Wall clock time and date at job start Sat Apr 11 2020 05:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35459 * 126.77739 * 2 1 4 4 C 1.41375 * 103.98583 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.80296 * 180.02562 * 4 3 2 6 6 N 1.46898 * 109.47030 * 94.99971 * 5 4 3 7 7 C 1.46900 * 110.99765 * 180.02562 * 6 5 4 8 8 H 1.08996 * 110.78204 * 38.13667 * 7 6 5 9 9 C 1.55159 * 110.72223 * 274.89596 * 7 6 5 10 10 C 1.54908 * 101.58149 * 206.13846 * 9 7 6 11 11 N 1.47417 * 104.83466 * 37.00695 * 10 9 7 12 12 C 1.34780 * 125.64832 * 155.91588 * 11 10 9 13 13 O 1.21279 * 120.00097 * 179.97438 * 12 11 10 14 14 C 1.50693 * 120.00035 * 359.95122 * 12 11 10 15 15 S 1.81004 * 109.47288 * 179.97438 * 14 12 11 16 16 C 1.76199 * 99.99818 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00402 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99589 * 179.97438 * 16 15 14 19 19 N 1.31629 * 120.00500 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99920 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47339 * 89.99928 * 20 18 16 22 22 H 1.48504 * 109.47199 * 210.00265 * 20 18 16 23 23 H 1.48508 * 109.47039 * 330.00152 * 20 18 16 24 24 C 1.47027 * 108.70627 * 335.87259 * 11 10 9 25 25 H 1.08994 * 109.88085 * 241.64498 * 24 11 10 26 26 C 1.52999 * 110.00967 * 120.54726 * 24 11 10 27 27 N 1.30177 * 106.39860 * 0.26190 * 4 3 2 28 28 O 1.20923 * 111.60222 * 359.53760 * 27 4 3 29 29 H 1.08996 * 109.47233 * 89.99827 * 1 2 3 30 30 H 1.08997 * 109.46580 * 210.00087 * 1 2 3 31 31 H 1.08999 * 109.46543 * 329.99621 * 1 2 3 32 32 H 1.07998 * 128.00439 * 359.94614 * 3 2 1 33 33 H 1.09006 * 109.46894 * 334.99741 * 5 4 3 34 34 H 1.09002 * 109.46916 * 215.00116 * 5 4 3 35 35 H 1.00903 * 110.99774 * 303.95286 * 6 5 4 36 36 H 1.09004 * 111.00069 * 324.21067 * 9 7 6 37 37 H 1.08994 * 111.00155 * 88.02090 * 9 7 6 38 38 H 1.09000 * 110.36915 * 155.84981 * 10 9 7 39 39 H 1.09004 * 110.36393 * 278.16804 * 10 9 7 40 40 H 1.09004 * 109.47317 * 299.99765 * 14 12 11 41 41 H 1.08999 * 109.47277 * 59.99796 * 14 12 11 42 42 H 0.96997 * 120.00555 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.47102 * 295.52083 * 26 24 11 44 44 H 1.08993 * 109.47260 * 55.52384 * 26 24 11 45 45 H 1.09003 * 109.46863 * 175.52128 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0850 0.0000 4 6 3.6214 0.5373 0.0006 5 6 4.9211 1.3000 0.0014 6 7 5.4038 1.4436 1.3814 7 6 6.6717 2.1844 1.4212 8 1 6.6714 2.9912 0.6884 9 6 7.8726 1.2303 1.1868 10 6 9.0141 1.9822 1.9155 11 7 8.3760 2.5767 3.1040 12 6 9.0061 2.9199 4.2450 13 8 8.3780 3.4041 5.1625 14 6 10.4909 2.7015 4.3807 15 16 11.0360 3.2594 6.0141 16 6 12.7567 2.8972 5.9026 17 1 13.1592 2.4600 5.0009 18 6 13.5951 3.1748 6.9734 19 7 13.1047 3.7081 8.0723 20 14 15.4196 2.7914 6.8550 21 1 16.1385 3.9698 6.3075 22 1 15.9473 2.4735 8.2062 23 1 15.6233 1.6262 5.9572 24 6 6.9385 2.7341 2.8384 25 1 6.6664 3.7885 2.8842 26 6 6.1265 1.9421 3.8652 27 7 3.4764 -0.7563 -0.0048 28 8 2.3096 -1.0736 0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3632 -0.8900 0.5138 31 1 -0.3632 0.8900 0.5139 32 1 2.0345 2.1271 -0.0008 33 1 4.7633 2.2873 -0.4329 34 1 5.6608 0.7580 -0.5877 35 1 4.7084 1.8860 1.9635 36 1 7.6928 0.2566 1.6427 37 1 8.0881 1.1276 0.1233 38 1 9.7974 1.2855 2.2140 39 1 9.4238 2.7629 1.2745 40 1 10.7143 1.6409 4.2655 41 1 11.0135 3.2687 3.6104 42 1 13.6905 3.9018 8.8208 43 1 6.3302 0.8778 3.7468 44 1 6.4070 2.2561 4.8705 45 1 5.0638 2.1282 3.7096 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700811289.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:50 Heat of formation + Delta-G solvation = 35.061873 kcal Electronic energy + Delta-G solvation = -26263.238456 eV Core-core repulsion = 22410.601939 eV Total energy + Delta-G solvation = -3852.636518 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.27810 -40.21201 -37.91308 -35.98156 -34.17394 -33.47009 -32.41680 -31.49055 -30.77084 -28.59074 -28.22282 -26.56100 -25.48187 -25.00978 -23.34324 -22.99673 -20.55902 -20.32839 -18.99754 -17.97847 -17.74094 -17.55338 -16.66388 -16.31144 -16.19963 -15.23554 -14.90980 -14.85319 -14.78659 -14.38348 -14.16585 -13.90939 -13.81208 -13.73028 -13.25945 -13.09831 -12.93792 -12.59932 -12.54519 -12.49487 -12.37407 -11.87609 -11.65523 -11.57710 -11.46771 -11.06696 -11.04884 -11.00476 -10.82416 -10.74666 -10.53039 -9.80184 -9.71029 -9.30890 -9.05360 -8.89778 -8.48776 -8.21719 -6.48590 -6.20359 -3.90814 1.09478 1.79145 2.72037 2.88982 3.09273 3.23259 3.26506 3.31191 3.58273 3.70353 3.87669 4.08575 4.18743 4.22921 4.44745 4.59829 4.68515 4.78605 4.83162 4.86845 5.01265 5.03776 5.07728 5.10238 5.14759 5.22150 5.31911 5.37983 5.40614 5.45434 5.52928 5.58127 5.63755 5.67414 5.73084 5.90136 5.99786 6.09361 6.16209 6.37407 6.53923 6.60880 6.89477 7.60815 7.70936 7.93875 8.36536 8.59603 9.24894 10.87072 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033474 B = 0.001804 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.277963 B =15516.766970 C =15850.025996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.033 4.033 3 C -0.234 4.234 4 C 0.021 3.979 5 C 0.137 3.863 6 N -0.669 5.669 7 C 0.078 3.922 8 H 0.062 0.938 9 C -0.121 4.121 10 C 0.100 3.900 11 N -0.620 5.620 12 C 0.550 3.450 13 O -0.514 6.514 14 C -0.147 4.147 15 S -0.060 6.060 16 C -0.535 4.535 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.918 3.082 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.140 3.860 25 H 0.071 0.929 26 C -0.156 4.156 27 N -0.345 5.345 28 O 0.101 5.899 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.169 0.831 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.348 0.652 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.268 0.732 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.807 -5.281 -21.586 32.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.097 4.097 3 C -0.256 4.256 4 C -0.139 4.139 5 C 0.008 3.992 6 N -0.303 5.303 7 C -0.032 4.032 8 H 0.080 0.920 9 C -0.160 4.160 10 C -0.024 4.024 11 N -0.358 5.358 12 C 0.339 3.661 13 O -0.388 6.388 14 C -0.297 4.297 15 S 0.166 5.834 16 C -0.683 4.683 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.197 1.197 24 C 0.035 3.965 25 H 0.090 0.910 26 C -0.214 4.214 27 N -0.047 5.047 28 O 0.033 5.967 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.187 0.813 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.169 0.831 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -23.492 -6.107 -19.948 31.418 hybrid contribution 1.283 0.906 -1.408 2.110 sum -22.210 -5.201 -21.357 31.248 Atomic orbital electron populations 1.20348 0.84027 1.04787 1.04094 1.24525 0.96445 0.86224 1.02468 1.22434 0.91471 1.00988 1.10665 1.23367 0.96723 0.90157 1.03629 1.20197 0.90425 0.97202 0.91420 1.60607 1.05615 1.55288 1.08830 1.22572 0.90005 0.94604 0.96068 0.91972 1.22849 0.92989 0.99495 1.00623 1.22300 0.96243 0.97003 0.86820 1.48502 1.07701 1.64487 1.15096 1.19996 0.89146 0.76835 0.80110 1.90687 1.67420 1.42725 1.37953 1.23514 0.93485 1.05027 1.07707 1.85383 1.07229 1.81629 1.09121 1.22864 0.92966 1.48418 1.04084 0.90940 1.24988 0.99450 0.94634 0.94480 1.70016 1.35895 1.40230 1.04147 0.86172 0.82942 0.78754 0.77654 1.20280 1.20741 1.19691 1.21450 0.82207 0.99261 0.93547 0.91049 1.21999 0.98367 1.00897 1.00117 1.73892 0.96527 1.16376 1.17932 1.84864 1.11413 1.33256 1.67212 0.89405 0.89721 0.89017 0.81307 0.92670 0.89036 0.83064 0.89355 0.90283 0.90071 0.91405 0.89305 0.89362 0.92193 0.91632 0.90765 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.19 10.45 36.01 0.38 0.19 16 2 C -0.03 -0.22 7.49 -35.30 -0.26 -0.48 16 3 C -0.23 -1.56 11.06 -39.38 -0.44 -2.00 16 4 C 0.02 0.18 6.84 -82.10 -0.56 -0.38 16 5 C 0.14 1.02 6.13 -4.98 -0.03 0.99 16 6 N -0.67 -5.71 5.51 -106.05 -0.58 -6.29 16 7 C 0.08 0.69 3.10 -65.88 -0.20 0.49 16 8 H 0.06 0.48 7.92 -51.93 -0.41 0.07 16 9 C -0.12 -1.10 6.64 -24.58 -0.16 -1.26 16 10 C 0.10 1.11 6.69 -2.53 -0.02 1.09 16 11 N -0.62 -9.12 3.08 -163.02 -0.50 -9.62 16 12 C 0.55 10.77 7.65 -10.99 -0.08 10.69 16 13 O -0.51 -11.90 14.69 5.56 0.08 -11.82 16 14 C -0.15 -3.07 5.16 36.00 0.19 -2.88 16 15 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 16 C -0.54 -15.40 9.50 30.94 0.29 -15.11 16 17 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 18 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 19 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 20 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 C 0.14 1.71 3.40 -66.95 -0.23 1.48 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 26 C -0.16 -2.00 8.31 37.16 0.31 -1.70 16 27 N -0.34 -3.80 12.07 33.42 0.40 -3.39 16 28 O 0.10 0.96 11.20 17.17 0.19 1.15 16 29 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 30 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 32 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.06 0.31 8.09 -51.93 -0.42 -0.11 16 34 H 0.09 0.71 8.08 -51.93 -0.42 0.29 16 35 H 0.35 2.84 6.65 -39.29 -0.26 2.58 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.90 7.48 -51.93 -0.39 0.51 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.09 1.74 7.85 -51.91 -0.41 1.33 16 41 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 42 H 0.27 7.56 8.31 -40.82 -0.34 7.23 16 43 H 0.06 0.89 8.10 -51.93 -0.42 0.46 16 44 H 0.07 1.21 6.58 -51.93 -0.34 0.87 16 45 H 0.06 0.59 6.62 -51.93 -0.34 0.25 16 LS Contribution 385.82 15.07 5.81 5.81 Total: -1.00 -35.97 385.82 -8.78 -44.75 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -6.76 Total: -0.80 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -0.92 Total: -6.85 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.05 Total: -44.93 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.27 Total: -10.67 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.97 -8.78 -44.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700811289.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.809 kcal (2) G-P(sol) polarization free energy of solvation -35.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds