Wall clock time and date at job start Sat Apr 11 2020 05:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35459 * 126.77739 * 2 1 4 4 C 1.41375 * 103.98583 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.80296 * 180.02562 * 4 3 2 6 6 N 1.46898 * 109.47030 * 94.99971 * 5 4 3 7 7 C 1.46900 * 110.99765 * 180.02562 * 6 5 4 8 8 H 1.08996 * 110.78204 * 38.13667 * 7 6 5 9 9 C 1.55159 * 110.72223 * 274.89596 * 7 6 5 10 10 C 1.54908 * 101.58149 * 206.13846 * 9 7 6 11 11 N 1.47417 * 104.83466 * 37.00695 * 10 9 7 12 12 C 1.34780 * 125.64832 * 155.91588 * 11 10 9 13 13 O 1.21279 * 120.00097 * 179.97438 * 12 11 10 14 14 C 1.50693 * 120.00035 * 359.95122 * 12 11 10 15 15 S 1.81004 * 109.47288 * 179.97438 * 14 12 11 16 16 C 1.76199 * 99.99818 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00402 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99589 * 179.97438 * 16 15 14 19 19 N 1.31629 * 120.00500 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99920 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47339 * 89.99928 * 20 18 16 22 22 H 1.48504 * 109.47199 * 210.00265 * 20 18 16 23 23 H 1.48508 * 109.47039 * 330.00152 * 20 18 16 24 24 C 1.47027 * 108.70627 * 335.87259 * 11 10 9 25 25 H 1.08994 * 109.88085 * 241.64498 * 24 11 10 26 26 C 1.52999 * 110.00967 * 120.54726 * 24 11 10 27 27 N 1.30177 * 106.39860 * 0.26190 * 4 3 2 28 28 O 1.20923 * 111.60222 * 359.53760 * 27 4 3 29 29 H 1.08996 * 109.47233 * 89.99827 * 1 2 3 30 30 H 1.08997 * 109.46580 * 210.00087 * 1 2 3 31 31 H 1.08999 * 109.46543 * 329.99621 * 1 2 3 32 32 H 1.07998 * 128.00439 * 359.94614 * 3 2 1 33 33 H 1.09006 * 109.46894 * 334.99741 * 5 4 3 34 34 H 1.09002 * 109.46916 * 215.00116 * 5 4 3 35 35 H 1.00903 * 110.99774 * 303.95286 * 6 5 4 36 36 H 1.09004 * 111.00069 * 324.21067 * 9 7 6 37 37 H 1.08994 * 111.00155 * 88.02090 * 9 7 6 38 38 H 1.09000 * 110.36915 * 155.84981 * 10 9 7 39 39 H 1.09004 * 110.36393 * 278.16804 * 10 9 7 40 40 H 1.09004 * 109.47317 * 299.99765 * 14 12 11 41 41 H 1.08999 * 109.47277 * 59.99796 * 14 12 11 42 42 H 0.96997 * 120.00555 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.47102 * 295.52083 * 26 24 11 44 44 H 1.08993 * 109.47260 * 55.52384 * 26 24 11 45 45 H 1.09003 * 109.46863 * 175.52128 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0850 0.0000 4 6 3.6214 0.5373 0.0006 5 6 4.9211 1.3000 0.0014 6 7 5.4038 1.4436 1.3814 7 6 6.6717 2.1844 1.4212 8 1 6.6714 2.9912 0.6884 9 6 7.8726 1.2303 1.1868 10 6 9.0141 1.9822 1.9155 11 7 8.3760 2.5767 3.1040 12 6 9.0061 2.9199 4.2450 13 8 8.3780 3.4041 5.1625 14 6 10.4909 2.7015 4.3807 15 16 11.0360 3.2594 6.0141 16 6 12.7567 2.8972 5.9026 17 1 13.1592 2.4600 5.0009 18 6 13.5951 3.1748 6.9734 19 7 13.1047 3.7081 8.0723 20 14 15.4196 2.7914 6.8550 21 1 16.1385 3.9698 6.3075 22 1 15.9473 2.4735 8.2062 23 1 15.6233 1.6262 5.9572 24 6 6.9385 2.7341 2.8384 25 1 6.6664 3.7885 2.8842 26 6 6.1265 1.9421 3.8652 27 7 3.4764 -0.7563 -0.0048 28 8 2.3096 -1.0736 0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3632 -0.8900 0.5138 31 1 -0.3632 0.8900 0.5139 32 1 2.0345 2.1271 -0.0008 33 1 4.7633 2.2873 -0.4329 34 1 5.6608 0.7580 -0.5877 35 1 4.7084 1.8860 1.9635 36 1 7.6928 0.2566 1.6427 37 1 8.0881 1.1276 0.1233 38 1 9.7974 1.2855 2.2140 39 1 9.4238 2.7629 1.2745 40 1 10.7143 1.6409 4.2655 41 1 11.0135 3.2687 3.6104 42 1 13.6905 3.9018 8.8208 43 1 6.3302 0.8778 3.7468 44 1 6.4070 2.2561 4.8705 45 1 5.0638 2.1282 3.7096 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700811289.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:49 Heat of formation + Delta-G solvation = 10.299760 kcal Electronic energy + Delta-G solvation = -26264.312222 eV Core-core repulsion = 22410.601939 eV Total energy + Delta-G solvation = -3853.710284 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.86694 -41.36405 -39.12575 -36.81633 -34.78944 -34.59774 -34.09233 -32.51935 -31.86296 -29.97437 -28.59727 -27.68977 -27.32843 -25.85377 -24.08173 -23.90917 -21.35740 -21.06278 -20.29428 -19.56817 -18.59761 -18.17845 -18.03003 -17.31094 -17.01551 -16.89252 -16.49536 -16.17348 -15.79364 -15.39886 -15.01594 -14.84196 -14.59218 -14.47585 -14.41286 -13.93556 -13.78299 -13.75175 -13.50011 -13.42596 -13.15915 -13.15490 -13.09322 -12.90119 -12.76219 -12.60119 -12.39233 -12.07620 -11.82478 -11.74954 -11.68362 -11.15532 -11.15232 -10.86826 -10.29772 -10.21316 -9.73741 -9.49163 -8.68981 -8.35716 -6.14433 0.57144 1.20069 1.26341 1.41857 1.43988 1.55282 1.56893 2.05381 2.26281 2.28906 2.98326 3.05960 3.18204 3.30527 3.40066 3.59243 3.63551 3.86615 4.02740 4.15444 4.19587 4.24590 4.29816 4.31221 4.33760 4.41709 4.46651 4.57402 4.63398 4.65857 4.69174 4.75162 4.75825 4.95388 4.96747 5.02353 5.06272 5.20967 5.28746 5.29273 5.40408 5.47327 5.91446 6.18569 6.25067 6.40076 7.05267 7.12602 7.37641 8.73606 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033474 B = 0.001804 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.277963 B =15516.766970 C =15850.025996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.033 4.033 3 C -0.239 4.239 4 C 0.012 3.988 5 C 0.140 3.860 6 N -0.679 5.679 7 C 0.094 3.906 8 H 0.089 0.911 9 C -0.112 4.112 10 C 0.090 3.910 11 N -0.612 5.612 12 C 0.547 3.453 13 O -0.561 6.561 14 C -0.120 4.120 15 S -0.149 6.149 16 C -0.547 4.547 17 H 0.082 0.918 18 C 0.014 3.986 19 N -0.911 5.911 20 Si 0.999 3.001 21 H -0.266 1.266 22 H -0.277 1.277 23 H -0.259 1.259 24 C 0.133 3.867 25 H 0.070 0.930 26 C -0.146 4.146 27 N -0.387 5.387 28 O 0.079 5.921 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.195 0.805 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.350 0.650 36 H 0.072 0.928 37 H 0.109 0.891 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.271 0.729 43 H 0.056 0.944 44 H 0.034 0.966 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.068 -5.354 -24.688 34.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.096 4.096 3 C -0.261 4.261 4 C -0.147 4.147 5 C 0.011 3.989 6 N -0.314 5.314 7 C -0.016 4.016 8 H 0.106 0.894 9 C -0.151 4.151 10 C -0.032 4.032 11 N -0.347 5.347 12 C 0.335 3.665 13 O -0.440 6.440 14 C -0.271 4.271 15 S 0.078 5.922 16 C -0.695 4.695 17 H 0.100 0.900 18 C -0.191 4.191 19 N -0.547 5.547 20 Si 0.821 3.179 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.182 1.182 24 C 0.030 3.970 25 H 0.088 0.912 26 C -0.204 4.204 27 N -0.094 5.094 28 O 0.014 5.986 29 H 0.122 0.878 30 H 0.108 0.892 31 H 0.128 0.872 32 H 0.213 0.787 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.172 0.828 36 H 0.090 0.910 37 H 0.128 0.872 38 H 0.099 0.901 39 H 0.109 0.891 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.053 0.947 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -23.795 -6.209 -23.115 33.749 hybrid contribution 1.194 0.904 -0.542 1.593 sum -22.600 -5.305 -23.656 33.144 Atomic orbital electron populations 1.20562 0.81287 1.05907 1.05412 1.25293 0.97945 0.85508 1.00847 1.22789 0.90499 1.02243 1.10525 1.23760 0.98114 0.89884 1.02906 1.20250 0.89794 0.98214 0.90609 1.60543 1.05560 1.55458 1.09843 1.22463 0.90206 0.95098 0.93831 0.89376 1.22823 0.92039 0.98275 1.01924 1.22656 0.97018 0.97835 0.85669 1.48447 1.09155 1.62635 1.14492 1.19723 0.88546 0.77096 0.81086 1.90670 1.67995 1.45277 1.40021 1.23312 0.94853 1.05652 1.03328 1.85558 1.08485 1.82743 1.15391 1.23197 0.93000 1.48588 1.04728 0.89965 1.26136 1.05064 0.94055 0.93819 1.70181 1.37992 1.41428 1.05134 0.84944 0.75825 0.79131 0.78016 1.19157 1.20236 1.18242 1.21674 0.80368 0.99390 0.95612 0.91175 1.21879 1.00169 1.00214 0.98171 1.73883 0.97486 1.17816 1.20165 1.84808 1.11461 1.34522 1.67813 0.87833 0.89245 0.87212 0.78740 0.90118 0.89279 0.82819 0.90953 0.87244 0.90111 0.89068 0.87926 0.87511 0.91952 0.92492 0.94732 0.89884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.20 10.45 71.24 0.74 0.54 16 2 C -0.03 -0.38 7.49 25.04 0.19 -0.19 16 3 C -0.24 -2.68 11.06 22.40 0.25 -2.43 16 4 C 0.01 0.20 6.84 43.58 0.30 0.50 16 5 C 0.14 1.71 6.13 85.56 0.52 2.23 16 6 N -0.68 -9.95 5.51 -489.44 -2.70 -12.65 16 7 C 0.09 1.40 3.10 46.11 0.14 1.54 16 8 H 0.09 0.94 7.92 -2.39 -0.02 0.92 16 9 C -0.11 -1.70 6.64 31.99 0.21 -1.49 16 10 C 0.09 1.76 6.69 86.86 0.58 2.35 16 11 N -0.61 -17.41 3.08 -788.07 -2.43 -19.84 16 12 C 0.55 21.71 7.65 87.65 0.67 22.38 16 13 O -0.56 -27.16 14.69 -3.03 -0.04 -27.21 16 14 C -0.12 -5.04 5.16 71.23 0.37 -4.67 16 15 S -0.15 -8.50 20.57 -56.49 -1.16 -9.66 16 16 C -0.55 -31.82 9.50 67.96 0.65 -31.17 16 17 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 18 C 0.01 0.81 5.49 84.86 0.47 1.28 16 19 N -0.91 -56.61 13.22 21.65 0.29 -56.33 16 20 Si 1.00 44.06 29.55 68.60 2.03 46.09 16 21 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 22 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 24 C 0.13 3.09 3.40 45.34 0.15 3.24 16 25 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 26 C -0.15 -3.77 8.31 71.98 0.60 -3.17 16 27 N -0.39 -8.39 12.07 -49.56 -0.60 -8.99 16 28 O 0.08 1.48 11.20 71.60 0.80 2.28 16 29 H 0.10 0.00 8.14 -2.39 -0.02 -0.02 16 30 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 32 H 0.20 0.97 8.06 -2.91 -0.02 0.94 16 33 H 0.08 0.59 8.09 -2.38 -0.02 0.57 16 34 H 0.09 1.14 8.08 -2.39 -0.02 1.12 16 35 H 0.35 4.90 6.65 -89.69 -0.60 4.31 16 36 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.08 1.61 7.48 -2.39 -0.02 1.60 16 39 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.10 3.98 7.85 -2.39 -0.02 3.96 16 41 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 42 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 43 H 0.06 1.54 8.10 -2.39 -0.02 1.53 16 44 H 0.03 1.17 6.58 -2.39 -0.02 1.15 16 45 H 0.08 1.65 6.62 -2.39 -0.02 1.64 16 Total: -1.00 -82.93 385.82 2.43 -80.50 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.41 Total: 14.86 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 5.84 Total: -9.06 kcal Atomic # 7 Polarization: -92.36 SS G_CDS: -5.44 Total: -97.80 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: 0.76 Total: -24.92 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.66 kcal Total: -82.93 2.43 -80.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700811289.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.798 kcal (2) G-P(sol) polarization free energy of solvation -82.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds