 0.945 42 H 0.077 0.923 43 H 0.061 0.939 44 H 0.052 0.948 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -14.090 6.905 -17.172 23.262 hybrid contribution 1.617 0.112 0.592 1.726 sum -12.473 7.017 -16.580 21.902 Atomic orbital electron populations 1.20596 0.82972 1.04944 1.05170 1.27522 1.03118 0.90921 1.02544 1.66168 1.05120 1.32751 1.17919 1.20455 0.90474 0.94940 1.01486 1.20408 0.96244 0.94256 1.02617 1.25177 0.99511 0.95660 1.13528 1.20160 0.89967 1.06216 0.93454 1.21019 0.81214 0.75950 0.91873 1.90728 1.55223 1.50833 1.47658 1.45906 1.14989 1.66508 1.08363 1.22120 0.95596 0.93504 0.81648 1.21164 0.99861 0.92854 0.98829 1.21961 0.98434 0.82480 0.95585 1.86445 1.74991 1.23081 1.55717 1.22466 0.93677 0.92323 0.86768 1.46018 1.02548 1.73150 1.14268 1.19318 0.91404 1.33394 0.92368 0.90585 1.25520 0.95754 1.02430 1.01386 1.69934 1.01588 1.53618 1.34218 0.85050 0.78006 0.77420 0.79072 1.19619 1.21463 1.21690 1.22855 0.88700 0.94195 0.94301 1.83778 0.97406 1.11987 1.67976 0.87705 0.88617 0.89373 0.91942 0.88374 0.90324 0.84992 0.83501 0.74475 0.92268 0.93377 0.93483 0.91415 0.75346 0.94513 0.92276 0.93940 0.94843 0.94152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 10.46 71.23 0.75 -0.31 16 2 C 0.04 0.80 7.39 88.52 0.65 1.46 16 3 N -0.50 -13.34 10.53 -179.41 -1.89 -15.23 16 4 C 0.06 1.43 6.74 41.52 0.28 1.71 16 5 C -0.08 -1.49 10.06 71.24 0.72 -0.78 16 6 C -0.22 -4.91 5.08 24.64 0.13 -4.79 16 7 C -0.06 -0.96 5.92 29.10 0.17 -0.79 16 8 C 0.51 13.53 7.48 87.66 0.66 14.19 16 9 O -0.57 -20.64 14.43 -3.05 -0.04 -20.69 16 10 N -0.70 -18.20 4.53 -427.59 -1.94 -20.14 16 11 C 0.16 5.83 0.67 5.36 0.00 5.83 16 12 C -0.09 -3.38 4.81 30.60 0.15 -3.23 16 13 C 0.09 2.78 6.83 71.98 0.49 3.27 16 14 O -0.59 -17.59 13.66 -148.98 -2.03 -19.63 16 15 C 0.17 7.63 6.69 86.44 0.58 8.21 16 16 N -0.63 -32.74 3.55 -715.58 -2.54 -35.28 16 17 C -0.24 -13.50 10.70 84.03 0.90 -12.60 16 18 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 19 C -0.06 -3.23 5.50 84.86 0.47 -2.76 16 20 N -0.95 -54.91 11.39 21.65 0.25 -54.66 16 21 Si 0.98 45.80 29.55 68.60 2.03 47.83 16 22 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 23 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 24 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 25 C 0.13 5.56 7.55 86.48 0.65 6.22 16 26 S 0.13 2.81 23.18 -56.49 -1.31 1.50 16 27 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.09 1.22 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.10 1.32 6.72 -2.39 -0.02 1.30 16 32 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.15 1.50 6.76 -2.38 -0.02 1.48 16 35 H 0.42 7.65 8.70 -92.71 -0.81 6.84 16 36 H 0.06 2.42 7.09 -2.39 -0.02 2.41 16 37 H 0.05 2.23 8.02 -2.39 -0.02 2.21 16 38 H 0.05 1.44 7.54 -2.38 -0.02 1.42 16 39 H 0.07 1.60 7.62 -2.39 -0.02 1.58 16 40 H 0.40 7.08 9.12 -74.06 -0.68 6.40 16 41 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.06 2.89 6.56 -2.38 -0.02 2.87 16 43 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 44 H 0.03 1.57 8.10 -2.39 -0.02 1.56 16 45 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -79.86 385.54 -1.34 -81.20 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -0.45 Total: 19.48 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: 6.59 Total: 15.62 kcal Atomic # 7 Polarization: -119.19 SS G_CDS: -6.12 Total: -125.31 kcal Atomic # 8 Polarization: -38.24 SS G_CDS: -2.08 Total: -40.32 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -1.31 Total: 1.50 kcal Total: -79.86 -1.34 -81.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700494010.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.718 kcal (2) G-P(sol) polarization free energy of solvation -79.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds